Cow genome map
| Conread name: | LyN1-MLN01H050003 |
| Conread position: | 1-300 |
| Cow position: | chr5:16368378-16368073 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 59, 37 |
| Conread position: | 6-406 |
| Cow position: | chr5:12550285-12550678 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 103 |
| Conread position: | 7-213 |
| Cow position: | chr5:62033023-62032822 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 7-403 |
| Cow position: | chr5:43094664-43095053 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 30 |
| Conread position: | 7-405 |
| Cow position: | chr5:10037874-10038267 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 28 |
| Conread position: | 7-406 |
| Cow position: | chr5:5918847-5918463 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 30 |
| Conread position: | 12-404 |
| Cow position: | chr5:47961657-47961281 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 26 |
| Conread position: | 13-412 |
| Cow position: | chr5:34502799-34503182 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 19 |
| Conread position: | 29-407 |
| Cow position: | chr5:14053110-14053474 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 6 |
| Conread position: | 32-405 |
| Cow position: | chr5:68086845-68087210 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 36-242 |
| Cow position: | chr5:47438770-47438567 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 36-349 |
| Cow position: | chr5:11670993-11671289 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 15 |
| Conread position: | 36-380 |
| Cow position: | chr5:52404105-52404454 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 36-406 |
| Cow position: | chr5:2216784-2217141 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 36-406 |
| Cow position: | chr5:15754390-15754752 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 38-249 |
| Cow position: | chr5:55193831-55194036 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 206, 16 |
| Conread position: | 56-360 |
| Cow position: | chr5:38590579-38590288 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 53 |
| Conread position: | 58-216 |
| Cow position: | chr5:34964363-34964516 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 58-406 |
| Cow position: | chr5:45694693-45695012 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 186, 51 |
| Conread position: | 62-195 |
| Cow position: | chr5:12276358-12276231 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 62-243 |
| Cow position: | chr5:52001712-52001887 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 62-392 |
| Cow position: | chr5:75451050-75451376 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 62-405 |
| Cow position: | chr5:44648442-44648107 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 48 |
| Conread position: | 65-405 |
| Cow position: | chr5:65206508-65206837 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 48 |
| Conread position: | 66-406 |
| Cow position: | chr5:69711260-69711594 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 88-340 |
| Cow position: | chr5:44113710-44113469 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 156, 21 |
| Conread position: | 93-268 |
| Cow position: | chr5:59636340-59636511 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 93-318 |
| Cow position: | chr5:60215990-60216209 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 112-249 |
| Cow position: | chr5:35332915-35333051 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 132, 50 |
| Conread position: | 112-342 |
| Cow position: | chr5:58350257-58350487 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 70, 22 |
| Conread position: | 112-391 |
| Cow position: | chr5:7797103-7796832 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 116-380 |
| Cow position: | chr5:56810907-56810639 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 101, 39 |
| Conread position: | 208-405 |
| Cow position: | chr5:35334504-35334695 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 159 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 214-406 |
| Cow position: | chr5:2023703-2023512 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 31, 52 |
| Conread position: | 243-405 |
| Cow position: | chr5:69732139-69731982 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 249-405 |
| Cow position: | chr5:69126766-69126920 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 259-401 |
| Cow position: | chr5:33924406-33924261 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 6 |
| Conread position: | 279-411 |
| Cow position: | chr5:16368071-16367942 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 289-406 |
| Cow position: | chr5:31491250-31491133 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 302-406 |
| Cow position: | chr5:40733533-40733632 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.