Cow genome map
| Conread name: | LyN1-MLN01G010084 |
| Conread position: | 1-185 |
| Cow position: | chr6:48524-48343 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1-425 |
| Cow position: | chr6:17121434-17121867 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 7 |
| Conread position: | 7-425 |
| Cow position: | chr6:3152269-3152693 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 11-425 |
| Cow position: | chr6:43187160-43187587 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 16-399 |
| Cow position: | chr6:57856829-57857222 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 16-418 |
| Cow position: | chr6:24624078-24623670 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 108 |
| Conread position: | 17-192 |
| Cow position: | chr6:43790517-43790340 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 17-198 |
| Cow position: | chr6:2581459-2581643 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 17-206 |
| Cow position: | chr6:42616159-42616347 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 17-301 |
| Cow position: | chr6:66188739-66188446 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-330 |
| Cow position: | chr6:50485712-50485401 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 42 |
| Conread position: | 17-333 |
| Cow position: | chr6:34405362-34405688 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 17-374 |
| Cow position: | chr6:33983877-33984232 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 218 |
| Conread position: | 17-398 |
| Cow position: | chr6:478611-479001 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-399 |
| Cow position: | chr6:53672399-53672785 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 56 |
| Conread position: | 17-400 |
| Cow position: | chr6:32420010-32420401 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 296 |
| Conread position: | 17-414 |
| Cow position: | chr6:28160470-28160876 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-414 |
| Cow position: | chr6:40813426-40813828 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 195 |
| Conread position: | 17-415 |
| Cow position: | chr6:35600740-35601146 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 287 |
| Conread position: | 17-425 |
| Cow position: | chr6:843767-843349 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr6:1498260-1498679 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 80 |
| Conread position: | 17-425 |
| Cow position: | chr6:7467589-7467173 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 236 |
| Conread position: | 17-425 |
| Cow position: | chr6:11453807-11453389 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr6:12663254-12662844 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 324 |
| Conread position: | 17-425 |
| Cow position: | chr6:14950591-14950182 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 253 |
| Conread position: | 17-425 |
| Cow position: | chr6:15276179-15275762 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 17-425 |
| Cow position: | chr6:19103847-19103430 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chr6:22043947-22043532 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 408 |
| Conread position: | 17-425 |
| Cow position: | chr6:26667963-26667547 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 306 |
| Conread position: | 17-425 |
| Cow position: | chr6:38438667-38439089 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 17-425 |
| Cow position: | chr6:46947880-46948293 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 80 |
| Conread position: | 17-425 |
| Cow position: | chr6:55238757-55239168 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 75 |
| Conread position: | 17-425 |
| Cow position: | chr6:58030840-58031254 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 76 |
| Conread position: | 19-398 |
| Cow position: | chr6:42266802-42267172 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 68 |
| Conread position: | 19-425 |
| Cow position: | chr6:64719381-64719793 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 274 |
| Conread position: | 19-425 |
| Cow position: | chr6:67553295-67553710 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 19-432 |
| Cow position: | chr6:28481399-28481811 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 35 |
| Conread position: | 20-398 |
| Cow position: | chr6:65875216-65874833 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 29 |
| Conread position: | 20-414 |
| Cow position: | chr6:32286618-32287021 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 166 |
| Conread position: | 31-180 |
| Cow position: | chr6:48875265-48875116 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-348 |
| Cow position: | chr6:25180106-25179784 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 164 |
| Conread position: | 32-365 |
| Cow position: | chr6:52557555-52557233 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 44 |
| Conread position: | 33-183 |
| Cow position: | chr6:27172906-27173056 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-301 |
| Cow position: | chr6:49963876-49963598 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 35-392 |
| Cow position: | chr6:8634225-8633879 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 65 |
| Conread position: | 40-388 |
| Cow position: | chr6:66549714-66550043 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 156, 57 |
| Conread position: | 41-423 |
| Cow position: | chr6:19718670-19719045 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 271 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 150, 246 |
| Conread position: | 44-195 |
| Cow position: | chr6:52000828-52000976 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 49-183 |
| Cow position: | chr6:57228686-57228819 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 53-425 |
| Cow position: | chr6:56925829-56926211 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 73-395 |
| Cow position: | chr6:16221011-16220707 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 181, 61 |
| Conread position: | 81-404 |
| Cow position: | chr6:1263287-1263613 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 110, 150 |
| Conread position: | 87-390 |
| Cow position: | chr6:44510221-44510530 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 83 |
| Conread position: | 88-415 |
| Cow position: | chr6:66839520-66839854 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 114, 177 |
| Conread position: | 110-425 |
| Cow position: | chr6:17344354-17344677 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 45 |
| Conread position: | 118-339 |
| Cow position: | chr6:64315388-64315178 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 125-395 |
| Cow position: | chr6:9322172-9322448 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 69, 133 |
| Conread position: | 125-425 |
| Cow position: | chr6:51673941-51674244 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 208-425 |
| Cow position: | chr6:50526772-50526987 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 9 |
| Conread position: | 531-817 |
| Cow position: | chr6:6278242-6278525 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 76, 16 |
| Conread position: | 533-825 |
| Cow position: | chr6:47441687-47441399 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 79, 146 |
| Conread position: | 534-813 |
| Cow position: | chr6:6119545-6119263 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 534-813 |
| Cow position: | chr6:55944981-55944703 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 534-826 |
| Cow position: | chr6:67187009-67187299 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 116 |
| Conread position: | 538-699 |
| Cow position: | chr6:49391877-49391711 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 548-813 |
| Cow position: | chr6:2606930-2607205 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 588-827 |
| Cow position: | chr6:6768650-6768892 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
Show alignments to all cow chromosomes.