Cow genome map
| Conread name: | LyN1-MLN01H050003 |
| Conread position: | 7-259 |
| Cow position: | chr3:23088123-23088366 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 7-343 |
| Cow position: | chr3:21714349-21714021 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 28 |
| Conread position: | 7-349 |
| Cow position: | chr3:25576698-25576365 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 30 |
| Conread position: | 7-405 |
| Cow position: | chr3:313254-312869 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 7-407 |
| Cow position: | chr3:24413617-24413236 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 7-407 |
| Cow position: | chr3:29307218-29306840 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 7-449 |
| Cow position: | chr3:30383553-30383115 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 19-339 |
| Cow position: | chr3:52399868-52399572 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 295, 13 |
| Conread position: | 21-316 |
| Cow position: | chr3:23429996-23430280 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 36-222 |
| Cow position: | chr3:7851686-7851865 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 36-362 |
| Cow position: | chr3:36005454-36005771 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 197, 15 |
| Conread position: | 36-393 |
| Cow position: | chr3:2672590-2672938 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 36-406 |
| Cow position: | chr3:5449205-5449544 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 209, 12 |
| Conread position: | 48-239 |
| Cow position: | chr3:41038351-41038163 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 48-249 |
| Cow position: | chr3:34210953-34211144 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 48-406 |
| Cow position: | chr3:7827598-7827246 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 54-414 |
| Cow position: | chr3:23185698-23186057 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 81 |
| Conread position: | 56-262 |
| Cow position: | chr3:42315872-42316070 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 142, 53 |
| Conread position: | 56-348 |
| Cow position: | chr3:74798456-74798753 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 48 |
| Conread position: | 56-383 |
| Cow position: | chr3:61964371-61964066 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 56-383 |
| Cow position: | chr3:67818096-67817781 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 53 |
| Conread position: | 56-406 |
| Cow position: | chr3:27559391-27559040 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 54 |
| Conread position: | 60-420 |
| Cow position: | chr3:7836857-7837207 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 62-236 |
| Cow position: | chr3:19200759-19200587 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 62-249 |
| Cow position: | chr3:61213145-61212962 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 182, 47 |
| Conread position: | 62-405 |
| Cow position: | chr3:5427467-5427152 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 63-199 |
| Cow position: | chr3:533660-533793 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 63-213 |
| Cow position: | chr3:34227961-34228108 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 64-365 |
| Cow position: | chr3:12769510-12769214 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 45 |
| Conread position: | 64-406 |
| Cow position: | chr3:5163953-5163621 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 65-254 |
| Cow position: | chr3:72580788-72580602 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 67-199 |
| Cow position: | chr3:523952-524081 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 69-342 |
| Cow position: | chr3:44956343-44956072 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 81, 40 |
| Conread position: | 70-219 |
| Cow position: | chr3:67460066-67460210 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 131, 36 |
| Conread position: | 70-257 |
| Cow position: | chr3:7775629-7775452 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 73-405 |
| Cow position: | chr3:7820858-7820539 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 36 |
| Conread position: | 76-401 |
| Cow position: | chr3:3400339-3400660 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 93-405 |
| Cow position: | chr3:5158152-5157842 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 62 |
| Conread position: | 112-249 |
| Cow position: | chr3:18061868-18061732 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 132, 39 |
| Conread position: | 112-406 |
| Cow position: | chr3:2657249-2656959 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 31 |
| Conread position: | 129-407 |
| Cow position: | chr3:25262320-25262046 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 208-406 |
| Cow position: | chr3:59026323-59026132 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 61 |
| Conread position: | 209-350 |
| Cow position: | chr3:7818388-7818247 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 60 |
| Conread position: | 214-393 |
| Cow position: | chr3:7838214-7838036 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 52 |
| Conread position: | 225-367 |
| Cow position: | chr3:23088475-23088616 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 225-405 |
| Cow position: | chr3:7853932-7854111 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 249-394 |
| Cow position: | chr3:10900167-10900305 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 266-405 |
| Cow position: | chr3:72580256-72580119 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 268-405 |
| Cow position: | chr3:7774263-7774132 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 271-405 |
| Cow position: | chr3:67460480-67460612 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.