Cow genome map
| Conread name: | LyN1-MLN01G010084 |
| Conread position: | 1-391 |
| Cow position: | chr5:40791749-40792137 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 8 |
| Conread position: | 1-424 |
| Cow position: | chr5:47560652-47560222 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 8 |
| Conread position: | 7-425 |
| Cow position: | chr5:21189132-21189557 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 290 |
| Conread position: | 8-183 |
| Cow position: | chr5:7276746-7276920 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 9-348 |
| Cow position: | chr5:46650018-46650359 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 126, 54 |
| Conread position: | 9-425 |
| Cow position: | chr5:14543387-14542962 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 9-425 |
| Cow position: | chr5:64061242-64061666 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 10-423 |
| Cow position: | chr5:10921761-10922183 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 9 |
| Conread position: | 11-292 |
| Cow position: | chr5:57983927-57983648 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 11-399 |
| Cow position: | chr5:63312601-63312212 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 86 |
| Conread position: | 17-183 |
| Cow position: | chr5:6615371-6615205 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-230 |
| Cow position: | chr5:6986563-6986352 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 17-292 |
| Cow position: | chr5:3252232-3251953 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 208, 27 |
| Conread position: | 17-295 |
| Cow position: | chr5:70531540-70531259 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 80 |
| Conread position: | 17-378 |
| Cow position: | chr5:59146299-59146669 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-379 |
| Cow position: | chr5:15454699-15455057 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 60 |
| Conread position: | 17-395 |
| Cow position: | chr5:51501806-51502193 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 164 |
| Conread position: | 17-398 |
| Cow position: | chr5:18491328-18491721 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 17-414 |
| Cow position: | chr5:2976708-2977113 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 264 |
| Conread position: | 17-414 |
| Cow position: | chr5:6585531-6585126 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-414 |
| Cow position: | chr5:51746146-51746546 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 191 |
| Conread position: | 17-423 |
| Cow position: | chr5:3970447-3970860 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 325 |
| Conread position: | 17-425 |
| Cow position: | chr5:443387-442970 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 17-425 |
| Cow position: | chr5:1339000-1338582 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 17-425 |
| Cow position: | chr5:3544230-3544635 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 263 |
| Conread position: | 17-425 |
| Cow position: | chr5:3789150-3789562 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 222 |
| Conread position: | 17-425 |
| Cow position: | chr5:5106147-5106562 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 70 |
| Conread position: | 17-425 |
| Cow position: | chr5:7396171-7396582 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 41 |
| Conread position: | 17-425 |
| Cow position: | chr5:17027000-17027405 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 80 |
| Conread position: | 17-425 |
| Cow position: | chr5:24298935-24299352 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr5:24577358-24577776 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr5:31634349-31634771 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 242 |
| Conread position: | 17-425 |
| Cow position: | chr5:37735298-37735714 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 322 |
| Conread position: | 17-425 |
| Cow position: | chr5:49221570-49221160 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 24 |
| Conread position: | 17-425 |
| Cow position: | chr5:51166387-51165971 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 266 |
| Conread position: | 17-425 |
| Cow position: | chr5:52823284-52822869 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 31 |
| Conread position: | 17-425 |
| Cow position: | chr5:55630986-55631403 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr5:58191839-58192254 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 251 |
| Conread position: | 17-425 |
| Cow position: | chr5:58198932-58199348 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 250 |
| Conread position: | 17-425 |
| Cow position: | chr5:59064366-59064782 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 264 |
| Conread position: | 18-270 |
| Cow position: | chr5:72346188-72345914 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 88, 30 |
| Conread position: | 19-414 |
| Cow position: | chr5:46779440-46779842 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 271 |
| Conread position: | 20-412 |
| Cow position: | chr5:27690918-27691306 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 18 |
| Conread position: | 34-424 |
| Cow position: | chr5:6576653-6576252 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 53 |
| Conread position: | 39-399 |
| Cow position: | chr5:31916569-31916924 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 58 |
| Conread position: | 39-413 |
| Cow position: | chr5:18249997-18250374 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 194 |
| Conread position: | 44-425 |
| Cow position: | chr5:45704968-45705350 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 45-338 |
| Cow position: | chr5:27613192-27613476 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 33 |
| Conread position: | 48-426 |
| Cow position: | chr5:34708722-34709109 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 53-379 |
| Cow position: | chr5:17387459-17387125 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 138, 331 |
| Conread position: | 65-425 |
| Cow position: | chr5:15677031-15677398 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 303 |
| Conread position: | 67-392 |
| Cow position: | chr5:75755557-75755878 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 143 |
| Conread position: | 67-402 |
| Cow position: | chr5:50899606-50899946 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 301 |
| Conread position: | 68-387 |
| Cow position: | chr5:43991256-43991583 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 6 |
| Conread position: | 77-414 |
| Cow position: | chr5:26073804-26073460 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 114, 176 |
| Conread position: | 80-402 |
| Cow position: | chr5:57936137-57935793 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 114, 318 |
| Conread position: | 80-425 |
| Cow position: | chr5:55722514-55722868 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 94-395 |
| Cow position: | chr5:35207241-35207551 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 94-425 |
| Cow position: | chr5:58245331-58245671 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 97, 172 |
| Conread position: | 108-426 |
| Cow position: | chr5:29558610-29558929 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 258 |
| Conread position: | 110-424 |
| Cow position: | chr5:39362887-39363210 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 117-422 |
| Cow position: | chr5:16895126-16894816 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 14, 116 |
| Conread position: | 123-275 |
| Cow position: | chr5:69771089-69771252 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 136-384 |
| Cow position: | chr5:8529692-8529943 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 82 |
| Conread position: | 141-383 |
| Cow position: | chr5:60446479-60446729 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 142-413 |
| Cow position: | chr5:46796955-46797227 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 89 |
| Conread position: | 250-657 |
| Cow position: | chr5:15477872-15478285 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 203, 173 |
| Conread position: | 534-813 |
| Cow position: | chr5:39243049-39242768 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 61 |
| Conread position: | 538-788 |
| Cow position: | chr5:69519929-69520183 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 539-813 |
| Cow position: | chr5:70249456-70249728 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 73, 12 |
| Conread position: | 540-829 |
| Cow position: | chr5:10261941-10261651 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 541-812 |
| Cow position: | chr5:41333912-41334183 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 548-675 |
| Cow position: | chr5:31916936-31917061 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 84 |
Show alignments to all cow chromosomes.