Cow genome map
| Conread name: | LyN1-MLN01H050003 |
| Conread position: | 2-405 |
| Cow position: | chr1:101623282-101622893 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 7-218 |
| Cow position: | chr1:78562181-78561977 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 7-255 |
| Cow position: | chr1:98426115-98425873 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 237, 30 |
| Conread position: | 7-284 |
| Cow position: | chr1:3330822-3330546 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 135, 30 |
| Conread position: | 7-405 |
| Cow position: | chr1:2758600-2758217 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 12-268 |
| Cow position: | chr1:29888652-29888901 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 36-256 |
| Cow position: | chr1:30069477-30069255 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 78 |
| Conread position: | 36-330 |
| Cow position: | chr1:13695345-13695058 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 36-405 |
| Cow position: | chr1:67603817-67604179 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 37-281 |
| Cow position: | chr1:36075014-36075253 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 108, 14 |
| Conread position: | 37-349 |
| Cow position: | chr1:14026096-14025789 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 73 |
| Conread position: | 38-249 |
| Cow position: | chr1:94534728-94534934 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 38-393 |
| Cow position: | chr1:49051470-49051827 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 72 |
| Conread position: | 45-404 |
| Cow position: | chr1:80172623-80172268 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 67 |
| Conread position: | 48-239 |
| Cow position: | chr1:72172640-72172453 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 48-393 |
| Cow position: | chr1:7452685-7452345 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 54 |
| Conread position: | 56-249 |
| Cow position: | chr1:90971023-90970834 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 188, 53 |
| Conread position: | 58-249 |
| Cow position: | chr1:33391086-33390899 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 186, 48 |
| Conread position: | 60-406 |
| Cow position: | chr1:35429814-35429489 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 61-207 |
| Cow position: | chr1:35000246-35000389 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 137, 48 |
| Conread position: | 62-239 |
| Cow position: | chr1:25518197-25518025 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 62-249 |
| Cow position: | chr1:58146277-58146462 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 62-406 |
| Cow position: | chr1:90041707-90042045 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 47 |
| Conread position: | 63-405 |
| Cow position: | chr1:95305251-95305587 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 64-330 |
| Cow position: | chr1:87115072-87114812 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 177, 45 |
| Conread position: | 66-261 |
| Cow position: | chr1:83643077-83643268 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 67-370 |
| Cow position: | chr1:71242338-71242630 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 42 |
| Conread position: | 68-359 |
| Cow position: | chr1:3327634-3327918 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 14 |
| Conread position: | 70-406 |
| Cow position: | chr1:102411119-102410791 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 40 |
| Conread position: | 71-408 |
| Cow position: | chr1:68929348-68929015 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 42 |
| Conread position: | 76-262 |
| Cow position: | chr1:92072453-92072635 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 97-407 |
| Cow position: | chr1:1923807-1924112 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 12 |
| Conread position: | 112-405 |
| Cow position: | chr1:98409538-98409249 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 133, 37 |
| Conread position: | 112-406 |
| Cow position: | chr1:27939846-27939557 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 113-405 |
| Cow position: | chr1:26910987-26910700 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 42 |
| Conread position: | 151-373 |
| Cow position: | chr1:16538325-16538542 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 93, 115 |
| Conread position: | 154-407 |
| Cow position: | chr1:80313828-80314076 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 55 |
| Conread position: | 180-405 |
| Cow position: | chr1:23298644-23298414 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 88 |
| Conread position: | 208-380 |
| Cow position: | chr1:81648812-81648978 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 208-406 |
| Cow position: | chr1:97473265-97473459 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 210-403 |
| Cow position: | chr1:16532352-16532543 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 221-405 |
| Cow position: | chr1:92388685-92388866 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 5 |
| Conread position: | 248-406 |
| Cow position: | chr1:97721697-97721854 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 249-404 |
| Cow position: | chr1:30069099-30068947 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 249-405 |
| Cow position: | chr1:98425675-98425521 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 250-405 |
| Cow position: | chr1:80196281-80196128 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 70 |
| Conread position: | 259-405 |
| Cow position: | chr1:32967401-32967546 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 270-403 |
| Cow position: | chr1:36076672-36076803 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 302-405 |
| Cow position: | chr1:29889384-29889485 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.