Cow genome map
| Conread name: | LyN1-MLN01F070009 |
| Conread position: | 1-172 |
| Cow position: | chrX:27446048-27445871 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 85, 35 |
| Conread position: | 1-179 |
| Cow position: | chrX:40827371-40827552 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 147, 106 |
| Conread position: | 1-184 |
| Cow position: | chrX:10438565-10438744 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 146, 35 |
| Conread position: | 1-186 |
| Cow position: | chrX:36250489-36250679 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 80, 54 |
| Conread position: | 1-191 |
| Cow position: | chrX:35409007-35408811 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-222 |
| Cow position: | chrX:32419544-32419327 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 1-229 |
| Cow position: | chrX:34238147-34237915 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 116 |
| Conread position: | 1-231 |
| Cow position: | chrX:30421775-30422000 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 85, 28 |
| Conread position: | 1-236 |
| Cow position: | chrX:12996482-12996734 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 74, 199 |
| Conread position: | 1-247 |
| Cow position: | chrX:1729485-1729738 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 95, 240 |
| Conread position: | 1-254 |
| Cow position: | chrX:15151302-15151563 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 208 |
| Conread position: | 1-254 |
| Cow position: | chrX:37815964-37815702 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 85, 191 |
| Conread position: | 1-256 |
| Cow position: | chrX:5639564-5639811 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 200, 147 |
| Conread position: | 1-266 |
| Cow position: | chrX:11855542-11855265 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 195 |
| Conread position: | 1-266 |
| Cow position: | chrX:21592664-21592392 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 191 |
| Conread position: | 1-268 |
| Cow position: | chrX:40070237-40070511 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 190 |
| Conread position: | 1-269 |
| Cow position: | chrX:19595298-19595020 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 54 |
| Conread position: | 1-274 |
| Cow position: | chrX:34222122-34221859 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 147, 51 |
| Conread position: | 1-274 |
| Cow position: | chrX:35609361-35609079 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 77, 193 |
| Conread position: | 1-281 |
| Cow position: | chrX:12290111-12289810 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 60, 208 |
| Conread position: | 1-281 |
| Cow position: | chrX:45236839-45236551 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 92 |
| Conread position: | 1-282 |
| Cow position: | chrX:41304858-41305140 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 78, 198 |
| Conread position: | 1-300 |
| Cow position: | chrX:29849256-29849557 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 191 |
| Conread position: | 1-300 |
| Cow position: | chrX:35937708-35938009 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 1-312 |
| Cow position: | chrX:23969724-23969407 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 35 |
| Conread position: | 1-322 |
| Cow position: | chrX:38852532-38852204 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 118 |
| Conread position: | 2-233 |
| Cow position: | chrX:160800-160562 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 87, 62 |
| Conread position: | 2-281 |
| Cow position: | chrX:323287-322999 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 191 |
| Conread position: | 3-243 |
| Cow position: | chrX:35847596-35847348 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 86, 188 |
| Conread position: | 3-260 |
| Cow position: | chrX:25848172-25847907 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 86, 130 |
| Conread position: | 19-305 |
| Cow position: | chrX:34554099-34553808 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 179 |
| Conread position: | 22-278 |
| Cow position: | chrX:41527163-41527426 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 169 |
| Conread position: | 41-294 |
| Cow position: | chrX:44901466-44901216 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 45-300 |
| Cow position: | chrX:45400695-45400953 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 102, 36 |
| Conread position: | 52-266 |
| Cow position: | chrX:42222451-42222673 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 24, 148 |
| Conread position: | 52-304 |
| Cow position: | chrX:150794-150534 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 36, 141 |
| Conread position: | 62-281 |
| Cow position: | chrX:28605784-28606000 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 112 |
| Conread position: | 66-311 |
| Cow position: | chrX:4407187-4406938 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 122 |
| Conread position: | 67-266 |
| Cow position: | chrX:45373806-45374008 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 79, 12 |
| Conread position: | 74-249 |
| Cow position: | chrX:4130291-4130470 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 114 |
| Conread position: | 82-266 |
| Cow position: | chrX:20675156-20674968 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 106 |
Show alignments to all cow chromosomes.