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Cow genome map

           
Conread name:
           
LyN1-MLN01F050049
        

               
Conread position:
               
1-167
               

               
Cow position:
               
chrX:28553378-28553543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
105, 47
               

               
Conread position:
               
1-188
               

               
Cow position:
               
chrX:34987997-34988192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 116
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chrX:23041963-23041728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
104, 20
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chrX:29284089-29284333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
105, 147
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chrX:28651759-28651415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
268, 105
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chrX:41151577-41151983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 152
               

               
Conread position:
               
1-550
               

               
Cow position:
               
chrX:22131339-22130795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 133
               

               
Conread position:
               
1-563
               

               
Cow position:
               
chrX:31079884-31080446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 42
               

               
Conread position:
               
1-566
               

               
Cow position:
               
chrX:21489588-21490158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 141
               

               
Conread position:
               
1-568
               

               
Cow position:
               
chrX:19185595-19185037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 132
               

               
Conread position:
               
1-568
               

               
Cow position:
               
chrX:29882890-29882299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 106
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chrX:15127893-15127306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 8
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chrX:15598279-15598866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 157
               

               
Conread position:
               
1-573
               

               
Cow position:
               
chrX:30143034-30142458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
1-574
               

               
Cow position:
               
chrX:2860446-2859864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 491
               

               
Conread position:
               
1-574
               

               
Cow position:
               
chrX:23392252-23391662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 152
               

               
Conread position:
               
1-579
               

               
Cow position:
               
chrX:5299843-5299281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 79
               

               
Conread position:
               
1-579
               

               
Cow position:
               
chrX:16017768-16017200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
1-579
               

               
Cow position:
               
chrX:26759241-26758663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
1-579
               

               
Cow position:
               
chrX:26767838-26767256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 8
               

               
Conread position:
               
1-579
               

               
Cow position:
               
chrX:29794747-29794172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 24
               

               
Conread position:
               
1-579
               

               
Cow position:
               
chrX:32095601-32095024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chrX:24139624-24139234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
2-568
               

               
Cow position:
               
chrX:20698908-20698365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
105, 141
               

               
Conread position:
               
2-579
               

               
Cow position:
               
chrX:21270811-21270255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 126
               

               
Conread position:
               
2-579
               

               
Cow position:
               
chrX:22813760-22814324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 82
               

               
Conread position:
               
3-579
               

               
Cow position:
               
chrX:24122564-24121978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 147
               

               
Conread position:
               
4-449
               

               
Cow position:
               
chrX:30046752-30046302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 15
               

               
Conread position:
               
4-567
               

               
Cow position:
               
chrX:30369616-30369088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 144
               

               
Conread position:
               
4-579
               

               
Cow position:
               
chrX:21222289-21222870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
6-442
               

               
Cow position:
               
chrX:28549262-28549695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
6, 18
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chrX:17668925-17668364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 21
               

               
Conread position:
               
6-579
               

               
Cow position:
               
chrX:16236687-16237251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 42
               

               
Conread position:
               
7-406
               

               
Cow position:
               
chrX:5834798-5834399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
7-568
               

               
Cow position:
               
chrX:21290122-21289560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 20
               

               
Conread position:
               
7-579
               

               
Cow position:
               
chrX:24137032-24136457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 20
               

               
Conread position:
               
9-202
               

               
Cow position:
               
chrX:9901232-9901042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
95, 52
               

               
Conread position:
               
9-311
               

               
Cow position:
               
chrX:12182557-12182868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
16, 122
               

               
Conread position:
               
9-567
               

               
Cow position:
               
chrX:18532367-18532925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 134
               

               
Conread position:
               
9-579
               

               
Cow position:
               
chrX:24275037-24275612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 18
               

               
Conread position:
               
16-311
               

               
Cow position:
               
chrX:21586405-21586703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 152
               

               
Conread position:
               
16-573
               

               
Cow position:
               
chrX:11669062-11668506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
284, 83
               

               
Conread position:
               
17-235
               

               
Cow position:
               
chrX:12704543-12704324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
17-259
               

               
Cow position:
               
chrX:16565244-16565489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
17-279
               

               
Cow position:
               
chrX:12672172-12671908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
17-471
               

               
Cow position:
               
chrX:8963679-8963224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
17-515
               

               
Cow position:
               
chrX:12341565-12342071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 320
               

               
Conread position:
               
17-520
               

               
Cow position:
               
chrX:24380677-24381195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 141
               

               
Conread position:
               
