Cow genome map

Conread name: LyN1-MLN01G010084

Conread position: 1-415
Cow position: chr1:8471039-8470616 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 0

Conread position: 1-425
Cow position: chr1:72086723-72087155 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 19

Conread position: 8-192
Cow position: chr1:88676585-88676769 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 8-399
Cow position: chr1:89111962-89112351 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 107

Conread position: 8-425
Cow position: chr1:85795077-85795498 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 344

Conread position: 10-423
Cow position: chr1:74039803-74039398 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 267
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 163, 7

Conread position: 11-347
Cow position: chr1:8528288-8527937 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 104

Conread position: 11-424
Cow position: chr1:77104229-77103813 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 211

Conread position: 11-425
Cow position: chr1:55044129-55043708 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 256

Conread position: 16-425
Cow position: chr1:52053959-52054376 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 84

Conread position: 17-183
Cow position: chr1:33039893-33039727 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 17-183
Cow position: chr1:59203124-59202958 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 17-185
Cow position: chr1:57526415-57526583 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 130
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 17-274
Cow position: chr1:98534736-98535001 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 188
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 175, 124

Conread position: 17-330
Cow position: chr1:54296004-54295686 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 121, 193

Conread position: 17-336
Cow position: chr1:23040234-23040536 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 232
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 267, 75

Conread position: 17-351
Cow position: chr1:81302254-81302596 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 277

Conread position: 17-375
Cow position: chr1:79589998-79590357 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 45

Conread position: 17-378
Cow position: chr1:22529667-22529302 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 15

Conread position: 17-390
Cow position: chr1:93112227-93111829 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 34

Conread position: 17-392
Cow position: chr1:3339806-3340191 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 105

Conread position: 17-399
Cow position: chr1:57958418-57958027 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 60

Conread position: 17-403
Cow position: chr1:7324210-7324605 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 17-418
Cow position: chr1:11324647-11325037 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 191

Conread position: 17-418
Cow position: chr1:21677940-21678343 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 26

Conread position: 17-418
Cow position: chr1:88563772-88563369 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 68

Conread position: 17-421
Cow position: chr1:37542150-37541758 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 34

Conread position: 17-423
Cow position: chr1:31534991-31535407 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 17-423
Cow position: chr1:71559605-71559195 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 17-423
Cow position: chr1:82479123-82479538 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 94

Conread position: 17-424
Cow position: chr1:6197137-6196725 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 117

Conread position: 17-424
Cow position: chr1:28677209-28677603 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 60

Conread position: 17-424
Cow position: chr1:33716099-33716515 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 17-424
Cow position: chr1:33854406-33854822 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 17-424
Cow position: chr1:69769958-69770373 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 231

Conread position: 17-425
Cow position: chr1:10725763-10726179 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 273

Conread position: 17-425
Cow position: chr1:20527299-20527715 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 379

Conread position: 17-425
Cow position: chr1:21377419-21377002 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 17-425
Cow position: chr1:29037681-29038096 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 76

Conread position: 17-425
Cow position: chr1:35598671-35598255 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 0

Conread position: 17-425
Cow position: chr1:49268022-49268436 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 290

Conread position: 17-425
Cow position: chr1:55273903-55273488 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 379

Conread position: 17-425
Cow position: chr1:55780011-55780424 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 74

Conread position: 17-425
Cow position: chr1:56205671-56205258 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 302

Conread position: 17-425
Cow position: chr1:61342563-61342154 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 75

Conread position: 17-425
Cow position: chr1:67078685-67078271 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 124

Conread position: 17-425
Cow position: chr1:73565339-73564922 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 17-425
Cow position: chr1:76618334-76617919 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 7

Conread position: 17-425
Cow position: chr1:77554858-77554447 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 24

Conread position: 17-425
Cow position: chr1:78921874-78921457 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 17-425
Cow position: chr1:79553635-79554051 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 0

Conread position: 17-425
Cow position: chr1:89493091-89492681 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 267

Conread position: 17-425
Cow position: chr1:91902158-91902575 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 17-425
Cow position: chr1:99916579-99916995 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 54

Conread position: 17-426
Cow position: chr1:18195751-18196152 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 58

Conread position: 17-427
Cow position: chr1:22012821-22012405 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 127

Conread position: 18-425
Cow position: chr1:23098780-23099186 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 15

Conread position: 19-424
Cow position: chr1:57970455-57970058 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 52

Conread position: 20-198
Cow position: chr1:86363612-86363790 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 20-398
Cow position: chr1:92279651-92279288 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 264
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 42, 64

Conread position: 20-422
Cow position: chr1:55145187-55145599 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 0

Conread position: 21-425
Cow position: chr1:29428740-29429160 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 22-350
Cow position: chr1:31191280-31190950 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 299

Conread position: 30-424
Cow position: chr1:99117166-99117569 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 272

Conread position: 34-425
Cow position: chr1:99628906-99628527 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 166

Conread position: 37-414
Cow position: chr1:77165999-77166371 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 64

Conread position: 39-333
Cow position: chr1:92553615-92553320 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 209
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 40, 22

Conread position: 39-397
Cow position: chr1:72864110-72864473 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 40-414
Cow position: chr1:31400268-31399914 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 267
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 174, 57

Conread position: 44-302
Cow position: chr1:60342222-60342488 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 147, 222

Conread position: 53-398
Cow position: chr1:89186283-89185935 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 157

Conread position: 68-286
Cow position: chr1:81860320-81860093 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 123, 0

Conread position: 80-414
Cow position: chr1:40088577-40088921 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 80-425
Cow position: chr1:52371174-52371528 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 82-426
Cow position: chr1:58197234-58196893 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 83

Conread position: 83-423
Cow position: chr1:92921031-92920682 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 90-327
Cow position: chr1:64595098-64594852 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 101, 0

Conread position: 105-414
Cow position: chr1:71690783-71691098 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 219
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 86, 148

Conread position: 116-310
Cow position: chr1:10469084-10468881 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 75, 134

Conread position: 117-425
Cow position: chr1:79255234-79255540 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 37

Conread position: 118-398
Cow position: chr1:22253313-22253602 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 165

Conread position: 134-414
Cow position: chr1:26838211-26838492 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 63, 232

Conread position: 140-425
Cow position: chr1:31352364-31352077 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 69, 110

Conread position: 141-365
Cow position: chr1:22909132-22909361 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 178
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 50, 209

Conread position: 141-398
Cow position: chr1:73870115-73870383 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 533-813
Cow position: chr1:62141119-62140842 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 192
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 101

Conread position: 534-813
Cow position: chr1:11854413-11854132 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 74, 17

Conread position: 536-813
Cow position: chr1:30033821-30034109 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 38, 94

Conread position: 540-809
Cow position: chr1:15743361-15743632 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 189
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 73, 11

Conread position: 540-813
Cow position: chr1:80901937-80901676 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 192
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 10, 0

Conread position: 541-788
Cow position: chr1:23040841-23041096 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 45, 11

Conread position: 541-809
Cow position: chr1:68783368-68783105 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 70, 9

Conread position: 541-813
Cow position: chr1:61220973-61221237 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 67, 10

Conread position: 548-812
Cow position: chr1:38687772-38688032 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 64, 131

Conread position: 553-813
Cow position: chr1:23634607-23634337 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 194
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 59, 0

Conread position: 554-816
Cow position: chr1:42176496-42176236 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 55, 149

Show alignments to all cow chromosomes.