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Cow genome map

           
Conread name:
           
Lym1-jns19bF07.f
        

               
Conread position:
               
1-265
               

               
Cow position:
               
chr1:29792037-29791771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 10
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr1:45007101-45007394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
10, 52
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr1:53397615-53397916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
10, 116
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr1:101551088-101551389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 117
               

               
Conread position:
               
1-303
               

               
Cow position:
               
chr1:98577110-98577409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
10, 103
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:51394041-51394359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 245
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr1:68854813-68855106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 119
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr1:89342357-89342056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:4026819-4027139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 94
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:20125245-20125560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 9
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:26930337-26930024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
10, 76
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:28176641-28176956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
10, 102
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:54258203-54258509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:61392162-61391842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 148
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:72012172-72011862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
10, 47
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr1:90640665-90640978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 9
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr1:3323486-3323825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr1:85028592-85028912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
10, 116
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr1:61725482-61725129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 121
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr1:102519310-102519658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
205, 10
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:53458337-53458700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
10, 71
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr1:99136799-99136427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 116
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr1:3035358-3034995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 41
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr1:10778205-10778567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr1:42874316-42873948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr1:93499254-93499624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:67821587-67821208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 251
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr1:60032971-60032589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 120
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr1:100400567-100400181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 101
               

               
Conread position:
               
1-375
               

               
Cow position:
               
chr1:57576131-57575751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 109
               

               
Conread position:
               
1-376
               

               
Cow position:
               
chr1:22728680-22729057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 56
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:9437912-9437657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
16, 8
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr1:99105255-99104992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
23, 150
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr1:15028311-15028574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
122, 8
               

               
Conread position:
               
2-273
               

               
Cow position:
               
chr1:52036812-52036539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 10
               

               
Conread position:
               
2-282
               

               
Cow position:
               
chr1:13638029-13637761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
202, 93
               

               
Conread position:
               
2-301
               

               
Cow position:
               
chr1:46218215-46218511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
203, 8
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr1:26702565-26702260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
9, 100
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr1:31414331-31414014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 9
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr1:43353017-43352711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr1:45289237-45288925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 8
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr1:54199746-54199435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 8
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr1:69539331-69539644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 9
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr1:69695375-69695045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
2-327
               

               
Cow position:
               
chr1:48105803-48105474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 269
               

               
Conread position:
               
2-327
               

               
Cow position:
               
chr1:52206326-52206637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
315, 9
               

               
Conread position:
               
2-329
               

               
Cow position:
               
chr1:71325613-71325286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 11
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr1:69941332-69940975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 99
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr1:95176569-95176926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 8
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chr1:61564432-61564799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 7
               

               
Conread position:
               
2-366
               

               
Cow position:
               
chr1:1403831-1403477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
9, 70
               

               
Conread position:
               
2-366
               

               
Cow position:
               
chr1:55135473-55135835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 112
               

               
Conread position:
               
2-368
               

               
Cow position:
               
chr1:56225112-56225462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
2-370
               

               
Cow position:
               
chr1:3167432-3167064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
107, 8
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chr1:23634264-23633981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 94
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr1:2075695-2075393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
16, 97
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr1:11873721-11873402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 16
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chr1:64251431-64251094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
107, 159
               

               
Conread position:
               
3-365
               

               
Cow position:
               
chr1:101007974-101007617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
3-366
               

               
Cow position:
               
chr1:98551354-98551724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
201, 92
               

               
Conread position:
               
4-317
               

               
Cow position:
               
chr1:80764917-80764591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
76, 279
               

               
Conread position:
               
9-277
               

               
Cow position:
               
chr1:58439396-58439143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
9-317
               

               
Cow position:
               
chr1:86113773-86113458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 112
               

               
Conread position:
               
9-327
               

               
Cow position:
               
chr1:85596586-85596901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 112
               

               
Conread position:
               
10-256
               

               
Cow position:
               
chr1:88028932-88029171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
204, 101
               