17-552
               

               
Cow position:
               
chrX:19927683-19928210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 111
               

               
Conread position:
               
17-554
               

               
Cow position:
               
chrX:12655377-12654838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 87
               

               
Conread position:
               
17-568
               

               
Cow position:
               
chrX:8586464-8587025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
17-569
               

               
Cow position:
               
chrX:5862767-5863330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
17-569
               

               
Cow position:
               
chrX:8669963-8670524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 133
               

               
Conread position:
               
17-573
               

               
Cow position:
               
chrX:9193272-9192708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 46
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:2101237-2101801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:3085529-3084960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:5284356-5283793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:5324339-5323781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:7029559-7030130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 351
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:7092977-7093540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 126
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:8479075-8479643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:9007713-9008280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:11465628-11465060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 154
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:12280886-12280327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:12289565-12288994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:13077320-13076755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 121
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:13097894-13097329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 121
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:16275061-16275619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:16363753-16363182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:17479153-17478580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:17632457-17631882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 111
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:20316684-20316113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 130
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:21305145-21304584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:21339772-21340342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 138
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:22526232-22525662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:22619944-22619367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:26401097-26400525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 130
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:28635044-28634474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 99
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:28759250-28758699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 110
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:30179615-30179053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 90
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:31187864-31187303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 30
               

               
Conread position:
               
17-579
               

               
Cow position:
               
chrX:39521276-39521849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 114
               

               
Conread position:
               
17-580
               

               
Cow position:
               
chrX:24485044-24484469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
18-456
               

               
Cow position:
               
chrX:24325775-24325323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 130
               

               
Conread position:
               
18-569
               

               
Cow position:
               
chrX:22893990-22893435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 176
               

               
Conread position:
               
18-579
               

               
Cow position:
               
chrX:12804481-12803922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 109
               

               
Conread position:
               
18-579
               

               
Cow position:
               
chrX:31192389-31191861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
86, 110
               

               
Conread position:
               
18-579
               

               
Cow position:
               
chrX:37848383-37848956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 130
               

               
Conread position:
               
20-568
               

               
Cow position:
               
chrX:40057688-40057134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 126
               

               
Conread position:
               
20-573
               

               
Cow position:
               
chrX:29951192-29950637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
20-579
               

               
Cow position:
               
chrX:21602260-21602821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 129
               

               
Conread position:
               
20-579
               

               
Cow position:
               
chrX:21633209-21632645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 139
               

               
Conread position:
               
21-273
               

               
Cow position:
               
chrX:23276493-23276748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 128
               

               
Conread position:
               
21-387
               

               
Cow position:
               
chrX:38145434-38145812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 128
               

               
Conread position:
               
21-573
               

               
Cow position:
               
chrX:970148-970703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 133
               

               
Conread position:
               
21-573
               

               
Cow position:
               
chrX:2483262-2482702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
21-573
               

               
Cow position:
               
chrX:16698675-16699236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 128
               

               
Conread position:
               
21-573
               

               
Cow position:
               
chrX:23456197-23455642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 133
               

               
Conread position:
               
21-573
               

               
Cow position:
               
chrX:26527349-26527912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 133
               

               
Conread position:
               
21-573
               

               
Cow position:
               
chrX:30232730-30232172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 127
               

               
Conread position:
               
21-579
               

               
Cow position:
               
chrX:1546308-1546877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 133
               

               
Conread position:
               
21-579
               

               
Cow position:
               
chrX:13413742-13413174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 133
               

               
Conread position:
               
21-579
               

               
Cow position:
               
chrX:18955141-18954580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 133
               

               
Conread position:
               
21-579
               

               
Cow position:
               
chrX:22487562-22488123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 128
               

               
Conread position:
               
21-579
               

               
Cow position:
               
chrX:29854190-29853624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 133
               

               
Conread position:
               
22-305
               

               
Cow position:
               
chrX:25187034-25187322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 127
               

               
Conread position:
               
23-392
               

               
Cow position:
               
chrX:25332456-25332846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 44
               

               
Conread position:
               
23-456
               

               
Cow position:
               
chrX:39717174-39717619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
23-568
               

               
Cow position:
               
chrX:24114791-24114256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
23-586
               

               
Cow position:
               
chrX:22777694-22778261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
23-587
               

               
Cow position:
               
chrX:13007256-13006675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 125
               

               
Conread position:
               
24-579
               

               
Cow position:
               
chrX:27426942-27426374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 126
               

               
Conread position:
               
