Cow genome map
| Conread name: | LyN3-AR17G6 |
| Conread position: | 6-357 |
| Cow position: | chr1:6195344-6194993 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 124 |
| Conread position: | 13-352 |
| Cow position: | chr1:30063475-30063149 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 99, 37 |
| Conread position: | 13-357 |
| Cow position: | chr1:58336940-58336597 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 120 |
| Conread position: | 13-357 |
| Cow position: | chr1:62805077-62805418 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 117 |
| Conread position: | 13-357 |
| Cow position: | chr1:72081868-72081525 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 53 |
| Conread position: | 14-361 |
| Cow position: | chr1:21088516-21088168 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 28 |
| Conread position: | 14-361 |
| Cow position: | chr1:98658809-98659153 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 25 |
| Conread position: | 16-357 |
| Cow position: | chr1:57697069-57697397 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 17-357 |
| Cow position: | chr1:82923089-82923428 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 25 |
| Conread position: | 18-359 |
| Cow position: | chr1:67287919-67287581 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 18-361 |
| Cow position: | chr1:72038472-72038804 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 115 |
| Conread position: | 19-210 |
| Cow position: | chr1:76703188-76703377 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 20-357 |
| Cow position: | chr1:22905844-22905514 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 259, 22 |
| Conread position: | 20-359 |
| Cow position: | chr1:40511917-40512255 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 113 |
| Conread position: | 21-361 |
| Cow position: | chr1:17940703-17941029 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 109 |
| Conread position: | 21-361 |
| Cow position: | chr1:18026704-18027043 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 112 |
| Conread position: | 22-357 |
| Cow position: | chr1:5503059-5502727 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 22-357 |
| Cow position: | chr1:42737551-42737217 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 108 |
| Conread position: | 22-357 |
| Cow position: | chr1:48246931-48246591 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 109 |
| Conread position: | 22-357 |
| Cow position: | chr1:68606449-68606782 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 22-357 |
| Cow position: | chr1:72984590-72984262 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 20 |
| Conread position: | 22-357 |
| Cow position: | chr1:79111583-79111255 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 121 |
| Conread position: | 22-361 |
| Cow position: | chr1:86547046-86547387 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 111 |
| Conread position: | 23-303 |
| Cow position: | chr1:23052855-23052575 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 23-318 |
| Cow position: | chr1:24652368-24652090 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 61, 107 |
| Conread position: | 23-357 |
| Cow position: | chr1:22843732-22843401 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 74, 15 |
| Conread position: | 24-344 |
| Cow position: | chr1:74285698-74286018 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 24-355 |
| Cow position: | chr1:8826137-8825810 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 24-356 |
| Cow position: | chr1:25551052-25550721 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 24-357 |
| Cow position: | chr1:21998865-21999195 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 76 |
| Conread position: | 24-357 |
| Cow position: | chr1:25178938-25179268 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 24-357 |
| Cow position: | chr1:30533930-30534259 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 24-357 |
| Cow position: | chr1:33552018-33551685 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 109 |
| Conread position: | 24-357 |
| Cow position: | chr1:52358167-52358513 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 106 |
| Conread position: | 24-357 |
| Cow position: | chr1:76544444-76544777 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 106 |
| Conread position: | 24-357 |
| Cow position: | chr1:91892028-91892357 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 24-357 |
| Cow position: | chr1:93855608-93855278 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 109 |
| Conread position: | 24-357 |
| Cow position: | chr1:94660765-94660434 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 105 |
| Conread position: | 24-361 |
| Cow position: | chr1:67000101-66999767 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 24-361 |
| Cow position: | chr1:85792770-85792433 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 108 |
| Conread position: | 25-310 |
| Cow position: | chr1:53364646-53364363 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 25-354 |
| Cow position: | chr1:102433950-102434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 105 |
| Conread position: | 25-357 |
| Cow position: | chr1:73069970-73070296 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 75, 46 |
| Conread position: | 27-357 |
| Cow position: | chr1:56143247-56143573 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 28-357 |
| Cow position: | chr1:49973100-49973429 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 105 |
| Conread position: | 28-357 |
| Cow position: | chr1:88131861-88131535 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 106 |
| Conread position: | 29-361 |
| Cow position: | chr1:43570330-43570660 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 10 |
| Conread position: | 30-361 |
| Cow position: | chr1:65387405-65387083 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 103 |
| Conread position: | 42-221 |
| Cow position: | chr1:88374734-88374910 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 42-245 |
| Cow position: | chr1:55321000-55321202 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 42-254 |
| Cow position: | chr1:77115629-77115841 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 42-357 |
| Cow position: | chr1:18139383-18139694 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 42-357 |
| Cow position: | chr1:28874154-28873839 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 91 |
| Conread position: | 42-357 |
| Cow position: | chr1:57663098-57662783 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 54-361 |
| Cow position: | chr1:89769654-89769952 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 91-361 |
| Cow position: | chr1:56724193-56723913 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 105-361 |
| Cow position: | chr1:11860243-11860494 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 27 |
| Conread position: | 167-361 |
| Cow position: | chr1:88563856-88564049 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 138, 78 |
| Conread position: | 204-361 |
| Cow position: | chr1:33713006-33712849 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 103, 60 |
Show alignments to all cow chromosomes.