Cow genome map
| Conread name: | LyN2-AR060E02LN05AFE02F |
| Conread position: | 9-296 |
| Cow position: | chr5:17869444-17869713 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 147, 67 |
| Conread position: | 11-303 |
| Cow position: | chr5:37714174-37713867 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 13-258 |
| Cow position: | chr5:34922102-34921852 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 67, 208 |
| Conread position: | 13-396 |
| Cow position: | chr5:10789944-10789549 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 15-298 |
| Cow position: | chr5:50900643-50900922 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 146, 66 |
| Conread position: | 18-269 |
| Cow position: | chr5:72041961-72042221 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 76 |
| Conread position: | 21-262 |
| Cow position: | chr5:33467299-33467054 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 23-190 |
| Cow position: | chr5:9498132-9498297 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 55, 117 |
| Conread position: | 23-294 |
| Cow position: | chr5:40711700-40711417 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 53, 156 |
| Conread position: | 24-269 |
| Cow position: | chr5:2500438-2500189 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 25-268 |
| Cow position: | chr5:32963884-32963637 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 51, 205 |
| Conread position: | 27-303 |
| Cow position: | chr5:55989488-55989772 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 244 |
| Conread position: | 27-400 |
| Cow position: | chr5:56753474-56753837 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 28-303 |
| Cow position: | chr5:29504860-29505139 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 120, 49 |
| Conread position: | 29-297 |
| Cow position: | chr5:70582149-70581872 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 50, 104 |
| Conread position: | 30-303 |
| Cow position: | chr5:71504878-71505155 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 121, 47 |
| Conread position: | 31-214 |
| Cow position: | chr5:26098982-26099168 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 47, 143 |
| Conread position: | 31-303 |
| Cow position: | chr5:1344107-1343823 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 28 |
| Conread position: | 34-303 |
| Cow position: | chr5:25919860-25919602 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 246, 41 |
| Conread position: | 34-329 |
| Cow position: | chr5:27615268-27615571 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 35-255 |
| Cow position: | chr5:42667633-42667409 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 35-267 |
| Cow position: | chr5:54311088-54311328 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 36-303 |
| Cow position: | chr5:65924943-65924662 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 40, 82 |
| Conread position: | 37-259 |
| Cow position: | chr5:40759736-40759961 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 37-264 |
| Cow position: | chr5:9083094-9083330 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 37-269 |
| Cow position: | chr5:26099613-26099385 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 120 |
| Conread position: | 38-278 |
| Cow position: | chr5:44752552-44752313 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 38, 165 |
| Conread position: | 38-301 |
| Cow position: | chr5:17027856-17028120 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 123, 30 |
| Conread position: | 39-256 |
| Cow position: | chr5:14538890-14538676 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 39-269 |
| Cow position: | chr5:50637590-50637822 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 39-269 |
| Cow position: | chr5:65933169-65932933 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 70 |
| Conread position: | 39-315 |
| Cow position: | chr5:43858669-43858394 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 39, 77 |
| Conread position: | 40-262 |
| Cow position: | chr5:65601220-65601445 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 160 |
| Conread position: | 40-275 |
| Cow position: | chr5:26377907-26377667 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 38, 157 |
| Conread position: | 41-293 |
| Cow position: | chr5:29560170-29560423 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 46, 197 |
| Conread position: | 41-303 |
| Cow position: | chr5:1950300-1950033 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 41-303 |
| Cow position: | chr5:28946298-28946032 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 37, 124 |
| Conread position: | 41-303 |
| Cow position: | chr5:35209711-35209448 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 106, 40 |
| Conread position: | 42-400 |
| Cow position: | chr5:43329931-43329565 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 126 |
| Conread position: | 43-197 |
| Cow position: | chr5:39675681-39675525 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 113, 34 |
| Conread position: | 43-225 |
| Cow position: | chr5:14703205-14703015 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 33, 159 |
| Conread position: | 43-268 |
