Cow genome map

Conread name: LyN2-AR060E02LN05AFE02F

Conread position: 1-189
Cow position: chr11:84531607-84531417 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 134
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 78, 139

Conread position: 1-291
Cow position: chr11:37160467-37160761 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 217
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 75, 183

Conread position: 1-298
Cow position: chr11:20491250-20491553 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 263

Conread position: 1-303
Cow position: chr11:42519421-42519722 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 76

Conread position: 5-396
Cow position: chr11:78990292-78989909 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 22

Conread position: 7-293
Cow position: chr11:80012149-80011869 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 70

Conread position: 7-297
Cow position: chr11:1668357-1668656 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 279

Conread position: 13-303
Cow position: chr11:8828940-8828644 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 65, 224

Conread position: 17-309
Cow position: chr11:46580059-46580347 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 199
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 61, 141

Conread position: 19-262
Cow position: chr11:48474403-48474648 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 59, 93

Conread position: 21-293
Cow position: chr11:21844436-21844158 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 189
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 127, 56

Conread position: 25-288
Cow position: chr11:67940407-67940666 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 51

Conread position: 27-283
Cow position: chr11:53142509-53142253 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 51, 16

Conread position: 28-273
Cow position: chr11:8148180-8147943 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 168
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 163, 49

Conread position: 29-215
Cow position: chr11:48428799-48428978 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 81

Conread position: 29-280
Cow position: chr11:64845349-64845611 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 159

Conread position: 29-280
Cow position: chr11:73474069-73473807 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 47, 63

Conread position: 29-305
Cow position: chr11:14308343-14308625 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 47, 170

Conread position: 31-303
Cow position: chr11:7334015-7333736 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 32-251
Cow position: chr11:23128828-23128609 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 157, 35

Conread position: 33-199
Cow position: chr11:18371731-18371565 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 53, 66

Conread position: 33-297
Cow position: chr11:31885227-31885498 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 152
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 45, 13

Conread position: 35-297
Cow position: chr11:66265317-66265580 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 180
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 41, 62

Conread position: 37-280
Cow position: chr11:68910134-68909889 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 41, 12

Conread position: 37-303
Cow position: chr11:27681212-27681485 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 187
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 111, 168

Conread position: 38-196
Cow position: chr11:54134532-54134371 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 38-267
Cow position: chr11:8339691-8339458 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 40, 166

Conread position: 38-300
Cow position: chr11:56797025-56796759 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 179
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 39, 82

Conread position: 39-264
Cow position: chr11:8988515-8988280 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 160
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 39-273
Cow position: chr11:50111906-50112143 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 83

Conread position: 39-284
Cow position: chr11:65694122-65693865 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 38, 143

Conread position: 39-296
Cow position: chr11:65970169-65970436 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 39, 238

Conread position: 39-315
Cow position: chr11:5032062-5031779 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 37, 169

Conread position: 40-303
Cow position: chr11:28692036-28691772 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 96, 40

Conread position: 40-396
Cow position: chr11:34121472-34121837 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 21

Conread position: 41-303
Cow position: chr11:42232332-42232592 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 186
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 69

Conread position: 43-274
Cow position: chr11:57047244-57047014 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 33, 58

Conread position: 44-187
Cow position: chr11:83043641-83043496 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 44-287
Cow position: chr11:25332009-25331769 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 64

Conread position: 44-303
Cow position: chr11:50951270-50951541 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 196
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 34, 0

Conread position: 45-266
Cow position: chr11:39057359-39057578 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 156

Conread position: 45-395
Cow position: chr11:46398848-46399199 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 126

Conread position: 46-269
Cow position: chr11:77207770-77207998 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 47-257
Cow position: chr11:81174613-81174830 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 29, 0

Conread position: 47-264
Cow position: chr11:47169279-47169058 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 31, 68

Conread position: 47-275
Cow position: chr11:13039407-13039185 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 166, 31

Conread position: 47-279
Cow position: chr11:63157192-63156947 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 47-293
Cow position: chr11:40396050-40396296 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 151, 115

Conread position: 47-303
Cow position: chr11:24967188-24967437 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 109, 20

Conread position: 47-305
Cow position: chr11:10076497-10076754 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 29, 70

Conread position: 47-305
Cow position: chr11:51044214-51043942 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 184
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 31, 163

Conread position: 47-404
Cow position: chr11:46247168-46247536 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 251
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 31, 138

Conread position: 48-269
Cow position: chr11:59872650-59872883 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 162

Conread position: 48-277
Cow position: chr11:68422804-68423032 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 30, 90

Conread position: 48-303
Cow position: chr11:27386616-27386355 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 172
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 110

Conread position: 51-194
Cow position: chr11:30354794-30354944 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 51-227
Cow position: chr11:51144444-51144625 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 27, 154

Conread position: 51-227
Cow position: chr11:84774844-84775016 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 51-257
Cow position: chr11:46473959-46473741 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 166
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 24, 149

Conread position: 51-264
Cow position: chr11:73924832-73924614 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 28, 153

Conread position: 51-267
Cow position: chr11:62155357-62155577 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 108, 37

Conread position: 51-269
Cow position: chr11:75355336-75355560 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 140

Conread position: 51-279
Cow position: chr11:70399587-70399823 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 106, 0

Conread position: 51-296
Cow position: chr11:12175101-12174855 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 169
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 20, 66

Conread position: 51-303
Cow position: chr11:11752792-11752533 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 25, 225

Conread position: 51-303
Cow position: chr11:13043410-13043162 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 166
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 143, 16

Conread position: 51-303
Cow position: chr11:16000655-16000913 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 13

Conread position: 51-303
Cow position: chr11:62738942-62739205 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 191
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 27, 191

Conread position: 51-303
Cow position: chr11:67745054-67745308 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 27, 170

Conread position: 51-396
Cow position: chr11:15125253-15124908 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 183

Conread position: 53-301
Cow position: chr11:43644370-43644118 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 86

Conread position: 54-294
Cow position: chr11:8232834-8232592 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 80

Conread position: 54-306
Cow position: chr11:30952789-30952526 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 24, 174

Conread position: 55-298
Cow position: chr11:18145074-18144836 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 173
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 23, 41

Conread position: 59-291
Cow position: chr11:11460232-11460468 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 19, 93

Conread position: 60-303
Cow position: chr11:24584915-24585165 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 168
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 66-303
Cow position: chr11:39808732-39808977 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 76, 163

Conread position: 66-303
Cow position: chr11:45889695-45889947 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 218

Conread position: 68-294
Cow position: chr11:43526377-43526151 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 53, 105

Conread position: 69-269
Cow position: chr11:65956021-65955808 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 72-284
Cow position: chr11:64904745-64904963 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 67, 203

Conread position: 77-303
Cow position: chr11:67236162-67236386 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 66, 120

Conread position: 81-290
Cow position: chr11:4610076-4609866 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 59, 183

Conread position: 89-308
Cow position: chr11:35668952-35668722 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 59, 0

Conread position: 105-297
Cow position: chr11:876882-877075 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 35, 160

Conread position: 127-308
Cow position: chr11:55821901-55821715 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 169

Conread position: 142-294
Cow position: chr11:78543757-78543911 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 132

Conread position: 149-303
Cow position: chr11:9874149-9874304 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 104

Conread position: 184-396
Cow position: chr11:38871055-38871268 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 140

Conread position: 193-396
Cow position: chr11:68245703-68245501 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 112

Conread position: 208-397
Cow position: chr11:32193528-32193344 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 66, 17

Show alignments to all cow chromosomes.