Cow genome map
| Conread name: | LyN1-MLN01H050003 |
| Conread position: | 7-405 |
| Cow position: | chr11:12337023-12336634 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 25 |
| Conread position: | 7-406 |
| Cow position: | chr11:63668447-63668832 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 13-269 |
| Cow position: | chr11:40496776-40496526 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 31-405 |
| Cow position: | chr11:62186766-62187133 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 32-409 |
| Cow position: | chr11:35101743-35102114 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 35-323 |
| Cow position: | chr11:2536509-2536795 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 78 |
| Conread position: | 36-405 |
| Cow position: | chr11:4660566-4660929 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 36-424 |
| Cow position: | chr11:45900068-45900448 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 276 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 137, 16 |
| Conread position: | 38-405 |
| Cow position: | chr11:21797569-21797207 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 46-406 |
| Cow position: | chr11:10135113-10135461 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 62 |
| Conread position: | 52-218 |
| Cow position: | chr11:19665507-19665346 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 58 |
| Conread position: | 54-405 |
| Cow position: | chr11:8100416-8100748 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 55 |
| Conread position: | 55-405 |
| Cow position: | chr11:37329412-37329755 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 56-243 |
| Cow position: | chr11:78471759-78471941 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 56-386 |
| Cow position: | chr11:2609983-2610286 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 56-393 |
| Cow position: | chr11:82532038-82532372 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 48 |
| Conread position: | 56-406 |
| Cow position: | chr11:41534903-41535237 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 58-239 |
| Cow position: | chr11:65720222-65720045 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 58-249 |
| Cow position: | chr11:61183140-61182953 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 186, 51 |
| Conread position: | 58-393 |
| Cow position: | chr11:49608196-49608500 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 58-405 |
| Cow position: | chr11:37710212-37709868 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 51 |
| Conread position: | 58-406 |
| Cow position: | chr11:19684708-19685046 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 25 |
| Conread position: | 59-257 |
| Cow position: | chr11:1045141-1045338 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 81, 50 |
| Conread position: | 59-416 |
| Cow position: | chr11:12369624-12369276 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 51 |
| Conread position: | 62-405 |
| Cow position: | chr11:4158698-4158371 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 62-405 |
| Cow position: | chr11:37331803-37331491 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 63-202 |
| Cow position: | chr11:81719332-81719468 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 63-394 |
| Cow position: | chr11:30129887-30130212 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 63-405 |
| Cow position: | chr11:66492001-66492330 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 64-249 |
| Cow position: | chr11:34679981-34679800 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 7, 47 |
| Conread position: | 65-249 |
| Cow position: | chr11:13056159-13056337 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 179, 44 |
| Conread position: | 65-402 |
| Cow position: | chr11:62649244-62648916 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 66-254 |
| Cow position: | chr11:23051283-23051469 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 178, 42 |
| Conread position: | 67-349 |
| Cow position: | chr11:38109104-38109374 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 72-249 |
| Cow position: | chr11:21793828-21793661 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 172, 37 |
| Conread position: | 72-255 |
| Cow position: | chr11:24964192-24964014 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 172, 37 |
| Conread position: | 74-351 |
| Cow position: | chr11:35943068-35942802 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 170, 35 |
| Conread position: | 75-405 |
| Cow position: | chr11:63674832-63675153 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 97-408 |
| Cow position: | chr11:36261212-36260906 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 111-406 |
| Cow position: | chr11:9348939-9348644 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 239, 23 |
| Conread position: | 112-405 |
| Cow position: | chr11:35367342-35367627 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 43 |
| Conread position: | 132-326 |
| Cow position: | chr11:41700464-41700267 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 17 |
| Conread position: | 208-396 |
| Cow position: | chr11:4921397-4921212 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 59 |
| Conread position: | 209-333 |
| Cow position: | chr11:20355355-20355479 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 35, 58 |
| Conread position: | 209-350 |
| Cow position: | chr11:64366129-64366266 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 248-393 |
| Cow position: | chr11:40496321-40496180 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 251-393 |
| Cow position: | chr11:85629161-85629024 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 251-404 |
| Cow position: | chr11:23493724-23493573 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 255-406 |
| Cow position: | chr11:16296082-16296230 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 263-405 |
| Cow position: | chr11:77736096-77735957 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 267-414 |
| Cow position: | chr11:24963760-24963615 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 271-411 |
| Cow position: | chr11:81719465-81719602 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.