Cow genome map
| Conread name: | LyN2-AR060E02LN05AFE02F |
| Conread position: | 18-189 |
| Cow position: | chr17:7423688-7423513 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 19-294 |
| Cow position: | chr17:28359607-28359876 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 58 |
| Conread position: | 21-252 |
| Cow position: | chr17:30999532-30999760 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 21-303 |
| Cow position: | chr17:13989418-13989130 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 57, 179 |
| Conread position: | 21-330 |
| Cow position: | chr17:3270083-3270375 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 136, 39 |
| Conread position: | 25-253 |
| Cow position: | chr17:36817702-36817936 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 25-303 |
| Cow position: | chr17:21313041-21312767 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 27-259 |
| Cow position: | chr17:17452840-17452604 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 69 |
| Conread position: | 27-264 |
| Cow position: | chr17:8690678-8690436 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 31-262 |
| Cow position: | chr17:38276458-38276691 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 31-269 |
| Cow position: | chr17:5246666-5246902 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 125, 36 |
| Conread position: | 33-288 |
| Cow position: | chr17:27819070-27819333 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 35-270 |
| Cow position: | chr17:15363787-15363550 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 123, 32 |
| Conread position: | 35-283 |
| Cow position: | chr17:22232496-22232244 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 213 |
| Conread position: | 35-303 |
| Cow position: | chr17:25707725-25708002 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 43, 204 |
| Conread position: | 35-307 |
| Cow position: | chr17:2079531-2079810 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 36-306 |
| Cow position: | chr17:18815002-18815264 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 37-270 |
| Cow position: | chr17:12216305-12216063 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 233 |
| Conread position: | 37-270 |
| Cow position: | chr17:43717534-43717307 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 114, 30 |
| Conread position: | 37-292 |
| Cow position: | chr17:20815145-20815404 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 170 |
| Conread position: | 37-305 |
| Cow position: | chr17:28539808-28540074 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 80 |
| Conread position: | 38-197 |
| Cow position: | chr17:8644810-8644977 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 80 |
| Conread position: | 38-269 |
| Cow position: | chr17:3781818-3782054 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 39-258 |
| Cow position: | chr17:30529762-30529542 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 39-279 |
| Cow position: | chr17:25145536-25145300 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 32, 124 |
| Conread position: | 39-303 |
| Cow position: | chr17:23803242-23803502 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 39, 63 |
| Conread position: | 39-303 |
| Cow position: | chr17:33999270-33999009 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 41, 164 |
| Conread position: | 40-264 |
| Cow position: | chr17:1061287-1061054 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 40-303 |
| Cow position: | chr17:20993265-20992995 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 41-301 |
| Cow position: | chr17:3042255-3042517 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 37, 116 |
| Conread position: | 42-303 |
| Cow position: | chr17:10634279-10634016 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 183 |
| Conread position: | 42-303 |
| Cow position: | chr17:36533151-36533413 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 158 |
| Conread position: | 43-191 |
| Cow position: | chr17:12054498-12054649 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 43-290 |
| Cow position: | chr17:3466614-3466859 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 43-294 |
| Cow position: | chr17:37415122-37414860 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 43-303 |
| Cow position: | chr17:10308234-10307986 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 37, 72 |
| Conread position: | 45-268 |
| Cow position: | chr17:22563967-22564191 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 110, 21 |
| Conread position: | 45-275 |
| Cow position: | chr17:20126401-20126630 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 93, 30 |
| Conread position: | 45-291 |
| Cow position: | chr17:25590456-25590203 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 31, 234 |
| Conread position: | 45-303 |
| Cow position: | chr17:32457800-32457523 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 45-306 |
| Cow position: | chr17:23880048-23879779 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 33, 179 |
| Conread position: | 46-197 |
| Cow position: | chr17:27504907-27505062 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 46-295 |
| Cow position: | chr17:25755565-25755831 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 47-257 |
| Cow position: | chr17:5380748-5380969 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 47-258 |
| Cow position: | chr17:30665056-30665271 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 47-259 |
| Cow position: | chr17:16895512-16895304 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 31, 73 |
| Conread position: | 47-261 |
| Cow position: | chr17:21419214-21419439 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 47-264 |
| Cow position: | chr17:26084817-26085040 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 47-270 |
| Cow position: | chr17:11102012-11101789 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 31, 114 |
| Conread position: | 47-280 |
| Cow position: | chr17:5041894-5041660 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 47-294 |
| Cow position: | chr17:25181367-25181110 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 242 |
| Conread position: | 47-295 |
| Cow position: | chr17:27697910-27697666 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 29, 68 |
| Conread position: | 47-303 |
| Cow position: | chr17:1526571-1526309 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 111, 31 |
| Conread position: | 47-391 |
| Cow position: | chr17:9293530-9293880 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 260 |
| Conread position: | 48-263 |
| Cow position: | chr17:16307163-16307383 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 48-268 |
| Cow position: | chr17:41290234-41290013 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 76 |
| Conread position: | 48-305 |
| Cow position: | chr17:33926338-33926079 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 95, 27 |
| Conread position: | 51-270 |
| Cow position: | chr17:1653902-1653681 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 51-280 |
| Cow position: | chr17:23245998-23246227 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 153 |
| Conread position: | 51-303 |
| Cow position: | chr17:11171582-11171835 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 27, 146 |
| Conread position: | 51-352 |
| Cow position: | chr17:8861395-8861088 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 106, 37 |
| Conread position: | 51-403 |
| Cow position: | chr17:18494729-18494383 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 53-264 |
| Cow position: | chr17:25740738-25740958 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 53-271 |
| Cow position: | chr17:30236016-30236220 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 53-296 |
| Cow position: | chr17:34628693-34628442 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 54-273 |
| Cow position: | chr17:7890390-7890158 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 54-302 |
| Cow position: | chr17:8279918-8279665 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 102, 246 |
| Conread position: | 56-268 |
| Cow position: | chr17:38646859-38647067 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 133, 20 |
| Conread position: | 58-268 |
| Cow position: | chr17:1035811-1035588 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 59-306 |
| Cow position: | chr17:42435836-42435597 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 62-293 |
| Cow position: | chr17:41892270-41892030 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 66-278 |
| Cow position: | chr17:18824590-18824812 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 68-264 |
| Cow position: | chr17:21697536-21697742 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 8, 161 |
| Conread position: | 70-267 |
| Cow position: | chr17:35311228-35311435 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 70-269 |
| Cow position: | chr17:35990903-35991108 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 89-301 |
| Cow position: | chr17:10271317-10271536 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 56, 181 |
| Conread position: | 89-302 |
| Cow position: | chr17:7594986-7595212 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 26 |
| Conread position: | 100-303 |
| Cow position: | chr17:37342649-37342444 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 126-337 |
| Cow position: | chr17:35212229-35212446 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 133-303 |
| Cow position: | chr17:7614508-7614337 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 175-294 |
| Cow position: | chr17:20608457-20608582 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 179-396 |
| Cow position: | chr17:16463096-16462880 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 122 |
Show alignments to all cow chromosomes.