Cow genome map
| Conread name: | LyN3-AR17G6 |
| Conread position: | 13-357 |
| Cow position: | chr6:5948756-5949096 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 117 |
| Conread position: | 13-361 |
| Cow position: | chr6:13316452-13316798 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 117 |
| Conread position: | 17-361 |
| Cow position: | chr6:43618733-43618389 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 114 |
| Conread position: | 18-353 |
| Cow position: | chr6:1821609-1821945 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 112 |
| Conread position: | 19-357 |
| Cow position: | chr6:11724104-11724429 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 20-347 |
| Cow position: | chr6:34891110-34891437 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 110 |
| Conread position: | 20-357 |
| Cow position: | chr6:27528986-27529327 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 114 |
| Conread position: | 21-348 |
| Cow position: | chr6:1099149-1099472 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 249, 18 |
| Conread position: | 22-356 |
| Cow position: | chr6:8203195-8202861 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 100 |
| Conread position: | 22-357 |
| Cow position: | chr6:3276362-3276697 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 100 |
| Conread position: | 22-357 |
| Cow position: | chr6:3888492-3888803 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 108 |
| Conread position: | 22-357 |
| Cow position: | chr6:28169914-28169581 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 17 |
| Conread position: | 22-357 |
| Cow position: | chr6:30273885-30274214 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 20 |
| Conread position: | 22-361 |
| Cow position: | chr6:6474853-6475194 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 128 |
| Conread position: | 22-361 |
| Cow position: | chr6:13105070-13104731 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 109 |
| Conread position: | 22-361 |
| Cow position: | chr6:30480113-30479779 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 23-205 |
| Cow position: | chr6:36527311-36527130 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 107 |
| Conread position: | 23-242 |
| Cow position: | chr6:18973396-18973616 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 77, 19 |
| Conread position: | 23-357 |
| Cow position: | chr6:914641-914312 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 23-357 |
| Cow position: | chr6:65882222-65881890 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 110 |
| Conread position: | 23-359 |
| Cow position: | chr6:58027684-58027350 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 110 |
| Conread position: | 24-352 |
| Cow position: | chr6:40866314-40866635 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 100 |
| Conread position: | 24-357 |
| Cow position: | chr6:15140167-15140504 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 109 |
| Conread position: | 24-357 |
| Cow position: | chr6:15278801-15279129 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 106 |
| Conread position: | 24-357 |
| Cow position: | chr6:24240063-24239735 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 100 |
| Conread position: | 24-357 |
| Cow position: | chr6:39333859-39334192 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 107 |
| Conread position: | 24-357 |
| Cow position: | chr6:47042191-47042520 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 24-357 |
| Cow position: | chr6:51086953-51086620 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 106 |
| Conread position: | 24-361 |
| Cow position: | chr6:330453-330792 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 243 |
| Conread position: | 24-361 |
| Cow position: | chr6:38271899-38271575 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 24-361 |
| Cow position: | chr6:44000071-43999735 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 95 |
| Conread position: | 24-361 |
| Cow position: | chr6:59918065-59918393 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 124 |
| Conread position: | 25-357 |
| Cow position: | chr6:21973663-21973334 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 108 |
| Conread position: | 25-361 |
| Cow position: | chr6:184775-185109 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 96 |
| Conread position: | 26-297 |
| Cow position: | chr6:34443921-34443652 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 27-353 |
| Cow position: | chr6:31565152-31565471 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 29-322 |
| Cow position: | chr6:10644744-10644458 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 29-352 |
| Cow position: | chr6:28133935-28133617 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 93 |
| Conread position: | 29-356 |
| Cow position: | chr6:58601487-58601160 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 29-361 |
| Cow position: | chr6:68027931-68027595 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 226 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 71, 10 |
| Conread position: | 31-361 |
| Cow position: | chr6:12665316-12665646 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 100 |
| Conread position: | 42-317 |
| Cow position: | chr6:58065732-58065451 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 88 |
| Conread position: | 42-355 |
| Cow position: | chr6:11404522-11404210 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 124 |
| Conread position: | 42-357 |
| Cow position: | chr6:8760298-8760622 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 61, 93 |
| Conread position: | 42-357 |
| Cow position: | chr6:25215211-25214901 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 88 |
| Conread position: | 42-357 |
| Cow position: | chr6:40316381-40316063 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 96 |
| Conread position: | 42-357 |
| Cow position: | chr6:56042724-56043042 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 12 |
| Conread position: | 50-361 |
| Cow position: | chr6:7140479-7140788 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 68 |
| Conread position: | 58-357 |
| Cow position: | chr6:3487447-3487744 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 75 |
| Conread position: | 60-357 |
| Cow position: | chr6:51731071-51730775 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 99-361 |
| Cow position: | chr6:66232749-66232487 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 33 |
| Conread position: | 129-361 |
| Cow position: | chr6:10609812-10609579 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 67, 106 |
| Conread position: | 134-357 |
| Cow position: | chr6:38900272-38900496 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 131 |
| Conread position: | 171-318 |
| Cow position: | chr6:48369973-48369825 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 192-357 |
| Cow position: | chr6:55542406-55542575 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 113, 72 |
Show alignments to all cow chromosomes.