Cow genome map
| Conread name: | LyN1-MLN01G010084 |
| Conread position: | 9-425 |
| Cow position: | chr3:2866646-2866221 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 9-425 |
| Cow position: | chr3:24265211-24265632 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 56 |
| Conread position: | 9-425 |
| Cow position: | chr3:72633082-72633506 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 281 |
| Conread position: | 11-363 |
| Cow position: | chr3:74848153-74847809 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 97 |
| Conread position: | 11-413 |
| Cow position: | chr3:34087187-34086782 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 330 |
| Conread position: | 17-183 |
| Cow position: | chr3:2921274-2921440 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-183 |
| Cow position: | chr3:48846023-48846188 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 17-183 |
| Cow position: | chr3:63276842-63276681 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 17-185 |
| Cow position: | chr3:65178027-65178194 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 17-194 |
| Cow position: | chr3:14054290-14054467 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-259 |
| Cow position: | chr3:19798135-19797884 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-347 |
| Cow position: | chr3:54291280-54291609 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 74 |
| Conread position: | 17-385 |
| Cow position: | chr3:29574109-29573734 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 313 |
| Conread position: | 17-387 |
| Cow position: | chr3:24351711-24352082 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 17-395 |
| Cow position: | chr3:27866673-27867065 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 17-398 |
| Cow position: | chr3:31224296-31224681 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 31 |
| Conread position: | 17-399 |
| Cow position: | chr3:55374102-55374482 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 140 |
| Conread position: | 17-405 |
| Cow position: | chr3:38862752-38863133 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 17-414 |
| Cow position: | chr3:50204582-50204987 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-414 |
| Cow position: | chr3:64376693-64376293 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 16 |
| Conread position: | 17-423 |
| Cow position: | chr3:20475530-20475939 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 17-423 |
| Cow position: | chr3:74060487-74060900 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 26 |
| Conread position: | 17-425 |
| Cow position: | chr3:2074800-2075214 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 7 |
| Conread position: | 17-425 |
| Cow position: | chr3:6838046-6838463 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr3:7476903-7476486 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr3:13723695-13723278 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr3:15416483-15416900 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr3:20379700-20379285 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr3:20795310-20795727 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr3:21000072-20999638 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 75 |
| Conread position: | 17-425 |
| Cow position: | chr3:31021699-31022113 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 247 |
| Conread position: | 17-425 |
| Cow position: | chr3:44926831-44927247 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 74 |
| Conread position: | 17-425 |
| Cow position: | chr3:47986456-47986873 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr3:49611191-49610777 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 325 |
| Conread position: | 17-425 |
| Cow position: | chr3:56102758-56103173 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 70 |
| Conread position: | 17-425 |
| Cow position: | chr3:64317756-64318171 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 128 |
| Conread position: | 17-425 |
| Cow position: | chr3:64875790-64876206 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr3:65084951-65085367 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 250 |
| Conread position: | 17-425 |
| Cow position: | chr3:79668124-79668544 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 17-829 |
| Cow position: | chr3:68510319-68509501 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 19-425 |
| Cow position: | chr3:37972053-37972462 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 189 |
| Conread position: | 19-425 |
| Cow position: | chr3:46224913-46225313 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 163 |
| Conread position: | 20-399 |
| Cow position: | chr3:4030773-4031149 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 68 |
| Conread position: | 20-425 |
| Cow position: | chr3:66968859-66968445 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 22-414 |
| Cow position: | chr3:22352639-22353036 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 32-380 |
| Cow position: | chr3:62794044-62793693 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 161 |
| Conread position: | 37-424 |
| Cow position: | chr3:5886923-5887316 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 274 |
| Conread position: | 39-387 |
| Cow position: | chr3:64171281-64171635 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 217 |
| Conread position: | 39-425 |
| Cow position: | chr3:16657828-16657439 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 77 |
| Conread position: | 39-425 |
| Cow position: | chr3:26722774-26722378 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 39-425 |
| Cow position: | chr3:78024397-78024006 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 302 |
| Conread position: | 40-425 |
| Cow position: | chr3:42500107-42500495 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 41-425 |
| Cow position: | chr3:46858243-46857850 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 42-425 |
| Cow position: | chr3:36671579-36671184 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 44-374 |
| Cow position: | chr3:3300686-3301024 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 200 |
| Conread position: | 44-374 |
| Cow position: | chr3:34116328-34115981 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 49-393 |
| Cow position: | chr3:15663395-15663047 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 65-425 |
| Cow position: | chr3:77697383-77697049 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 67-374 |
| Cow position: | chr3:64024965-64024648 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 67-398 |
| Cow position: | chr3:19795025-19794686 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 336 |
| Conread position: | 73-425 |
| Cow position: | chr3:579247-579606 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 135 |
| Conread position: | 81-348 |
| Cow position: | chr3:42602737-42603026 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 82-371 |
| Cow position: | chr3:79595717-79596012 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 109, 29 |
| Conread position: | 82-425 |
| Cow position: | chr3:13248938-13248587 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 149 |
| Conread position: | 83-415 |
| Cow position: | chr3:59332664-59333009 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 81, 145 |
| Conread position: | 92-399 |
| Cow position: | chr3:2117537-2117853 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 217 |
| Conread position: | 102-414 |
| Cow position: | chr3:46682935-46683255 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 272 |
| Conread position: | 109-709 |
| Cow position: | chr3:70322564-70321947 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 202 |
| Conread position: | 117-425 |
| Cow position: | chr3:14279803-14280110 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 92 |
| Conread position: | 119-425 |
| Cow position: | chr3:64655329-64655638 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 72, 232 |
| Conread position: | 125-425 |
| Cow position: | chr3:44536863-44536539 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 66, 288 |
| Conread position: | 126-425 |
| Cow position: | chr3:41057089-41057393 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 71, 8 |
| Conread position: | 149-415 |
| Cow position: | chr3:46006252-46006515 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 104, 58 |
| Conread position: | 534-663 |
| Cow position: | chr3:70336283-70336155 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 540-779 |
| Cow position: | chr3:61242801-61243041 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 48, 11 |
| Conread position: | 540-812 |
| Cow position: | chr3:73763215-73762941 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 72, 11 |
| Conread position: | 540-813 |
| Cow position: | chr3:32221129-32221405 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 541-743 |
| Cow position: | chr3:6897248-6897448 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 10 |
| Conread position: | 548-813 |
| Cow position: | chr3:24455112-24454857 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 64, 105 |
| Conread position: | 552-809 |
| Cow position: | chr3:49336621-49336879 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 60, 27 |
Show alignments to all cow chromosomes.