Cow genome map
| Conread name: | LyN1-MLN01F070009 |
| Conread position: | 1-145 |
| Cow position: | chr1:76020327-76020475 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-146 |
| Cow position: | chr1:60033306-60033449 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-150 |
| Cow position: | chr1:72284949-72285104 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-152 |
| Cow position: | chr1:97482288-97482430 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-186 |
| Cow position: | chr1:39702114-39701924 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 77, 36 |
| Conread position: | 1-186 |
| Cow position: | chr1:81356680-81356873 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-186 |
| Cow position: | chr1:86574440-86574248 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 89, 57 |
| Conread position: | 1-221 |
| Cow position: | chr1:15049416-15049195 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 76 |
| Conread position: | 1-227 |
| Cow position: | chr1:35785393-35785155 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 73, 194 |
| Conread position: | 1-249 |
| Cow position: | chr1:42053971-42054217 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 146, 47 |
| Conread position: | 1-256 |
| Cow position: | chr1:51980585-51980330 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 187 |
| Conread position: | 1-260 |
| Cow position: | chr1:70068797-70069064 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 191 |
| Conread position: | 1-265 |
| Cow position: | chr1:86505739-86506011 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 192 |
| Conread position: | 1-266 |
| Cow position: | chr1:71792543-71792271 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 191 |
| Conread position: | 1-266 |
| Cow position: | chr1:95474296-95474561 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 80 |
| Conread position: | 1-267 |
| Cow position: | chr1:101833997-101833740 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 146, 51 |
| Conread position: | 1-267 |
| Cow position: | chr1:102815087-102814813 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 191 |
| Conread position: | 1-271 |
| Cow position: | chr1:71666860-71667146 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1-276 |
| Cow position: | chr1:53371982-53371699 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 260 |
| Conread position: | 1-281 |
| Cow position: | chr1:16116785-16117073 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 1-282 |
| Cow position: | chr1:40509632-40509933 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 73, 203 |
| Conread position: | 1-285 |
| Cow position: | chr1:68854563-68854277 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 35 |
| Conread position: | 1-295 |
| Cow position: | chr1:20798435-20798131 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 42 |
| Conread position: | 1-300 |
| Cow position: | chr1:29038154-29037847 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 180 |
| Conread position: | 1-300 |
| Cow position: | chr1:38545102-38545409 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 1-305 |
| Cow position: | chr1:42887889-42888181 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 149, 57 |
| Conread position: | 1-311 |
| Cow position: | chr1:42875046-42875360 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 193 |
| Conread position: | 1-311 |
| Cow position: | chr1:61747839-61748154 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 190 |
| Conread position: | 1-311 |
| Cow position: | chr1:68951013-68950703 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 61 |
| Conread position: | 1-317 |
| Cow position: | chr1:46821228-46820903 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 1-317 |
| Cow position: | chr1:68282151-68281838 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 1-322 |
| Cow position: | chr1:26446761-26446438 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 92 |
| Conread position: | 1-322 |
| Cow position: | chr1:31352019-31352342 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 191 |
| Conread position: | 1-334 |
| Cow position: | chr1:44078809-44079147 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 163 |
| Conread position: | 2-207 |
| Cow position: | chr1:21132246-21132456 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 2-223 |
| Cow position: | chr1:44836904-44837134 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 191 |
| Conread position: | 2-223 |
| Cow position: | chr1:79002509-79002742 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 59, 194 |
| Conread position: | 2-254 |
| Cow position: | chr1:31238571-31238835 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 195 |
| Conread position: | 2-272 |
| Cow position: | chr1:2998908-2998628 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 86, 135 |
| Conread position: | 2-311 |
| Cow position: | chr1:19483640-19483947 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 46 |
| Conread position: | 2-317 |
| Cow position: | chr1:52434635-52434314 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 185 |
| Conread position: | 2-322 |
| Cow position: | chr1:93111751-93112063 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 199, 79 |
| Conread position: | 3-145 |
| Cow position: | chr1:100435919-100435777 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-285 |
| Cow position: | chr1:38401213-38400944 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 147, 43 |
| Conread position: | 3-311 |
| Cow position: | chr1:52054432-52054116 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 6-289 |
| Cow position: | chr1:24921909-24922190 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 31 |
| Conread position: | 8-266 |
| Cow position: | chr1:31515520-31515773 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 139, 28 |
| Conread position: | 22-284 |
| Cow position: | chr1:92279232-92279488 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 18, 6 |
| Conread position: | 22-311 |
| Cow position: | chr1:56475587-56475296 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 6 |
| Conread position: | 26-152 |
| Cow position: | chr1:8514864-8514734 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 27-311 |
| Cow position: | chr1:55145649-55145341 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 49, 173 |
| Conread position: | 45-268 |
| Cow position: | chr1:50764707-50764485 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 102, 36 |
| Conread position: | 61-256 |
| Cow position: | chr1:40532336-40532529 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 86, 32 |
| Conread position: | 62-265 |
| Cow position: | chr1:43448958-43449169 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 66-300 |
| Cow position: | chr1:99581911-99582152 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 81, 122 |
| Conread position: | 69-268 |
| Cow position: | chr1:30033812-30033611 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 123 |
| Conread position: | 77-283 |
| Cow position: | chr1:72864479-72864270 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 71, 111 |
| Conread position: | 94-266 |
| Cow position: | chr1:101523886-101524059 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 88, 49 |
| Conread position: | 105-317 |
| Cow position: | chr1:29656694-29656475 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 42, 101 |
Show alignments to all cow chromosomes.