Cow genome map
| Conread name: | LyN3-AR17G6 |
| Conread position: | 10-357 |
| Cow position: | chrX:30365928-30366263 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 90, 29 |
| Conread position: | 14-357 |
| Cow position: | chrX:20720851-20720503 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 104 |
| Conread position: | 14-361 |
| Cow position: | chrX:16015584-16015921 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 28 |
| Conread position: | 14-361 |
| Cow position: | chrX:21589823-21589477 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 119 |
| Conread position: | 15-358 |
| Cow position: | chrX:44388626-44388283 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 120 |
| Conread position: | 19-357 |
| Cow position: | chrX:38148441-38148106 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 111 |
| Conread position: | 20-347 |
| Cow position: | chrX:6014074-6014393 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 18, 100 |
| Conread position: | 20-361 |
| Cow position: | chrX:6281909-6282244 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 102 |
| Conread position: | 20-361 |
| Cow position: | chrX:37813013-37812671 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 58 |
| Conread position: | 21-335 |
| Cow position: | chrX:12183766-12183451 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 104 |
| Conread position: | 22-355 |
| Cow position: | chrX:13053854-13053521 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 22-357 |
| Cow position: | chrX:1547824-1547492 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 103 |
| Conread position: | 22-357 |
| Cow position: | chrX:5296698-5297035 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 114 |
| Conread position: | 22-357 |
| Cow position: | chrX:13416589-13416917 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 20 |
| Conread position: | 22-357 |
| Cow position: | chrX:21059629-21059294 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 102 |
| Conread position: | 22-357 |
| Cow position: | chrX:21830375-21830044 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 22-361 |
| Cow position: | chrX:14595695-14595362 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 111 |
| Conread position: | 22-361 |
| Cow position: | chrX:16362275-16362615 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 22-361 |
| Cow position: | chrX:39563088-39563425 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 61, 96 |
| Conread position: | 23-218 |
| Cow position: | chrX:29793186-29793382 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 108 |
| Conread position: | 23-330 |
| Cow position: | chrX:29286279-29285970 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 244 |
| Conread position: | 23-361 |
| Cow position: | chrX:5322880-5323214 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 100 |
| Conread position: | 24-312 |
| Cow position: | chrX:23455171-23455460 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 24-356 |
| Cow position: | chrX:23389671-23390003 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 24-357 |
| Cow position: | chrX:321311-320983 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 106 |
| Conread position: | 24-357 |
| Cow position: | chrX:2481785-2482117 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 24-357 |
| Cow position: | chrX:4797170-4796831 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 98 |
| Conread position: | 24-357 |
| Cow position: | chrX:18952836-18953168 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 24-357 |
| Cow position: | chrX:23040278-23040609 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 18 |
| Conread position: | 24-357 |
| Cow position: | chrX:23277872-23277541 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 109 |
| Conread position: | 24-357 |
| Cow position: | chrX:27316121-27315788 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 24-357 |
| Cow position: | chrX:29852718-29853052 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 112 |
| Conread position: | 24-361 |
| Cow position: | chrX:5394165-5394501 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 24-361 |
| Cow position: | chrX:12343781-12343451 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 73, 107 |
| Conread position: | 24-361 |
| Cow position: | chrX:32066319-32066656 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 107 |
| Conread position: | 25-357 |
| Cow position: | chrX:21580311-21579981 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 109 |
| Conread position: | 25-357 |
| Cow position: | chrX:24134408-24134743 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 25-357 |
| Cow position: | chrX:26757770-26758098 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 108 |
| Conread position: | 26-314 |
| Cow position: | chrX:9093402-9093114 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 104 |
| Conread position: | 30-357 |
| Cow position: | chrX:26528815-26528491 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 99 |
| Conread position: | 30-361 |
| Cow position: | chrX:28554449-28554125 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 30-361 |
| Cow position: | chrX:31494260-31493927 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 236 |
| Conread position: | 39-357 |
| Cow position: | chrX:13412301-13412619 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 94 |
| Conread position: | 39-357 |
| Cow position: | chrX:15126405-15126723 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 91 |
| Conread position: | 39-357 |
| Cow position: | chrX:29949774-29950086 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 63, 12 |
| Conread position: | 39-361 |
| Cow position: | chrX:8480480-8480159 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 61, 92 |
| Conread position: | 60-357 |
| Cow position: | chrX:19875200-19874904 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 40, 73 |
| Conread position: | 99-360 |
| Cow position: | chrX:30139923-30140187 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 33 |
| Conread position: | 101-357 |
| Cow position: | chrX:971543-971288 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 206, 32 |
| Conread position: | 109-357 |
| Cow position: | chrX:22129015-22129262 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 198, 7 |
| Conread position: | 160-353 |
| Cow position: | chrX:10385037-10384845 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 119, 105 |
| Conread position: | 160-357 |
| Cow position: | chrX:21490894-21490698 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 103, 92 |
| Conread position: | 175-357 |
| Cow position: | chrX:31372508-31372330 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 132, 61 |
| Conread position: | 180-361 |
| Cow position: | chrX:28633737-28633918 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 42 |
| Conread position: | 199-357 |
| Cow position: | chrX:18535173-18535020 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 228-361 |
| Cow position: | chrX:27495560-27495427 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 79, 36 |
Show alignments to all cow chromosomes.