Cow genome map
| Conread name: | LyN2-AR060E02LN05AFE02F |
| Conread position: | 11-303 |
| Cow position: | chr18:25970959-25970663 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 209 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 67, 199 |
| Conread position: | 13-280 |
| Cow position: | chr18:54463677-54463934 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 19-267 |
| Cow position: | chr18:33157502-33157751 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 59, 146 |
| Conread position: | 19-269 |
| Cow position: | chr18:25647568-25647317 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 193 |
| Conread position: | 22-299 |
| Cow position: | chr18:23424612-23424885 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 122 |
| Conread position: | 22-303 |
| Cow position: | chr18:10101176-10101461 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 54, 207 |
| Conread position: | 27-279 |
| Cow position: | chr18:43463718-43463462 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 44, 116 |
| Conread position: | 29-275 |
| Cow position: | chr18:42747287-42747535 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 87 |
| Conread position: | 30-271 |
| Cow position: | chr18:23808181-23807934 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 31-259 |
| Cow position: | chr18:4765573-4765351 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 31-303 |
| Cow position: | chr18:35797319-35797592 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 34-275 |
| Cow position: | chr18:4649039-4648800 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 36, 82 |
| Conread position: | 34-292 |
| Cow position: | chr18:4039875-4040134 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 35-191 |
| Cow position: | chr18:36769228-36769079 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 35-303 |
| Cow position: | chr18:51298178-51298451 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 108 |
| Conread position: | 37-282 |
| Cow position: | chr18:5570858-5571111 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 111, 29 |
| Conread position: | 38-262 |
| Cow position: | chr18:17324410-17324646 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 38-293 |
| Cow position: | chr18:14048413-14048667 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 78 |
| Conread position: | 39-264 |
| Cow position: | chr18:24342326-24342549 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 44, 108 |
| Conread position: | 39-296 |
| Cow position: | chr18:16842364-16842098 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 40-264 |
| Cow position: | chr18:8105241-8105013 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 41-256 |
| Cow position: | chr18:28924129-28923914 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 41-303 |
| Cow position: | chr18:34325255-34324982 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 42-287 |
| Cow position: | chr18:55789288-55789040 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 36, 195 |
| Conread position: | 43-303 |
| Cow position: | chr18:9806115-9806389 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 44-197 |
| Cow position: | chr18:26391393-26391550 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 45-245 |
| Cow position: | chr18:14480184-14480381 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 111, 22 |
| Conread position: | 45-303 |
| Cow position: | chr18:50993563-50993301 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 182 |
| Conread position: | 46-307 |
| Cow position: | chr18:18919245-18918986 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 40, 75 |
| Conread position: | 46-341 |
| Cow position: | chr18:26335108-26334803 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 182 |
| Conread position: | 47-294 |
| Cow position: | chr18:51412083-51412330 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 47-303 |
| Cow position: | chr18:19387289-19387547 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 31, 151 |
| Conread position: | 47-305 |
| Cow position: | chr18:4666502-4666239 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 48-303 |
| Cow position: | chr18:23476960-23476719 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 51-281 |
| Cow position: | chr18:10508447-10508228 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 51-303 |
| Cow position: | chr18:26535803-26535539 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 70 |
| Conread position: | 51-303 |
| Cow position: | chr18:38344517-38344777 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 97, 25 |
| Conread position: | 54-291 |
| Cow position: | chr18:23652897-23652664 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 102, 139 |
| Conread position: | 56-277 |
| Cow position: | chr18:17334698-17334467 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 58-400 |
| Cow position: | chr18:39185330-39185662 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 60-303 |
| Cow position: | chr18:16726368-16726619 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 61-303 |
| Cow position: | chr18:32773602-32773847 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 70-268 |
| Cow position: | chr18:33793442-33793639 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 130, 71 |
| Conread position: | 70-277 |
| Cow position: | chr18:29796691-29796480 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 74-293 |
| Cow position: | chr18:23360367-23360589 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 42, 196 |
| Conread position: | 77-307 |
| Cow position: | chr18:22411876-22411639 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 81-303 |
| Cow position: | chr18:19363677-19363908 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 74, 20 |
| Conread position: | 98-307 |
| Cow position: | chr18:24856083-24855871 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 112 |
| Conread position: | 109-303 |
| Cow position: | chr18:36123306-36123511 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 142-375 |
| Cow position: | chr18:35749169-35748943 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 53, 78 |
Show alignments to all cow chromosomes.