| Cow position: | chr5:6086799-6086564 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 43-277 |
| Cow position: | chr5:66257405-66257643 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 43-284 |
| Cow position: | chr5:41604372-41604636 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 43-300 |
| Cow position: | chr5:61488348-61488079 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 43-303 |
| Cow position: | chr5:14153905-14154179 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 43-400 |
| Cow position: | chr5:20974681-20974326 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 121 |
| Conread position: | 45-190 |
| Cow position: | chr5:6528445-6528596 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 45-269 |
| Cow position: | chr5:45036785-45037016 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 19, 152 |
| Conread position: | 45-306 |
| Cow position: | chr5:45940842-45940579 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 32, 75 |
| Conread position: | 46-277 |
| Cow position: | chr5:34183983-34184232 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 46-296 |
| Cow position: | chr5:1276709-1276442 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 47-197 |
| Cow position: | chr5:41129532-41129682 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 99 |
| Conread position: | 47-283 |
| Cow position: | chr5:6986925-6987174 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 47-301 |
| Cow position: | chr5:66831947-66831685 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 31, 56 |
| Conread position: | 47-303 |
| Cow position: | chr5:48144024-48143756 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 48-275 |
| Cow position: | chr5:18113805-18113573 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 48-303 |
| Cow position: | chr5:41636641-41636899 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 185 |
| Conread position: | 51-258 |
| Cow position: | chr5:27690288-27690075 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 19, 158 |
| Conread position: | 51-264 |
| Cow position: | chr5:50821559-50821772 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 51-279 |
| Cow position: | chr5:9430688-9430458 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 27, 127 |
| Conread position: | 51-303 |
| Cow position: | chr5:64398773-64399040 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 26, 231 |
| Conread position: | 51-399 |
| Cow position: | chr5:41229483-41229822 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 88 |
| Conread position: | 53-271 |
| Cow position: | chr5:21828637-21828861 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 214 |
| Conread position: | 53-283 |
| Cow position: | chr5:27007671-27007907 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 89, 25 |
| Conread position: | 54-283 |
| Cow position: | chr5:39710613-39710852 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 90, 31 |
| Conread position: | 54-284 |
| Cow position: | chr5:40388092-40387864 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 77 |
| Conread position: | 55-259 |
| Cow position: | chr5:18104376-18104155 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 55-301 |
| Cow position: | chr5:68082192-68081949 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 141 |
| Conread position: | 55-303 |
| Cow position: | chr5:51502787-51503035 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 144 |
| Conread position: | 61-271 |
| Cow position: | chr5:39442073-39442291 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 12, 127 |
| Conread position: | 66-273 |
| Cow position: | chr5:62027160-62026947 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 68-277 |
| Cow position: | chr5:72344354-72344135 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 192 |
| Conread position: | 70-253 |
| Cow position: | chr5:504118-503938 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 85, 104 |
| Conread position: | 80-297 |
| Cow position: | chr5:3649659-3649428 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 68, 51 |
| Conread position: | 81-295 |
| Cow position: | chr5:32282133-32282356 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 182 |
| Conread position: | 89-268 |
| Cow position: | chr5:35449064-35449240 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 113 |
| Conread position: | 89-273 |
| Cow position: | chr5:24361344-24361530 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 67, 109 |
| Conread position: | 92-303 |
| Cow position: | chr5:31561349-31561564 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 89, 44 |
| Conread position: | 93-303 |
| Cow position: | chr5:7140290-7140079 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 55 |
| Conread position: | 101-315 |
| Cow position: | chr5:7552596-7552377 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 123-303 |
| Cow position: | chr5:33265602-33265434 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 94, 33 |
| Conread position: | 133-303 |
| Cow position: | chr5:39182056-39181885 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 102 |
| Conread position: | 211-389 |
| Cow position: | chr5:72283900-72283722 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 88 |
Show alignments to all cow chromosomes.