Cow genome map

Conread name: LyN1-MLN01F050049

Conread position: 1-318
Cow position: chr4:6449605-6449288 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 214
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 62, 142

Conread position: 1-357
Cow position: chr4:54955251-54955611 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 138
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 11, 151

Conread position: 1-568
Cow position: chr4:3829777-3830335 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 128

Conread position: 1-568
Cow position: chr4:8598849-8598297 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 13

Conread position: 1-573
Cow position: chr4:355194-355774 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 158

Conread position: 1-573
Cow position: chr4:25600322-25599754 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 158

Conread position: 1-573
Cow position: chr4:29532436-29531850 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 158

Conread position: 1-579
Cow position: chr4:12241936-12241347 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 14

Conread position: 1-579
Cow position: chr4:28830323-28830900 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 119

Conread position: 1-579
Cow position: chr4:48025684-48026268 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 153

Conread position: 2-314
Cow position: chr4:21358949-21359246 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 208
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 263, 96

Conread position: 2-384
Cow position: chr4:54190158-54190533 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 25

Conread position: 3-579
Cow position: chr4:22471494-22472039 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 372
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 61, 66

Conread position: 3-586
Cow position: chr4:1464634-1464046 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 45

Conread position: 4-532
Cow position: chr4:1371705-1371180 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 60

Conread position: 4-537
Cow position: chr4:46663483-46664024 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 87

Conread position: 4-579
Cow position: chr4:16359176-16359753 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 16

Conread position: 6-529
Cow position: chr4:31668603-31669129 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 144

Conread position: 7-573
Cow position: chr4:47718299-47717742 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 20

Conread position: 7-579
Cow position: chr4:66925298-66925870 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 20

Conread position: 9-161
Cow position: chr4:10408033-10408182 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 98, 18

Conread position: 16-557
Cow position: chr4:34185554-34185022 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 72

Conread position: 16-574
Cow position: chr4:21338682-21338137 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 49

Conread position: 17-309
Cow position: chr4:9311535-9311832 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 90, 130

Conread position: 17-406
Cow position: chr4:23114878-23114476 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 138

Conread position: 17-550
Cow position: chr4:3125079-3125619 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 131

Conread position: 17-558
Cow position: chr4:6215247-6214709 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 29

Conread position: 17-562
Cow position: chr4:40824951-40824399 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 116

Conread position: 17-573
Cow position: chr4:47764872-47764305 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-579
Cow position: chr4:101630-101062 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 39

Conread position: 17-579
Cow position: chr4:528291-528864 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 137

Conread position: 17-579
Cow position: chr4:602295-602864 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-579
Cow position: chr4:1931322-1930753 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 131

Conread position: 17-579
Cow position: chr4:5879484-5880036 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 59

Conread position: 17-579
Cow position: chr4:6269323-6268757 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 110

Conread position: 17-579
Cow position: chr4:16055892-16056472 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 419

Conread position: 17-579
Cow position: chr4:65224236-65223663 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 114

Conread position: 18-579
Cow position: chr4:157827-158386 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 109

Conread position: 21-233
Cow position: chr4:3358026-3358239 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 26, 134

Conread position: 21-233
Cow position: chr4:57978719-57978931 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 85, 128

Conread position: 21-235
Cow position: chr4:41118429-41118645 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 171
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 85, 128

Conread position: 21-248
Cow position: chr4:33074082-33073854 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 86, 133

Conread position: 21-279
Cow position: chr4:46713030-46712776 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 225, 86

Conread position: 21-471
Cow position: chr4:1050318-1049859 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 128

Conread position: 21-569
Cow position: chr4:18516198-18516757 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-573
Cow position: chr4:24445897-24445336 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-573
Cow position: chr4:41330742-41331302 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 128

Conread position: 21-573
Cow position: chr4:43320334-43319781 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-573
Cow position: chr4:45049993-45049433 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-574
Cow position: chr4:36895676-36896235 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 21-579
Cow position: chr4:3960898-3961462 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 114

Conread position: 21-579
Cow position: chr4:4905457-4906017 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 64

Conread position: 21-579
Cow position: chr4:44724385-44724954 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 133

Conread position: 22-579
Cow position: chr4:6491043-6490494 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 126

Conread position: 27-566
Cow position: chr4:33493119-33493666 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 122

Conread position: 27-573
Cow position: chr4:13491884-13492441 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 127

Conread position: 27-573
Cow position: chr4:17926946-17926390 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 127

Conread position: 28-251
Cow position: chr4:11617747-11617977 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 80, 0

Conread position: 29-579
Cow position: chr4:30308124-30307588 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 78

Conread position: 31-235
Cow position: chr4:41954107-41954310 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 76, 103

Conread position: 32-573
Cow position: chr4:43880423-43880973 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 122

Conread position: 41-579
Cow position: chr4:13547351-13547900 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 12

Conread position: 53-356
Cow position: chr4:27442433-27442740 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 18, 24

Conread position: 64-295
Cow position: chr4:60265442-60265205 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 42, 68

Conread position: 65-579
Cow position: chr4:1497407-1496888 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 342
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 160

Conread position: 100-579
Cow position: chr4:32211548-32212038 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 264

Conread position: 132-579
Cow position: chr4:39272524-39272065 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 15

Conread position: 134-573
Cow position: chr4:496521-496092 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 290
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 48, 20

Conread position: 136-543
Cow position: chr4:12715402-12715817 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 263
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 8, 70

Conread position: 138-579
Cow position: chr4:18425098-18424654 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 319

Conread position: 140-407
Cow position: chr4:10408200-10408482 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 212
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 23, 7

Conread position: 148-579
Cow position: chr4:60673333-60673735 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 291
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 16, 108

Conread position: 150-579
Cow position: chr4:66179554-66179117 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 13

Conread position: 180-412
Cow position: chr4:12608040-12607799 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 69, 13

Conread position: 206-573
Cow position: chr4:26887356-26886998 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 192

Conread position: 223-544
Cow position: chr4:15263478-15263158 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 217
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 76, 11

Conread position: 232-579
Cow position: chr4:57979147-57979499 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 223

Conread position: 234-566
Cow position: chr4:969519-969187 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 231
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 8, 62

Conread position: 235-561
Cow position: chr4:33073576-33073256 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 245
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 34, 10

Conread position: 239-579
Cow position: chr4:27332968-27333306 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 6

Conread position: 239-586
Cow position: chr4:11618385-11618731 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 195

Conread position: 244-580
Cow position: chr4:62565516-62565855 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 228
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 6, 69

Conread position: 300-579
Cow position: chr4:60264973-60264697 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 110

Conread position: 312-573
Cow position: chr4:41119616-41119878 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 168

Conread position: 328-566
Cow position: chr4:23493368-23493594 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 24, 12

Conread position: 369-573
Cow position: chr4:12586961-12587163 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 112, 0

Conread position: 378-567
Cow position: chr4:61256568-61256755 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 149
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 103, 0

Conread position: 404-579
Cow position: chr4:9355073-9354900 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 77, 0

Show alignments to all cow chromosomes.