Cow genome map
| Conread name: | LyN2-AR048H04LN05LH02S |
| Conread position: | 2-87 |
| Cow position: | chr1:44011824-44011909 (view UCSC Genome Browser custom track) |
| Alignm length: | 86 |
| Alignm identity: | 78 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-104 |
| Cow position: | chr1:62713942-62713838 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 58 |
| Conread position: | 2-127 |
| Cow position: | chr1:25184122-25184253 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 2-128 |
| Cow position: | chr1:76096446-76096576 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 2-129 |
| Cow position: | chr1:5347070-5347203 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 2-134 |
| Cow position: | chr1:35843919-35843777 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 2-155 |
| Cow position: | chr1:69004405-69004560 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 137 |
| Conread position: | 2-159 |
| Cow position: | chr1:5278403-5278239 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 2-159 |
| Cow position: | chr1:6130725-6130560 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 23, 106 |
| Conread position: | 2-159 |
| Cow position: | chr1:61737107-61737276 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 2-160 |
| Cow position: | chr1:20581951-20582122 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 2-160 |
| Cow position: | chr1:31871436-31871609 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 74 |
| Conread position: | 2-160 |
| Cow position: | chr1:70236254-70236087 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 2-160 |
| Cow position: | chr1:71136160-71136331 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 2-160 |
| Cow position: | chr1:76170213-76170375 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 88, 135 |
| Conread position: | 2-160 |
| Cow position: | chr1:80897887-80897725 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 88, 33 |
| Conread position: | 2-160 |
| Cow position: | chr1:85411588-85411751 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 64, 131 |
| Conread position: | 2-161 |
| Cow position: | chr1:75183740-75183569 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 2-173 |
| Cow position: | chr1:4788545-4788727 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 85, 170 |
| Conread position: | 2-179 |
| Cow position: | chr1:51904326-51904144 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 80, 165 |
| Conread position: | 2-187 |
| Cow position: | chr1:75998460-75998264 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 130 |
| Conread position: | 2-192 |
| Cow position: | chr1:45479580-45479381 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 83, 174 |
| Conread position: | 2-193 |
| Cow position: | chr1:80384756-80384549 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 3-126 |
| Cow position: | chr1:3657353-3657225 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 3-153 |
| Cow position: | chr1:47117268-47117109 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 3-186 |
| Cow position: | chr1:46205823-46206013 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 84, 172 |
| Conread position: | 3-186 |
| Cow position: | chr1:89548202-89548392 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 84, 12 |
| Conread position: | 4-127 |
| Cow position: | chr1:8192720-8192593 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 4-128 |
| Cow position: | chr1:80973594-80973465 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 4-134 |
| Cow position: | chr1:97603624-97603490 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 5 |
| Conread position: | 4-197 |
| Cow position: | chr1:50634247-50634042 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 5-154 |
| Cow position: | chr1:102466315-102466474 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 5-160 |
| Cow position: | chr1:5102478-5102313 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 5-160 |
| Cow position: | chr1:45310261-45310094 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 6-160 |
| Cow position: | chr1:36614074-36613911 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 84, 126 |
| Conread position: | 6-160 |
| Cow position: | chr1:89007735-89007573 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 83, 30 |
| Conread position: | 9-193 |
| Cow position: | chr1:7657295-7657104 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 15-134 |
| Cow position: | chr1:13195406-13195284 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 15-154 |
| Cow position: | chr1:56643580-56643429 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 25-197 |
| Cow position: | chr1:44746897-44747080 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.