               
Conread position:
               
10-273
               

               
Cow position:
               
chr1:101792455-101792197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 86
               

               
Conread position:
               
10-276
               

               
Cow position:
               
chr1:96018913-96019171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
54, 27
               

               
Conread position:
               
10-298
               

               
Cow position:
               
chr1:46885733-46886026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
10-306
               

               
Cow position:
               
chr1:43893569-43893861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 111
               

               
Conread position:
               
10-308
               

               
Cow position:
               
chr1:81569395-81569093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 111
               

               
Conread position:
               
10-309
               

               
Cow position:
               
chr1:62963925-62964216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
10-314
               

               
Cow position:
               
chr1:8532573-8532270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 113
               

               
Conread position:
               
10-314
               

               
Cow position:
               
chr1:83082645-83082949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 111
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr1:24235877-24235570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
195, 112
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr1:50634770-50634454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
109, 66
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr1:53374075-53374378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 112
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr1:56228893-56229192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 113
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr1:61724379-61724075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
194, 60
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr1:72069185-72068892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
265, 45
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr1:76020039-76019749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
263, 138
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr1:81180344-81180027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chr1:100450551-100450234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
110, 95
               

               
Conread position:
               
10-327
               

               
Cow position:
               
chr1:63596418-63596096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 56
               

               
Conread position:
               
10-346
               

               
Cow position:
               
chr1:81779573-81779913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
186, 87
               

               
Conread position:
               
10-348
               

               
Cow position:
               
chr1:82504608-82504962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 111
               

               
Conread position:
               
10-350
               

               
Cow position:
               
chr1:81228689-81228355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 31
               

               
Conread position:
               
10-363
               

               
Cow position:
               
chr1:71045392-71045756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 140
               

               
Conread position:
               
10-366
               

               
Cow position:
               
chr1:22730403-22730738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
10-372
               

               
Cow position:
               
chr1:41181483-41181855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 58
               

               
Conread position:
               
10-372
               

               
Cow position:
               
chr1:68282435-68282802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 112
               

               
Conread position:
               
10-374
               

               
Cow position:
               
chr1:76223050-76222676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 111
               

               
Conread position:
               
10-377
               

               
Cow position:
               
chr1:31765753-31765377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 53
               

               
Conread position:
               
11-309
               

               
Cow position:
               
chr1:36997839-36998134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
192, 110
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chr1:21092734-21093039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 87
               

               
Conread position:
               
11-355
               

               
Cow position:
               
chr1:14528558-14528207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
193, 107
               

               
Conread position:
               
11-366
               

               
Cow position:
               
chr1:37309868-37309515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 133
               

               
Conread position:
               
12-216
               

               
Cow position:
               
chr1:64462551-64462353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
12-308
               

               
Cow position:
               
chr1:16973208-16972904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 87
               

               
Conread position:
               
13-327
               

               
Cow position:
               
chr1:68276050-68276374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 104
               

               
Conread position:
               
14-244
               

               
Cow position:
               
chr1:44678757-44678982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
214, 102
               

               
Conread position:
               
15-374
               

               
Cow position:
               
chr1:79590746-79591110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 106
               

               
Conread position:
               
18-264
               

               
Cow position:
               
chr1:88338346-88338593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
186, 98
               

               
Conread position:
               
18-307
               

               
Cow position:
               
chr1:33716870-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 18
               

               
Conread position:
               
18-308
               

               
Cow position:
               
chr1:43380374-43380089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 77
               

               
Conread position:
               
18-308
               

               
Cow position:
               
chr1:67014035-67014326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
186, 45
               

               
Conread position:
               
18-317
               

               
Cow position:
               
chr1:44136802-44136519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
186, 93
               

               
Conread position:
               
18-317
               

               
Cow position:
               
chr1:44769460-44769166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 98
               

               
Conread position:
               
18-317
               

               
Cow position:
               
chr1:89742363-89742049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 91
               

               
Conread position:
               