27-569
               

               
Cow position:
               
chrX:30666559-30666007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 121
               

               
Conread position:
               
27-573
               

               
Cow position:
               
chrX:2603428-2603985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 49
               

               
Conread position:
               
27-579
               

               
Cow position:
               
chrX:2787833-2787286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
82, 128
               

               
Conread position:
               
27-579
               

               
Cow position:
               
chrX:5395583-5395020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 121
               

               
Conread position:
               
27-579
               

               
Cow position:
               
chrX:6873693-6873129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 157
               

               
Conread position:
               
27-579
               

               
Cow position:
               
chrX:7751286-7751842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 100
               

               
Conread position:
               
27-579
               

               
Cow position:
               
chrX:8454138-8454694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
27-579
               

               
Cow position:
               
chrX:13398735-13398178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 117
               

               
Conread position:
               
27-579
               

               
Cow position:
               
chrX:18218781-18219339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
27-579
               

               
Cow position:
               
chrX:24088782-24089344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 116
               

               
Conread position:
               
27-579
               

               
Cow position:
               
chrX:32466633-32467194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 128
               

               
Conread position:
               
28-376
               

               
Cow position:
               
chrX:28522317-28521956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
28-397
               

               
Cow position:
               
chrX:32430065-32430447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 195
               

               
Conread position:
               
28-550
               

               
Cow position:
               
chrX:27990396-27989874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 188
               

               
Conread position:
               
28-574
               

               
Cow position:
               
chrX:30174279-30173733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 99
               

               
Conread position:
               
30-308
               

               
Cow position:
               
chrX:11534869-11535147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 118
               

               
Conread position:
               
30-309
               

               
Cow position:
               
chrX:26628932-26628654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 118
               

               
Conread position:
               
30-579
               

               
Cow position:
               
chrX:20803522-20804068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 118
               

               
Conread position:
               
31-484
               

               
Cow position:
               
chrX:3422056-3421592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 328
               

               
Conread position:
               
32-520
               

               
Cow position:
               
chrX:4795309-4795810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 111
               

               
Conread position:
               
32-566
               

               
Cow position:
               
chrX:30710739-30711284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 122
               

               
Conread position:
               
32-568
               

               
Cow position:
               
chrX:6283667-6283163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 30
               

               
Conread position:
               
33-579
               

               
Cow position:
               
chrX:20795998-20796547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 8
               

               
Conread position:
               
36-309
               

               
Cow position:
               
chrX:5337182-5336903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
64, 113
               

               
Conread position:
               
36-579
               

               
Cow position:
               
chrX:15180043-15179489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 348
               

               
Conread position:
               
37-574
               

               
Cow position:
               
chrX:21828916-21829461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 117
               

               
Conread position:
               
38-579
               

               
Cow position:
               
chrX:23046537-23047088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 89
               

               
Conread position:
               
38-579
               

               
Cow position:
               
chrX:35017221-35017750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
39-175
               

               
Cow position:
               
chrX:30990562-30990426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
68, 109
               

               
Conread position:
               
44-579
               

               
Cow position:
               
chrX:12478122-12478663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
47-433
               

               
Cow position:
               
chrX:29092903-29093302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 108
               

               
Conread position:
               
63-551
               

               
Cow position:
               
chrX:26428614-26428131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 67
               

               
Conread position:
               
65-579
               

               
Cow position:
               
chrX:1833256-1833770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 66
               

               
Conread position:
               
65-579
               

               
Cow position:
               
chrX:14787449-14786930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
67-566
               

               
Cow position:
               
chrX:6909912-6909404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
72-579
               

               
Cow position:
               
chrX:23018757-23019267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 85
               

               
Conread position:
               
83-573
               

               
Cow position:
               
chrX:30184453-30183958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 72
               

               
Conread position:
               
83-579
               

               
Cow position:
               
chrX:10532123-10531616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 65
               

               
Conread position:
               
92-466
               

               
Cow position:
               
chrX:13052116-13052495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 146
               

               
Conread position:
               
96-555
               

               
Cow position:
               
chrX:31198050-31198527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 58
               

               
Conread position:
               
99-579
               

               
Cow position:
               
chrX:27494156-27494652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 49
               

               
Conread position:
               
102-579
               

               
Cow position:
               
chrX:26504651-26505126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 45
               

               
Conread position:
               
103-501
               

               
Cow position:
               
chrX:12316698-12316300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
111-579
               

               
Cow position:
               
chrX:7481071-7481545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
133-579
               

