Cow genome map

Conread name: LyN2-AR060E02LN05AFE02F

Conread position: 1-273
Cow position: chr16:36911336-36911071 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 79, 136

Conread position: 15-303
Cow position: chr16:11153478-11153185 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 209
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 63, 19

Conread position: 18-271
Cow position: chr16:50014242-50014500 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 195
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 42, 89

Conread position: 19-269
Cow position: chr16:26373239-26372979 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 109

Conread position: 19-303
Cow position: chr16:4979529-4979804 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 58

Conread position: 21-293
Cow position: chr16:13601350-13601086 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 189
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 144, 42

Conread position: 23-302
Cow position: chr16:3628535-3628815 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 53, 63

Conread position: 25-305
Cow position: chr16:55586882-55586600 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 50, 249

Conread position: 27-262
Cow position: chr16:40731947-40732180 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 130, 33

Conread position: 27-306
Cow position: chr16:18426906-18427193 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 56, 0

Conread position: 29-268
Cow position: chr16:20025167-20025415 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 164
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 112

Conread position: 31-200
Cow position: chr16:52889685-52889510 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 0

Conread position: 31-268
Cow position: chr16:7665357-7665604 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 164
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 45, 239

Conread position: 32-275
Cow position: chr16:16545797-16546048 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 185
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 45, 214

Conread position: 36-259
Cow position: chr16:9845983-9845748 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 36-271
Cow position: chr16:7639725-7639962 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 41, 157

Conread position: 36-273
Cow position: chr16:52218819-52219055 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 42, 125

Conread position: 37-268
Cow position: chr16:7427135-7426890 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 183
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 42, 0

Conread position: 38-279
Cow position: chr16:3633847-3634090 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 161
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 172

Conread position: 38-280
Cow position: chr16:4499173-4499415 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 39

Conread position: 39-257
Cow position: chr16:7542024-7542244 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 151
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 148, 102

Conread position: 39-257
Cow position: chr16:51598869-51598648 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 37, 0

Conread position: 39-263
Cow position: chr16:28833575-28833799 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 152
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 41, 80

Conread position: 39-264
Cow position: chr16:19757053-19756831 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 37, 58

Conread position: 39-271
Cow position: chr16:3918262-3918503 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 38, 103

Conread position: 39-271
Cow position: chr16:42079106-42078871 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 161
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 70, 42

Conread position: 39-280
Cow position: chr16:15824705-15824464 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 161
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 148, 27

Conread position: 39-281
Cow position: chr16:28112183-28111937 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 116, 36

Conread position: 39-284
Cow position: chr16:34210680-34210423 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 39, 0

Conread position: 39-293
Cow position: chr16:5243696-5243963 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 39, 0

Conread position: 39-303
Cow position: chr16:31419181-31419449 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 197
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 37, 23

Conread position: 40-264
Cow position: chr16:28816367-28816130 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 41, 0

Conread position: 41-302
Cow position: chr16:27004935-27005204 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 200
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 37, 256

Conread position: 42-303
Cow position: chr16:46253953-46253684 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 67

Conread position: 43-194
Cow position: chr16:44248040-44247884 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 43-267
Cow position: chr16:33751935-33752164 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 151
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 35, 122

Conread position: 43-280
Cow position: chr16:4144803-4145045 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 160
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 116, 0

Conread position: 43-294
Cow position: chr16:23066405-23066656 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 173
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 34, 153

Conread position: 45-268
Cow position: chr16:49169643-49169416 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 154
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 45-285
Cow position: chr16:17745573-17745820 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 168
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 32, 0

Conread position: 45-293
Cow position: chr16:2308423-2308681 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 39, 0

Conread position: 45-293
Cow position: chr16:27013639-27013888 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 27, 131

Conread position: 46-281
Cow position: chr16:28267270-28267031 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 161
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 111, 31

Conread position: 47-280
Cow position: chr16:4910790-4910546 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 47-289
Cow position: chr16:23990746-23990492 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 31, 0

Conread position: 47-294
Cow position: chr16:53267470-53267719 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 29, 100

Conread position: 51-269
Cow position: chr16:39164991-39165211 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 25, 83

Conread position: 51-280
Cow position: chr16:56534191-56534426 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 97, 27

Conread position: 51-294
Cow position: chr16:17867730-17867475 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 250

Conread position: 53-294
Cow position: chr16:51070182-51069923 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 81

Conread position: 53-303
Cow position: chr16:42257202-42257454 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 79, 32

Conread position: 54-276
Cow position: chr16:19976713-19976952 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 55-302
Cow position: chr16:11008093-11008346 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 21, 11

Conread position: 55-305
Cow position: chr16:48492935-48493184 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 165
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 135, 22

Conread position: 66-398
Cow position: chr16:4762898-4763229 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 77

Conread position: 68-270
Cow position: chr16:49230006-49229802 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 95

Conread position: 68-278
Cow position: chr16:54515492-54515704 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 123, 73

Conread position: 69-303
Cow position: chr16:19003306-19003085 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 96, 81

Conread position: 70-303
Cow position: chr16:41608374-41608617 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 70-404
Cow position: chr16:4875765-4876097 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 8

Conread position: 82-303
Cow position: chr16:26156357-26156134 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 69, 101

Conread position: 104-261
Cow position: chr16:18949402-18949572 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 111-308
Cow position: chr16:46628029-46627828 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 91

Conread position: 120-393
Cow position: chr16:25803589-25803317 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 28, 108

Conread position: 133-303
Cow position: chr16:13792827-13792656 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 28, 59

Conread position: 142-303
Cow position: chr16:22872527-22872365 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 71, 49

Conread position: 150-297
Cow position: chr16:52222480-52222329 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 183-357
Cow position: chr16:28829962-28829787 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 15, 99

Conread position: 230-389
Cow position: chr16:9793520-9793676 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Show alignments to all cow chromosomes.