18-327
               

               
Cow position:
               
chr1:100421493-100421792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
22, 82
               

               
Conread position:
               
18-348
               

               
Cow position:
               
chr1:100771085-100770767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
211, 77
               

               
Conread position:
               
18-358
               

               
Cow position:
               
chr1:20002603-20002247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 61
               

               
Conread position:
               
18-358
               

               
Cow position:
               
chr1:101634354-101634697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
186, 61
               

               
Conread position:
               
18-366
               

               
Cow position:
               
chr1:82936935-82936593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 105
               

               
Conread position:
               
18-366
               

               
Cow position:
               
chr1:100551611-100551974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 207
               

               
Conread position:
               
19-327
               

               
Cow position:
               
chr1:66429951-66430257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 103
               

               
Conread position:
               
19-327
               

               
Cow position:
               
chr1:94211884-94212190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 95
               

               
Conread position:
               
19-346
               

               
Cow position:
               
chr1:874293-874627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 97
               

               
Conread position:
               
19-362
               

               
Cow position:
               
chr1:99642711-99642367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
185, 16
               

               
Conread position:
               
19-366
               

               
Cow position:
               
chr1:90868788-90868437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 182
               

               
Conread position:
               
19-366
               

               
Cow position:
               
chr1:100705786-100706135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 53
               

               
Conread position:
               
20-317
               

               
Cow position:
               
chr1:63503992-63504279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
63, 56
               

               
Conread position:
               
22-265
               

               
Cow position:
               
chr1:41093213-41092972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
182, 46
               

               
Conread position:
               
22-349
               

               
Cow position:
               
chr1:24133398-24133077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 54
               

               
Conread position:
               
22-365
               

               
Cow position:
               
chr1:11772428-11772082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 99
               

               
Conread position:
               
23-306
               

               
Cow position:
               
chr1:52039291-52039572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 98
               

               
Conread position:
               
23-343
               

               
Cow position:
               
chr1:68253245-68253567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 98
               

               
Conread position:
               
24-374
               

               
Cow position:
               
chr1:92370702-92370357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 25
               

               
Conread position:
               
25-264
               

               
Cow position:
               
chr1:90297823-90298061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
179, 48
               

               
Conread position:
               
25-317
               

               
Cow position:
               
chr1:21786979-21787277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
25-317
               

               
Cow position:
               
chr1:31348776-31348493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 78
               

               
Conread position:
               
25-317
               

               
Cow position:
               
chr1:61005906-61005609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
179, 77
               

               
Conread position:
               
25-317
               

               
Cow position:
               
chr1:80869762-80870062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 91
               

               
Conread position:
               
25-346
               

               
Cow position:
               
chr1:52329871-52329548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 54
               

               
Conread position:
               
25-351
               

               
Cow position:
               
chr1:63391116-63390787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 91
               

               
Conread position:
               
25-367
               

               
Cow position:
               
chr1:99614108-99614454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
180, 96
               

               
Conread position:
               
25-369
               

               
Cow position:
               
chr1:11914216-11913872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 89
               

               
Conread position:
               
25-369
               

               
Cow position:
               
chr1:82861429-82861788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 96
               

               
Conread position:
               
26-362
               

               
Cow position:
               
chr1:101822840-101822505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
27-317
               

               
Cow position:
               
chr1:7350196-7350489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 93
               

               
Conread position:
               
28-365
               

               
Cow position:
               
chr1:98562819-98563165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 88
               

               
Conread position:
               
35-261
               

               
Cow position:
               
chr1:8659314-8659542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
173, 86
               

               
Conread position:
               
35-301
               

               
Cow position:
               
chr1:85774130-85774391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
169, 52
               

               
Conread position:
               
35-308
               

               
Cow position:
               
chr1:88911229-88910955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
97, 39
               

               
Conread position:
               
35-309
               

               
Cow position:
               
chr1:7739639-7739893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
35-317
               

               
Cow position:
               
chr1:5873307-5873024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 116
               

               
Conread position:
               
