Cow genome map

Conread name: LyN2-AR060E02LN05AFE02F

Conread position: 7-257
Cow position: chr4:51740008-51739759 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 71, 9

Conread position: 7-303
Cow position: chr4:33030255-33030546 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 184, 74

Conread position: 13-294
Cow position: chr4:36755449-36755729 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 192

Conread position: 16-303
Cow position: chr4:21365117-21365403 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 199
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 140, 60

Conread position: 17-298
Cow position: chr4:45114901-45114614 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 54, 6

Conread position: 19-298
Cow position: chr4:52225715-52225996 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 61, 188

Conread position: 19-303
Cow position: chr4:3836982-3837268 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 48, 191

Conread position: 20-189
Cow position: chr4:5979062-5978890 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 62, 50

Conread position: 21-244
Cow position: chr4:5623479-5623263 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 152
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 135, 55

Conread position: 21-264
Cow position: chr4:22259710-22259469 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 40, 65

Conread position: 21-305
Cow position: chr4:22115314-22115605 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 248

Conread position: 25-302
Cow position: chr4:48499560-48499832 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 197
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 170, 111

Conread position: 27-269
Cow position: chr4:4084732-4084489 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 165
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 51, 175

Conread position: 29-255
Cow position: chr4:23066052-23065820 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 41, 0

Conread position: 31-303
Cow position: chr4:2121678-2121403 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 199
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 21, 32

Conread position: 31-303
Cow position: chr4:5999476-5999196 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 183
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 47, 170

Conread position: 36-271
Cow position: chr4:3440129-3440369 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 42, 168

Conread position: 37-258
Cow position: chr4:23060280-23060045 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 41, 175

Conread position: 37-275
Cow position: chr4:25889109-25888862 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 163
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 37-396
Cow position: chr4:18489666-18489303 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 242

Conread position: 38-275
Cow position: chr4:16637873-16637635 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 159
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 137

Conread position: 39-257
Cow position: chr4:32827396-32827175 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 148
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 37, 46

Conread position: 39-269
Cow position: chr4:33971171-33970944 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 156
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 127

Conread position: 39-279
Cow position: chr4:7213859-7213611 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 39, 144

Conread position: 39-280
Cow position: chr4:37915603-37915364 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 27

Conread position: 39-290
Cow position: chr4:9845650-9845899 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 156, 38

Conread position: 39-293
Cow position: chr4:65406634-65406381 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 109, 186

Conread position: 39-306
Cow position: chr4:23311534-23311256 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 206
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 109, 38

Conread position: 40-256
Cow position: chr4:7571136-7571358 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 146
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 40-292
Cow position: chr4:242953-243214 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 0

Conread position: 40-303
Cow position: chr4:19306983-19307255 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 36, 236

Conread position: 41-293
Cow position: chr4:61399697-61399456 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 193, 35

Conread position: 41-300
Cow position: chr4:65116483-65116209 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 103, 270

Conread position: 41-315
Cow position: chr4:39128257-39128534 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 192
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 37, 229

Conread position: 43-198
Cow position: chr4:41898986-41899149 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 43-257
Cow position: chr4:53208969-53209187 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 113, 33

Conread position: 43-269
Cow position: chr4:4321276-4321039 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 35, 159

Conread position: 43-275
Cow position: chr4:509168-508940 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 159
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 119

Conread position: 43-303
Cow position: chr4:10992470-10992203 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 198
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 105, 38

Conread position: 43-303
Cow position: chr4:45918761-45919032 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 33, 63

Conread position: 45-264
Cow position: chr4:46597115-46597335 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 70

Conread position: 45-267
Cow position: chr4:45738750-45738519 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 76, 156

Conread position: 45-270
Cow position: chr4:23853936-23854153 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 33, 99

Conread position: 45-275
Cow position: chr4:38309401-38309171 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 113

Conread position: 45-293
Cow position: chr4:58512831-58512577 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 23, 234

