Cow genome map
| Conread name: | LyN2-AR060E02LN05AFE02F |
| Conread position: | 13-283 |
| Cow position: | chr24:1438586-1438313 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 111 |
| Conread position: | 15-303 |
| Cow position: | chr24:6508078-6507789 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 209 |
| Conread position: | 15-303 |
| Cow position: | chr24:39350523-39350238 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 53, 102 |
| Conread position: | 21-257 |
| Cow position: | chr24:30545164-30544926 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 21-307 |
| Cow position: | chr24:32759079-32758775 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 27-303 |
| Cow position: | chr24:39258861-39259138 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 169 |
| Conread position: | 33-293 |
| Cow position: | chr24:30860341-30860604 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 34-303 |
| Cow position: | chr24:23685357-23685089 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 40, 151 |
| Conread position: | 35-227 |
| Cow position: | chr24:27096391-27096585 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 37-264 |
| Cow position: | chr24:20862249-20862017 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 38-246 |
| Cow position: | chr24:16162506-16162713 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 118, 39 |
| Conread position: | 38-270 |
| Cow position: | chr24:17763543-17763323 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 40, 99 |
| Conread position: | 38-281 |
| Cow position: | chr24:25677742-25677996 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 41, 82 |
| Conread position: | 38-301 |
| Cow position: | chr24:27633121-27633385 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 40, 141 |
| Conread position: | 39-197 |
| Cow position: | chr24:23616404-23616563 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 39-268 |
| Cow position: | chr24:33153491-33153720 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 39, 119 |
| Conread position: | 39-271 |
| Cow position: | chr24:29679603-29679362 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 179 |
| Conread position: | 39-296 |
| Cow position: | chr24:7079500-7079763 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 105, 53 |
| Conread position: | 39-303 |
| Cow position: | chr24:34369297-34369029 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 109, 167 |
| Conread position: | 41-275 |
| Cow position: | chr24:17412448-17412691 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 120, 78 |
| Conread position: | 41-294 |
| Cow position: | chr24:42581120-42580873 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 159 |
| Conread position: | 44-246 |
| Cow position: | chr24:29027763-29027966 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 168, 33 |
| Conread position: | 45-269 |
| Cow position: | chr24:6161132-6160905 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 33, 158 |
| Conread position: | 45-288 |
| Cow position: | chr24:27683727-27683482 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 157 |
| Conread position: | 46-254 |
| Cow position: | chr24:39500567-39500348 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 46-290 |
| Cow position: | chr24:14746353-14746599 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 116, 228 |
| Conread position: | 46-303 |
| Cow position: | chr24:18243749-18243490 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 32, 73 |
| Conread position: | 46-303 |
| Cow position: | chr24:39955330-39955073 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 169 |
| Conread position: | 47-258 |
| Cow position: | chr24:27341307-27341087 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 47-290 |
| Cow position: | chr24:18025254-18025001 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 29, 159 |
| Conread position: | 47-303 |
| Cow position: | chr24:31378471-31378734 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 30, 148 |
| Conread position: | 47-400 |
| Cow position: | chr24:43733686-43734044 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 263 |
| Conread position: | 48-293 |
| Cow position: | chr24:6341887-6342146 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 233 |
| Conread position: | 48-400 |
| Cow position: | chr24:38266911-38267251 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 30, 117 |
| Conread position: | 51-303 |
| Cow position: | chr24:39681576-39681833 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 144 |
| Conread position: | 51-307 |
| Cow position: | chr24:43364084-43364342 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 53-286 |
| Cow position: | chr24:27967803-27968039 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 30, 149 |
| Conread position: | 54-303 |
| Cow position: | chr24:19769222-19769466 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 83 |
| Conread position: | 56-270 |
| Cow position: | chr24:18390562-18390341 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 57-307 |
| Cow position: | chr24:37205152-37204894 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 62-303 |
| Cow position: | chr24:40091839-40091599 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 14, 207 |
| Conread position: | 67-293 |
| Cow position: | chr24:32158533-32158305 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 89, 120 |
| Conread position: | 67-307 |
| Cow position: | chr24:2970870-2970624 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 11, 226 |
| Conread position: | 92-303 |
| Cow position: | chr24:18695385-18695596 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 105, 179 |
| Conread position: | 112-306 |
| Cow position: | chr24:18787136-18786936 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 142-306 |
| Cow position: | chr24:35827557-35827718 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 137, 66 |
| Conread position: | 146-303 |
| Cow position: | chr24:31258518-31258357 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 150-400 |
| Cow position: | chr24:40855015-40855270 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 166-308 |
| Cow position: | chr24:26455679-26455824 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 126 |
| Conread position: | 167-396 |
| Cow position: | chr24:36713365-36713593 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 211-396 |
| Cow position: | chr24:26394712-26394526 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
Show alignments to all cow chromosomes.