Cow genome map

Conread name: LyN2-AR060E02LN05AFE02F

Conread position: 5-303
Cow position: chrX:29032143-29032443 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 72

Conread position: 8-306
Cow position: chrX:21815990-21816298 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 199
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 50

Conread position: 9-264
Cow position: chrX:16416238-16416499 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 139, 0

Conread position: 15-303
Cow position: chrX:7425200-7425498 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 257

Conread position: 15-303
Cow position: chrX:17631066-17630775 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 63, 200

Conread position: 17-296
Cow position: chrX:16284209-16283924 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 250

Conread position: 17-307
Cow position: chrX:38549186-38549477 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 61, 192

Conread position: 21-303
Cow position: chrX:40692996-40692723 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 57, 96

Conread position: 23-292
Cow position: chrX:11561899-11562172 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 122, 18

Conread position: 27-269
Cow position: chrX:17662849-17662597 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 181

Conread position: 29-257
Cow position: chrX:26876131-26875899 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 47, 61

Conread position: 29-291
Cow position: chrX:33827272-33826998 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 49, 0

Conread position: 29-303
Cow position: chrX:24259828-24259553 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 128, 46

Conread position: 29-390
Cow position: chrX:8682180-8681803 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 91

Conread position: 31-293
Cow position: chrX:1978258-1978532 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 41, 18

Conread position: 33-303
Cow position: chrX:6563266-6563552 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 72

Conread position: 33-303
Cow position: chrX:15305534-15305271 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 45, 74

Conread position: 35-303
Cow position: chrX:25419405-25419126 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 36-296
Cow position: chrX:38840645-38840906 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 200
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 40, 82

Conread position: 36-306
Cow position: chrX:2300690-2300956 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 43, 107

Conread position: 37-281
Cow position: chrX:160275-160023 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 46, 40

Conread position: 37-302
Cow position: chrX:13382082-13382358 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 190
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 40, 173

Conread position: 37-303
Cow position: chrX:2383247-2383521 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 39, 167

Conread position: 37-308
Cow position: chrX:20709830-20710109 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 194
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 41, 14

Conread position: 38-303
Cow position: chrX:13323241-13322967 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 187
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 33, 192

Conread position: 39-264
Cow position: chrX:7571666-7571894 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 154
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 32, 162

Conread position: 39-275
Cow position: chrX:29289336-29289581 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 162
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 39-284
Cow position: chrX:1616291-1616032 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 19, 172

Conread position: 39-292
Cow position: chrX:32743298-32743555 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 119

Conread position: 39-300
Cow position: chrX:10866107-10865841 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 174
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 37, 238

Conread position: 39-302
Cow position: chrX:17541724-17541987 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 37, 165

Conread position: 39-302
Cow position: chrX:30162757-30163030 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 192
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 37, 0

Conread position: 39-303
Cow position: chrX:9161348-9161609 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 47, 100

Conread position: 39-303
Cow position: chrX:33803253-33802975 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 41, 0

Conread position: 39-303
Cow position: chrX:44053018-44053288 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 39, 0

Conread position: 40-287
Cow position: chrX:36692996-36693250 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 40-303
Cow position: chrX:39700988-39701252 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 192
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 43, 170

Conread position: 40-306
Cow position: chrX:11674825-11675097 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 184
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 196

Conread position: 41-303
Cow position: chrX:47743837-47744120 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 49, 0

Conread position: 42-292
Cow position: chrX:36840636-36840890 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 194
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 88, 183

Conread position: 43-269
Cow position: chrX:27680167-27680391 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 149, 157

Conread position: 44-292
Cow position: chrX:10302101-10302357 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 20, 0

Conread position: 45-267
Cow position: chrX:43647978-43647753 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 32, 77

Conread position: 45-284
Cow position: chrX:25337945-25338197 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 45-295
Cow position: chrX:25571230-25570973 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 175
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 37, 157

Conread position: 45-303
Cow position: chrX:28111272-28111538 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 33, 0

Conread position: 46-306
Cow position: chrX:2786777-2786525 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 175
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 170, 20

Conread position: 47-275
Cow position: chrX:45414532-45414297 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 155
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 157

Conread position: 47-280
Cow position: chrX:41743681-41743919 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 29, 0

Conread position: 47-291
Cow position: chrX:28787134-28787370 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 165, 30

Conread position: 47-303
Cow position: chrX:19930424-19930681 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 29, 147

Conread position: 48-275
Cow position: chrX:14900952-14900727 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 28, 154

Conread position: 48-302
Cow position: chrX:2648581-2648323 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 28, 0

Conread position: 48-303
Cow position: chrX:18456161-18456434 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 198
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 30, 0

Conread position: 51-267
Cow position: chrX:42381328-42381107 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 27, 151

Conread position: 51-269
Cow position: chrX:16790065-16789856 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 149
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 25, 91

Conread position: 51-280
Cow position: chrX:17725750-17725980 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 104, 25

Conread position: 51-281
Cow position: chrX:34565069-34565287 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 140, 25

Conread position: 51-288
Cow position: chrX:7497017-7497254 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 108, 162

Conread position: 51-303
Cow position: chrX:11746614-11746874 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 25, 224

Conread position: 51-303
Cow position: chrX:21664951-21664691 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 27, 39

Conread position: 51-303
Cow position: chrX:25232362-25232621 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 27, 0

Conread position: 51-306
Cow position: chrX:40788976-40789243 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 194
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 27, 0

Conread position: 51-400
Cow position: chrX:4482734-4483088 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 221

Conread position: 53-279
Cow position: chrX:35681119-35681347 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 71

Conread position: 53-303
Cow position: chrX:30862076-30862344 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 54-287
Cow position: chrX:20792043-20791801 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 24, 0

Conread position: 54-303
Cow position: chrX:35925742-35925985 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 167, 27

Conread position: 55-303
Cow position: chrX:630532-630281 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 182
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 23, 50

Conread position: 56-257
Cow position: chrX:13177688-13177484 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 142

Conread position: 61-262
Cow position: chrX:35273137-35273344 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 9

Conread position: 63-292
Cow position: chrX:41560455-41560234 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 15, 89

Conread position: 66-295
Cow position: chrX:19023225-19023463 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 78, 207

Conread position: 89-308
Cow position: chrX:31340516-31340744 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 59, 179

Conread position: 90-396
Cow position: chrX:38188271-38187956 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 223
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 7, 224

Conread position: 92-269
Cow position: chrX:25966855-25967031 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 109, 126

Conread position: 95-273
Cow position: chrX:32820847-32821029 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 11

Conread position: 98-258
Cow position: chrX:30005089-30005251 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 53, 76

Conread position: 98-281
Cow position: chrX:6479825-6480006 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 97, 23

Conread position: 99-303
Cow position: chrX:16514443-16514233 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 37, 123

Conread position: 101-303
Cow position: chrX:38999667-38999884 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 57, 17

Conread position: 120-268
Cow position: chrX:31273091-31273240 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 75, 24

Conread position: 123-303
Cow position: chrX:8913765-8913951 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 123-303
Cow position: chrX:8915509-8915695 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 154-303
Cow position: chrX:6656265-6656415 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 63

Conread position: 221-400
Cow position: chrX:17216217-17216050 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 62, 74

Show alignments to all cow chromosomes.