Cow genome map
| Conread name: | LyN2-AR060E02LN05AFE02F |
| Conread position: | 1-286 |
| Cow position: | chr21:35996929-35997224 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 7-290 |
| Cow position: | chr21:28944599-28944311 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 254 |
| Conread position: | 17-197 |
| Cow position: | chr21:13892056-13892230 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 174, 23 |
| Conread position: | 19-197 |
| Cow position: | chr21:14464354-14464538 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 21-283 |
| Cow position: | chr21:24758848-24759106 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 155 |
| Conread position: | 23-264 |
| Cow position: | chr21:29248063-29247833 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 128 |
| Conread position: | 23-279 |
| Cow position: | chr21:3381300-3381040 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 63, 134 |
| Conread position: | 25-396 |
| Cow position: | chr21:7156534-7156916 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 277 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 29-188 |
| Cow position: | chr21:5418647-5418811 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 29-269 |
| Cow position: | chr21:30607298-30607056 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 33-303 |
| Cow position: | chr21:24864945-24865226 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 7, 172 |
| Conread position: | 34-269 |
| Cow position: | chr21:23785824-23786063 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 36-275 |
| Cow position: | chr21:47764318-47764077 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 128 |
| Conread position: | 37-264 |
| Cow position: | chr21:42500828-42501066 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 39-257 |
| Cow position: | chr21:22860799-22861020 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 39-268 |
| Cow position: | chr21:48484644-48484415 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 154, 38 |
| Conread position: | 39-302 |
| Cow position: | chr21:35061885-35062151 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 164 |
| Conread position: | 39-303 |
| Cow position: | chr21:39401397-39401660 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 121, 38 |
| Conread position: | 40-275 |
| Cow position: | chr21:34391172-34390935 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 40, 116 |
| Conread position: | 41-282 |
| Cow position: | chr21:23500022-23499785 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 115, 126 |
| Conread position: | 41-292 |
| Cow position: | chr21:17674437-17674176 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 65 |
| Conread position: | 42-281 |
| Cow position: | chr21:46242439-46242194 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 77 |
| Conread position: | 42-306 |
| Cow position: | chr21:47823471-47823205 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 43-264 |
| Cow position: | chr21:3236333-3236551 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 149, 74 |
| Conread position: | 43-271 |
| Cow position: | chr21:30849138-30848913 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 43-279 |
| Cow position: | chr21:24887810-24888051 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 163 |
| Conread position: | 43-280 |
| Cow position: | chr21:12616940-12617181 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 159 |
| Conread position: | 43-303 |
| Cow position: | chr21:44754979-44754713 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 28, 167 |
| Conread position: | 45-269 |
| Cow position: | chr21:23478916-23478684 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 33, 46 |
| Conread position: | 45-303 |
| Cow position: | chr21:28734109-28733847 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 33, 152 |
| Conread position: | 47-273 |
| Cow position: | chr21:12973448-12973210 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 31, 232 |
| Conread position: | 47-283 |
| Cow position: | chr21:44093584-44093829 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 31, 84 |
| Conread position: | 47-303 |
| Cow position: | chr21:9353245-9353512 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 47-303 |
| Cow position: | chr21:28998101-28997833 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 236 |
| Conread position: | 48-253 |
| Cow position: | chr21:24714459-24714674 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 48-270 |
| Cow position: | chr21:28993820-28993587 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 48-280 |
| Cow position: | chr21:33997416-33997185 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 95 |
| Conread position: | 48-294 |
| Cow position: | chr21:24698295-24698537 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 147 |
| Conread position: | 48-303 |
| Cow position: | chr21:15742285-15742024 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 74 |
| Conread position: | 48-307 |
| Cow position: | chr21:34053381-34053124 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 65 |
| Conread position: | 48-307 |
| Cow position: | chr21:42459741-42459467 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 51-302 |
| Cow position: | chr21:20426340-20426594 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 134 |
| Conread position: | 51-303 |
| Cow position: | chr21:25286318-25286582 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 221 |
| Conread position: | 51-303 |
| Cow position: | chr21:42053456-42053199 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 27, 105 |
| Conread position: | 51-303 |
| Cow position: | chr21:48291223-48290987 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 51-398 |
| Cow position: | chr21:8289832-8289471 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 192 |
| Conread position: | 53-303 |
| Cow position: | chr21:34565402-34565144 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 146 |
| Conread position: | 53-394 |
| Cow position: | chr21:36819402-36819039 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 27, 56 |
| Conread position: | 54-281 |
| Cow position: | chr21:30990456-30990234 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 80 |
| Conread position: | 61-306 |
| Cow position: | chr21:12087413-12087657 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 94, 18 |
| Conread position: | 67-294 |
| Cow position: | chr21:25800235-25800456 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 124, 14 |
| Conread position: | 70-264 |
| Cow position: | chr21:47861024-47861223 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 185 |
| Conread position: | 92-303 |
| Cow position: | chr21:6316052-6316283 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 95-257 |
| Cow position: | chr21:6058785-6058620 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 68, 127 |
| Conread position: | 98-294 |
| Cow position: | chr21:41583127-41583331 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 31, 170 |
| Conread position: | 177-400 |
| Cow position: | chr21:24703616-24703835 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 18, 41 |
Show alignments to all cow chromosomes.