Cow genome map

Conread name: LyN2-AR060E02LN05AFE02F

Conread position: 1-303
Cow position: chr6:48344063-48344374 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 211
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 77, 207

Conread position: 7-303
Cow position: chr6:3118456-3118152 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 76, 131

Conread position: 9-391
Cow position: chr6:17669052-17669416 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 268
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 37, 102

Conread position: 11-291
Cow position: chr6:66874107-66874382 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 67, 105

Conread position: 11-303
Cow position: chr6:56041877-56041582 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 223

Conread position: 13-199
Cow position: chr6:20420128-20420309 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 147, 44

Conread position: 13-275
Cow position: chr6:45065259-45065001 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 65, 130

Conread position: 15-268
Cow position: chr6:49685334-49685592 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 63, 188

Conread position: 17-296
Cow position: chr6:50422320-50422045 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 18, 105

Conread position: 19-279
Cow position: chr6:6701515-6701253 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 58, 179

Conread position: 23-303
Cow position: chr6:22968831-22969124 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 45, 227

Conread position: 23-303
Cow position: chr6:47327311-47327027 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 54, 251

Conread position: 25-294
Cow position: chr6:6995185-6994919 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 195
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 51, 39

Conread position: 25-316
Cow position: chr6:10254001-10254295 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 207
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 51, 36

Conread position: 29-267
Cow position: chr6:64436567-64436317 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 179
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 42, 100

Conread position: 29-269
Cow position: chr6:38440945-38441185 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 49, 127

Conread position: 31-199
Cow position: chr6:7253661-7253484 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 47, 0

Conread position: 31-280
Cow position: chr6:56902629-56902883 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 47, 176

Conread position: 32-289
Cow position: chr6:48573116-48572851 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 193
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 46, 36

Conread position: 34-260
Cow position: chr6:11789767-11790002 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 43, 148

Conread position: 34-283
Cow position: chr6:52401629-52401884 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 42, 105

Conread position: 35-303
Cow position: chr6:44511008-44511287 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 42, 203

Conread position: 38-257
Cow position: chr6:24781791-24781557 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 38-275
Cow position: chr6:16737793-16738035 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 161
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 38-303
Cow position: chr6:44372171-44371904 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 40, 184

Conread position: 39-257
Cow position: chr6:11169481-11169695 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 85, 49

Conread position: 39-257
Cow position: chr6:24327362-24327144 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 151
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 120, 46

Conread position: 39-258
Cow position: chr6:29077502-29077726 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 165

Conread position: 39-271
Cow position: chr6:1891072-1890834 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 37, 234

Conread position: 39-271
Cow position: chr6:68297814-68297573 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 203

Conread position: 39-273
Cow position: chr6:42961594-42961347 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 166
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 200

Conread position: 39-280
Cow position: chr6:32121684-32121925 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 39, 165

Conread position: 39-296
Cow position: chr6:4079610-4079354 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 166

Conread position: 39-306
Cow position: chr6:8318393-8318116 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 40-272
Cow position: chr6:12927894-12928132 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 155
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 38, 147

Conread position: 40-303
Cow position: chr6:14850937-14850671 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 174
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 152, 28

Conread position: 43-306
Cow position: chr6:9026294-9026568 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 43-307
Cow position: chr6:63197394-63197118 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 191
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 83

Conread position: 45-197
Cow position: chr6:13741475-13741630 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 45-257
Cow position: chr6:10176522-10176299 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 112, 201

Conread position: 45-274
Cow position: chr6:45160512-45160279 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 45-303
Cow position: chr6:47625180-47624920 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 192
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 103, 66

Conread position: 45-303
Cow position: chr6:57685938-57686192 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 178
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 96

Conread position: 45-308
Cow position: chr6:19427228-19427503 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 45-399
Cow position: chr6:12934361-12933999 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 21, 209

Conread position: 46-257
Cow position: chr6:35435783-35435989 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 27, 117

Conread position: 46-294
Cow position: chr6:48807219-48806961 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 32, 96

