Cow genome map
| Conread name: | LyN1-MLN01G010084 |
| Conread position: | 1-403 |
| Cow position: | chrX:2008811-2008413 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 8 |
| Conread position: | 8-424 |
| Cow position: | chrX:31261742-31261320 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 9-399 |
| Cow position: | chrX:29765890-29766288 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 93 |
| Conread position: | 9-425 |
| Cow position: | chrX:10866966-10866555 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 101 |
| Conread position: | 10-414 |
| Cow position: | chrX:31201733-31202144 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 7 |
| Conread position: | 10-424 |
| Cow position: | chrX:4767591-4768002 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 9 |
| Conread position: | 11-414 |
| Cow position: | chrX:672099-671689 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 53 |
| Conread position: | 16-414 |
| Cow position: | chrX:40693835-40693425 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 17-183 |
| Cow position: | chrX:16045870-16046037 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 17-183 |
| Cow position: | chrX:29170883-29170717 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-279 |
| Cow position: | chrX:20741751-20742022 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-319 |
| Cow position: | chrX:5375378-5375068 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 17 |
| Conread position: | 17-395 |
| Cow position: | chrX:28879682-28879308 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 54 |
| Conread position: | 17-413 |
| Cow position: | chrX:16360109-16359704 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-415 |
| Cow position: | chrX:4623055-4622648 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-420 |
| Cow position: | chrX:17782398-17782809 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 408 |
| Conread position: | 17-421 |
| Cow position: | chrX:28606191-28605785 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 247 |
| Conread position: | 17-423 |
| Cow position: | chrX:14782447-14782031 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-423 |
| Cow position: | chrX:20999370-20998963 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 135 |
| Conread position: | 17-423 |
| Cow position: | chrX:29099317-29099730 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 117 |
| Conread position: | 17-423 |
| Cow position: | chrX:41847631-41847217 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 118 |
| Conread position: | 17-424 |
| Cow position: | chrX:2048010-2048426 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-424 |
| Cow position: | chrX:9899438-9899028 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 127 |
| Conread position: | 17-425 |
| Cow position: | chrX:3360720-3361136 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 24 |
| Conread position: | 17-425 |
| Cow position: | chrX:8640686-8641103 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 193 |
| Conread position: | 17-425 |
| Cow position: | chrX:9011229-9011642 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 17-425 |
| Cow position: | chrX:9169707-9169299 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 191 |
| Conread position: | 17-425 |
| Cow position: | chrX:11146436-11146018 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 17-425 |
| Cow position: | chrX:12359783-12360203 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 17-425 |
| Cow position: | chrX:15978053-15977638 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 59 |
| Conread position: | 17-425 |
| Cow position: | chrX:16325626-16325214 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 23 |
| Conread position: | 17-425 |
| Cow position: | chrX:16782184-16782595 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 21 |
| Conread position: | 17-425 |
| Cow position: | chrX:17054466-17054884 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chrX:21389476-21389893 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chrX:21414765-21415182 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chrX:21767698-21768119 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chrX:21818556-21818166 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 81 |
| Conread position: | 17-425 |
| Cow position: | chrX:22564786-22564372 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 252 |
| Conread position: | 17-425 |
| Cow position: | chrX:23986151-23986565 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 41 |
| Conread position: | 17-425 |
| Cow position: | chrX:26530871-26531288 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chrX:27754326-27754744 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 357 |
| Conread position: | 17-425 |
| Cow position: | chrX:27758607-27759022 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 302 |
| Conread position: | 17-425 |
| Cow position: | chrX:31495635-31496051 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 234 |
| Conread position: | 17-425 |
| Cow position: | chrX:38228417-38227996 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 11 |
| Conread position: | 17-425 |
| Cow position: | chrX:39556890-39556479 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 195 |
| Conread position: | 17-425 |
| Cow position: | chrX:39713449-39713866 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-425 |
| Cow position: | chrX:42732770-42733187 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 17-426 |
| Cow position: | chrX:7551903-7551486 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 393 |
| Conread position: | 17-426 |
| Cow position: | chrX:23572920-23572500 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 18-398 |
| Cow position: | chrX:4481881-4482244 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 22 |
| Conread position: | 19-414 |
| Cow position: | chrX:23022218-23022617 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 19-425 |
| Cow position: | chrX:18656905-18656490 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 20-399 |
| Cow position: | chrX:10413073-10412687 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 20-414 |
| Cow position: | chrX:24175048-24174647 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 25-364 |
| Cow position: | chrX:6656112-6655782 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 253 |
| Conread position: | 25-425 |
| Cow position: | chrX:28503242-28503651 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 44-398 |
| Cow position: | chrX:35023995-35024347 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 9 |
| Conread position: | 54-425 |
| Cow position: | chrX:12345831-12346211 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 65-425 |
| Cow position: | chrX:39185119-39185488 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 66-425 |
| Cow position: | chrX:25573300-25573659 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 256 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 124, 41 |
| Conread position: | 73-414 |
| Cow position: | chrX:29700987-29700648 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 68 |
| Conread position: | 77-274 |
| Cow position: | chrX:21750284-21750081 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 77-400 |
| Cow position: | chrX:2649392-2649060 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 248 |
| Conread position: | 107-424 |
| Cow position: | chrX:21626710-21626380 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 241 |
| Conread position: | 117-424 |
| Cow position: | chrX:12465036-12465346 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 117-424 |
| Cow position: | chrX:30135344-30135033 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 75, 207 |
| Conread position: | 123-395 |
| Cow position: | chrX:10301135-10301413 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 47 |
| Conread position: | 125-399 |
| Cow position: | chrX:37117915-37118200 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 126-425 |
| Cow position: | chrX:22125848-22125540 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 155 |
| Conread position: | 131-424 |
| Cow position: | chrX:38330396-38330696 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 60, 165 |
| Conread position: | 146-425 |
| Cow position: | chrX:19877845-19878127 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 58, 121 |
| Conread position: | 191-425 |
| Cow position: | chrX:2790318-2790552 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 531-793 |
| Cow position: | chrX:11819657-11819922 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 531-813 |
| Cow position: | chrX:38007692-38007400 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 533-652 |
| Cow position: | chrX:27445971-27446090 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 533-799 |
| Cow position: | chrX:10438641-10438375 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 538-813 |
| Cow position: | chrX:27590734-27590455 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 541-712 |
| Cow position: | chrX:40560240-40560068 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 541-813 |
| Cow position: | chrX:17265737-17265474 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 139, 66 |
| Conread position: | 548-698 |
| Cow position: | chrX:24280214-24280362 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 548-816 |
| Cow position: | chrX:33822408-33822679 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 64, 0 |
Show alignments to all cow chromosomes.