Cow genome map
| Conread name: | LyN2-AR060E02LN05AFE02F |
| Conread position: | 1-258 |
| Cow position: | chr9:16746012-16745746 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 19 |
| Conread position: | 3-197 |
| Cow position: | chr9:33067378-33067172 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 3-290 |
| Cow position: | chr9:25546966-25546681 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 45, 156 |
| Conread position: | 15-197 |
| Cow position: | chr9:20091358-20091174 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 79 |
| Conread position: | 15-271 |
| Cow position: | chr9:51311990-51311726 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 102, 61 |
| Conread position: | 17-297 |
| Cow position: | chr9:30020295-30020001 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 35 |
| Conread position: | 17-303 |
| Cow position: | chr9:8951220-8950932 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 119 |
| Conread position: | 22-226 |
| Cow position: | chr9:40060014-40060231 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 55, 30 |
| Conread position: | 23-284 |
| Cow position: | chr9:50544321-50544584 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 56, 123 |
| Conread position: | 25-215 |
| Cow position: | chr9:51929012-51928812 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 27-271 |
| Cow position: | chr9:34093118-34093377 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 29-294 |
| Cow position: | chr9:14184981-14184698 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 31-270 |
| Cow position: | chr9:11102519-11102756 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 126, 47 |
| Conread position: | 31-275 |
| Cow position: | chr9:1950220-1949974 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 31-284 |
| Cow position: | chr9:18093360-18093623 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 90 |
| Conread position: | 31-296 |
| Cow position: | chr9:38546700-38546446 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 45, 78 |
| Conread position: | 32-278 |
| Cow position: | chr9:34762550-34762798 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 33-197 |
| Cow position: | chr9:35101169-35101000 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 33-268 |
| Cow position: | chr9:44408334-44408102 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 33-269 |
| Cow position: | chr9:54924927-54924681 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 35-303 |
| Cow position: | chr9:4858834-4858564 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 84 |
| Conread position: | 35-401 |
| Cow position: | chr9:8600637-8600259 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 276 |
| Conread position: | 37-187 |
| Cow position: | chr9:62357233-62357385 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 37-264 |
| Cow position: | chr9:25958711-25958485 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 39, 69 |
| Conread position: | 38-264 |
| Cow position: | chr9:61022907-61022675 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 38-305 |
| Cow position: | chr9:38344192-38343913 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 38-385 |
| Cow position: | chr9:35369177-35368823 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 37, 214 |
| Conread position: | 39-257 |
| Cow position: | chr9:9491085-9490864 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 117, 31 |
| Conread position: | 39-269 |
| Cow position: | chr9:11155801-11155577 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 156 |
| Conread position: | 39-275 |
| Cow position: | chr9:26404085-26403838 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 170 |
| Conread position: | 39-289 |
| Cow position: | chr9:36445917-36445671 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 37, 71 |
| Conread position: | 39-296 |
| Cow position: | chr9:2034467-2034209 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 43, 172 |
| Conread position: | 39-303 |
| Cow position: | chr9:22114337-22114608 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 39, 167 |
| Conread position: | 41-275 |
| Cow position: | chr9:21888463-21888220 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 42-197 |
| Cow position: | chr9:17568427-17568275 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 43-293 |
| Cow position: | chr9:10127378-10127637 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 43-303 |
| Cow position: | chr9:56253191-56252922 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 33, 76 |
| Conread position: | 45-273 |
| Cow position: | chr9:55084007-55084242 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 33, 159 |
| Conread position: | 45-280 |
| Cow position: | chr9:64453833-64454070 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 45-290 |
| Cow position: | chr9:9957110-9956865 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 33, 118 |
| Conread position: | 45-303 |
| Cow position: | chr9:34310324-34310052 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 38, 258 |
| Conread position: | 45-303 |
| Cow position: | chr9:39152397-39152655 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 46-279 |
| Cow position: | chr9:22151799-22152034 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 32, 127 |
| Conread position: | 47-192 |
| Cow position: | chr9:17785173-17785321 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 47-197 |
| Cow position: | chr9:33823379-33823231 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 110, 29 |
| Conread position: | 47-246 |
| Cow position: | chr9:28948140-28947938 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 47-280 |
| Cow position: | chr9:44831769-44832004 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 96, 155 |
| Conread position: | 47-285 |
| Cow position: | chr9:11830296-11830055 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 137 |
| Conread position: | 47-303 |
| Cow position: | chr9:11201867-11201617 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 47-303 |
| Cow position: | chr9:52633207-52633468 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 82 |
| Conread position: | 47-303 |
| Cow position: | chr9:59924829-59924568 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 47, 30 |
| Conread position: | 47-399 |
| Cow position: | chr9:43814727-43814378 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 48-303 |
| Cow position: | chr9:214178-214433 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 29 |
| Conread position: | 48-303 |
| Cow position: | chr9:18110583-18110842 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 111, 19 |
| Conread position: | 51-268 |
| Cow position: | chr9:57951045-57951263 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 92 |
| Conread position: | 51-280 |
| Cow position: | chr9:58204947-58204713 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 51-291 |
| Cow position: | chr9:54437536-54437303 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 51-301 |
| Cow position: | chr9:34468309-34468548 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 51 |
| Conread position: | 51-303 |
| Cow position: | chr9:29808749-29808481 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 51-306 |
| Cow position: | chr9:3932251-3931985 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 51-308 |
| Cow position: | chr9:24997232-24997496 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 56 |
| Conread position: | 53-293 |
| Cow position: | chr9:3724780-3725026 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 23, 215 |
| Conread position: | 54-281 |
| Cow position: | chr9:3169240-3169471 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 21, 144 |
| Conread position: | 54-303 |
| Cow position: | chr9:15950874-15951129 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 145 |
| Conread position: | 54-303 |
| Cow position: | chr9:58669660-58669404 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 56-259 |
| Cow position: | chr9:32625274-32625077 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 5 |
| Conread position: | 56-267 |
| Cow position: | chr9:30749306-30749524 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 211 |
| Conread position: | 56-277 |
| Cow position: | chr9:17806273-17806048 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 56-283 |
| Cow position: | chr9:44108551-44108785 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 57-396 |
| Cow position: | chr9:8612569-8612212 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 345 |
| Conread position: | 62-303 |
| Cow position: | chr9:56861291-56861033 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 16, 216 |
| Conread position: | 70-275 |
| Cow position: | chr9:26555943-26556150 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 146, 92 |
| Conread position: | 71-303 |
| Cow position: | chr9:847657-847888 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 93, 131 |
| Conread position: | 93-283 |
| Cow position: | chr9:48133961-48133771 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 98, 33 |
| Conread position: | 94-303 |
| Cow position: | chr9:15006512-15006726 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 54, 145 |
| Conread position: | 104-303 |
| Cow position: | chr9:32816905-32817114 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 52, 173 |
| Conread position: | 111-303 |
| Cow position: | chr9:11364115-11363919 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 112-306 |
| Cow position: | chr9:39428575-39428775 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 86 |
| Conread position: | 127-303 |
| Cow position: | chr9:32848097-32847913 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 150-292 |
| Cow position: | chr9:5575500-5575354 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 175-399 |
| Cow position: | chr9:3079159-3079383 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 20, 99 |
Show alignments to all cow chromosomes.