Conread position: 46-303
Cow position: chr6:1907319-1907585 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 186
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 28, 163

Conread position: 46-303
Cow position: chr6:41264906-41265162 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 113, 35

Conread position: 47-190
Cow position: chr6:51398582-51398729 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 108
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 47-262
Cow position: chr6:3952306-3952520 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 166, 30

Conread position: 47-275
Cow position: chr6:34196367-34196135 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 154
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 31, 155

Conread position: 47-281
Cow position: chr6:48281776-48282010 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 161
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 31, 176

Conread position: 47-284
Cow position: chr6:16675603-16675826 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 116, 28

Conread position: 47-291
Cow position: chr6:54807004-54807256 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 32, 216

Conread position: 47-293
Cow position: chr6:60152817-60153069 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 37, 231

Conread position: 47-303
Cow position: chr6:7824544-7824807 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 104, 64

Conread position: 47-303
Cow position: chr6:23986953-23986704 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 172
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 87

Conread position: 47-303
Cow position: chr6:35415740-35415474 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 52

Conread position: 47-306
Cow position: chr6:38018055-38018306 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 178
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 33, 95

Conread position: 47-306
Cow position: chr6:58315830-58316093 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 109, 30

Conread position: 48-203
Cow position: chr6:38594722-38594561 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 48-257
Cow position: chr6:8804745-8804533 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 139
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 48-270
Cow position: chr6:55842378-55842146 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 28, 77

Conread position: 48-278
Cow position: chr6:20255604-20255381 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 30, 84

Conread position: 48-303
Cow position: chr6:16625730-16625984 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 28, 154

Conread position: 48-303
Cow position: chr6:28164577-28164842 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 85

Conread position: 48-303
Cow position: chr6:31425781-31425519 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 30, 180

Conread position: 51-257
Cow position: chr6:25773596-25773391 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 27, 136

Conread position: 51-280
Cow position: chr6:2582660-2582890 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 27, 17

Conread position: 51-290
Cow position: chr6:47026267-47026507 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 170
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 120

Conread position: 53-296
Cow position: chr6:33851996-33851760 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 174
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 103, 25

Conread position: 53-303
Cow position: chr6:827919-827662 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 25, 34

Conread position: 53-307
Cow position: chr6:32677285-32677037 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 177
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 103, 24

Conread position: 53-308
Cow position: chr6:56376560-56376302 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 188
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 107, 24

Conread position: 54-303
Cow position: chr6:13592498-13592750 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 24, 122

Conread position: 54-303
Cow position: chr6:24515405-24515157 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 25, 150

Conread position: 55-292
Cow position: chr6:6367873-6367636 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 172
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 63

Conread position: 56-259
Cow position: chr6:50800616-50800410 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 21, 115

Conread position: 56-263
Cow position: chr6:10422964-10423168 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 145

Conread position: 59-307
Cow position: chr6:14658400-14658647 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 174
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 89, 118

Conread position: 60-303
Cow position: chr6:24545411-24545655 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 163
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 18, 91

Conread position: 60-316
Cow position: chr6:6098488-6098226 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 18, 256

Conread position: 65-303
Cow position: chr6:65871698-65871931 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 171
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 80, 132

Conread position: 66-298
Cow position: chr6:36652222-36652460 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 81, 11

Conread position: 66-303
Cow position: chr6:31635886-31635647 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 27

Conread position: 67-303
Cow position: chr6:24223360-24223113 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 70-307
Cow position: chr6:3545510-3545740 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 125, 59

Conread position: 95-278
Cow position: chr6:37739017-37739205 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 64, 173

Conread position: 101-303
Cow position: chr6:24623140-24622932 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 41, 153

Conread position: 105-303
Cow position: chr6:47204314-47204521 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 118-264
Cow position: chr6:65852689-65852542 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 38, 75

Conread position: 121-375
Cow position: chr6:52731290-52731050 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 181
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 40, 110

Conread position: 219-396
Cow position: chr6:10705374-10705195 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 8

Show alignments to all cow chromosomes.