Conread position: 45-297
Cow position: chr4:14159392-14159134 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 185
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 33, 98

Conread position: 46-251
Cow position: chr4:59888866-59888650 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 34, 141

Conread position: 46-307
Cow position: chr4:27997417-27997685 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 189
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 9, 77

Conread position: 47-185
Cow position: chr4:9582-9442 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 47-264
Cow position: chr4:59833674-59833902 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 31, 52

Conread position: 47-269
Cow position: chr4:11090952-11090737 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 29, 100

Conread position: 47-273
Cow position: chr4:25906589-25906363 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 29, 188

Conread position: 47-279
Cow position: chr4:16339858-16339624 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 29, 154

Conread position: 47-293
Cow position: chr4:62411608-62411865 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 175
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 91, 0

Conread position: 47-303
Cow position: chr4:47773898-47773645 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 29, 96

Conread position: 47-303
Cow position: chr4:49001567-49001299 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 31, 0

Conread position: 47-306
Cow position: chr4:25972633-25972897 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 77, 40

Conread position: 48-269
Cow position: chr4:33612628-33612399 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 157
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 18, 145

Conread position: 51-192
Cow position: chr4:46385840-46385691 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 51-251
Cow position: chr4:21064266-21064061 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 152

Conread position: 51-273
Cow position: chr4:961925-961695 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 27, 56

Conread position: 51-273
Cow position: chr4:68795567-68795330 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 51-292
Cow position: chr4:44665629-44665386 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 169
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 156

Conread position: 51-294
Cow position: chr4:31172404-31172663 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 197
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 27, 0

Conread position: 51-302
Cow position: chr4:35869953-35870198 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 27, 89

Conread position: 53-281
Cow position: chr4:26541471-26541718 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 54-293
Cow position: chr4:18439832-18439581 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 24, 0

Conread position: 54-301
Cow position: chr4:22249702-22249453 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 93, 23

Conread position: 55-303
Cow position: chr4:38181423-38181676 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 188
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 150

Conread position: 55-303
Cow position: chr4:51408218-51407976 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 171
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 161, 9

Conread position: 63-301
Cow position: chr4:21258970-21259211 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 97, 15

Conread position: 67-301
Cow position: chr4:65842006-65841773 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 160
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 88, 135

Conread position: 69-267
Cow position: chr4:21073391-21073192 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 137
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 126, 23

Conread position: 81-286
Cow position: chr4:9547749-9547951 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 114, 17

Conread position: 82-294
Cow position: chr4:8650011-8650217 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 60, 117

Conread position: 85-294
Cow position: chr4:36945418-36945208 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 66, 116

Conread position: 89-270
Cow position: chr4:5554015-5553824 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 68, 0

Conread position: 89-279
Cow position: chr4:22860928-22860741 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 102, 65

Conread position: 89-400
Cow position: chr4:46861814-46861509 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 104, 48

Conread position: 91-303
Cow position: chr4:39767125-39767348 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 167
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 96-275
Cow position: chr4:5189222-5189040 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 52, 119

Conread position: 98-302
Cow position: chr4:40623309-40623104 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 96

Conread position: 133-303
Cow position: chr4:50769942-50769773 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 122
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 58, 140

Conread position: 142-303
Cow position: chr4:23166737-23166902 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 142-303
Cow position: chr4:23758635-23758802 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 142-303
Cow position: chr4:41154475-41154642 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 18, 131

Conread position: 154-303
Cow position: chr4:63418079-63417928 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 110

Conread position: 176-404
Cow position: chr4:39531356-39531576 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 6

Conread position: 192-396
Cow position: chr4:66125292-66125496 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 9, 117

Conread position: 193-396
Cow position: chr4:28094049-28093853 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 24, 120

Conread position: 208-398
Cow position: chr4:14812608-14812428 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 269-402
Cow position: chr4:61561523-61561656 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 48, 21

Show alignments to all cow chromosomes.