               
Cow position:
               
chrX:29873075-29872615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 362
               

               
Conread position:
               
136-525
               

               
Cow position:
               
chrX:24482003-24481600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 240
               

               
Conread position:
               
137-568
               

               
Cow position:
               
chrX:22583222-22582769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
137-573
               

               
Cow position:
               
chrX:319961-320404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 16
               

               
Conread position:
               
147-579
               

               
Cow position:
               
chrX:982166-982580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
154-579
               

               
Cow position:
               
chrX:2563351-2562915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 340
               

               
Conread position:
               
158-550
               

               
Cow position:
               
chrX:12998050-12997669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
79, 253
               

               
Conread position:
               
171-560
               

               
Cow position:
               
chrX:21794622-21795018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 193
               

               
Conread position:
               
177-496
               

               
Cow position:
               
chrX:6276061-6275733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 313
               

               
Conread position:
               
178-520
               

               
Cow position:
               
chrX:35020516-35020870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 280
               

               
Conread position:
               
179-574
               

               
Cow position:
               
chrX:28562679-28562277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 199
               

               
Conread position:
               
207-579
               

               
Cow position:
               
chrX:35529420-35529802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 286
               

               
Conread position:
               
221-573
               

               
Cow position:
               
chrX:5839915-5840268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
223-579
               

               
Cow position:
               
chrX:28875828-28875481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 74
               

               
Conread position:
               
231-585
               

               
Cow position:
               
chrX:29285021-29285365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 20
               

               
Conread position:
               
232-573
               

               
Cow position:
               
chrX:32468306-32468640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
47, 152
               

               
Conread position:
               
232-579
               

               
Cow position:
               
chrX:23041526-23041181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
233-568
               

               
Cow position:
               
chrX:34988470-34988829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
38, 142
               

               
Conread position:
               
235-568
               

               
Cow position:
               
chrX:18660189-18659851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
241-579
               

               
Cow position:
               
chrX:2537174-2536838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 249
               

               
Conread position:
               
245-452
               

               
Cow position:
               
chrX:16935954-16935741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
27, 203
               

               
Conread position:
               
245-579
               

               
Cow position:
               
chrX:9124960-9125301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 245
               

               
Conread position:
               
262-579
               

               
Cow position:
               
chrX:41411402-41411079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 227
               

               
Conread position:
               
283-573
               

               
Cow position:
               
chrX:40247674-40247378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
40, 139
               

               
Conread position:
               
283-579
               

               
Cow position:
               
chrX:39564289-39563989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 204
               

               
Conread position:
               
294-568
               

               
Cow position:
               
chrX:12670207-12669933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 5
               

               
Conread position:
               
309-579
               

               
Cow position:
               
chrX:29947379-29947649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 174
               

               
Conread position:
               
312-574
               

               
Cow position:
               
chrX:28603780-28603521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
328-573
               

               
Cow position:
               
chrX:21586860-21587101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
328-574
               

               
Cow position:
               
chrX:26628339-26628095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
328-579
               

               
Cow position:
               
chrX:1943350-1943102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
328-579
               

               
Cow position:
               
chrX:37811855-37812104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
334-574
               

               
Cow position:
               
chrX:12973532-12973291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
44, 149
               

               
Conread position:
               
338-579
               

               
Cow position:
               
chrX:44386176-44386418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
176, 30
               

               
Conread position:
               
368-535
               

               
Cow position:
               
chrX:35390360-35390196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
368-579
               

               
Cow position:
               
chrX:5336735-5336527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
368-579
               

               
Cow position:
               
chrX:16461410-16461619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
369-573
               

               
Cow position:
               
chrX:28584714-28584916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
378-573
               

               
Cow position:
               
chrX:38146048-38146241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
384-579
               

               
Cow position:
               
chrX:29757908-29758103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
6, 115
               

               
Conread position:
               
387-579
               

               
Cow position:
               
chrX:5834212-5834022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
420-579
               

               
Cow position:
               
chrX:31724809-31724968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
7, 63
               

               
Conread position:
               
425-579
               

               
Cow position:
               
chrX:11663715-11663563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
425-579
               

               
Cow position:
               
chrX:38576033-38575877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
442-568
               

               
Cow position:
               
chrX:24139219-24139095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
444-586
               

               
Cow position:
               
chrX:39719246-39719387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
460-579
               

               
Cow position:
               
chrX:30044320-30044203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               
Show alignments to all cow chromosomes.