35-317
               

               
Cow position:
               
chr1:12596238-12595957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 145
               

               
Conread position:
               
35-317
               

               
Cow position:
               
chr1:44125983-44125700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
67, 123
               

               
Conread position:
               
35-317
               

               
Cow position:
               
chr1:55357614-55357338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
53, 49
               

               
Conread position:
               
35-317
               

               
Cow position:
               
chr1:101547371-101547086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
49, 26
               

               
Conread position:
               
35-317
               

               
Cow position:
               
chr1:102350103-102349807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
73, 211
               

               
Conread position:
               
35-327
               

               
Cow position:
               
chr1:48444512-48444234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 66
               

               
Conread position:
               
35-327
               

               
Cow position:
               
chr1:68951309-68951587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
169, 58
               

               
Conread position:
               
35-327
               

               
Cow position:
               
chr1:77462032-77462320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 41
               

               
Conread position:
               
35-351
               

               
Cow position:
               
chr1:20384959-20384637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 267
               

               
Conread position:
               
35-354
               

               
Cow position:
               
chr1:68818143-68817810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 73
               

               
Conread position:
               
35-355
               

               
Cow position:
               
chr1:3790388-3790079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
29, 7
               

               
Conread position:
               
35-360
               

               
Cow position:
               
chr1:3456538-3456868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
172, 82
               

               
Conread position:
               
35-362
               

               
Cow position:
               
chr1:82884719-82884393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 86
               

               
Conread position:
               
35-365
               

               
Cow position:
               
chr1:95215510-95215187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 37
               

               
Conread position:
               
35-366
               

               
Cow position:
               
chr1:3137592-3137930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
35-366
               

               
Cow position:
               
chr1:22826833-22827161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
35-366
               

               
Cow position:
               
chr1:41004701-41004356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 86
               

               
Conread position:
               
35-366
               

               
Cow position:
               
chr1:41696727-41697062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 86
               

               
Conread position:
               
35-366
               

               
Cow position:
               
chr1:69264488-69264814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 86
               

               
Conread position:
               
35-366
               

               
Cow position:
               
chr1:74822116-74822451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
169, 73
               

               
Conread position:
               
35-369
               

               
Cow position:
               
chr1:11854024-11853678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
168, 79
               

               
Conread position:
               
35-374
               

               
Cow position:
               
chr1:52496442-52496783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 86
               

               
Conread position:
               
36-317
               

               
Cow position:
               
chr1:72035262-72034979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 85
               

               
Conread position:
               
36-347
               

               
Cow position:
               
chr1:79844136-79844448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 85
               

               
Conread position:
               
37-254
               

               
Cow position:
               
chr1:57541831-57541617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
167, 79
               

               
Conread position:
               
37-264
               

               
Cow position:
               
chr1:7583396-7583617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
167, 19
               

               
Conread position:
               
37-296
               

               
Cow position:
               
chr1:16997733-16997475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
156, 39
               

               
Conread position:
               
37-299
               

               
Cow position:
               
chr1:40062116-40062381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
169, 84
               

               
Conread position:
               
37-317
               

               
Cow position:
               
chr1:4374670-4374392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 84
               

               
Conread position:
               
37-327
               

               
Cow position:
               
chr1:25183791-25184091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
166, 237
               

               
Conread position:
               
37-364
               

               
Cow position:
               
chr1:73960368-73960705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 84
               

               
Conread position:
               
38-347
               

               
Cow position:
               
chr1:12871352-12871031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
81, 212
               

               
Conread position:
               
38-366
               

               
Cow position:
               
chr1:53424861-53425180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
237, 80
               

               
Conread position:
               
39-366
               

               
Cow position:
               
chr1:83583286-83582929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
41-317
               

               
Cow position:
               
chr1:21131411-21131148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
108, 62
               

               
Conread position:
               
41-317
               

               
Cow position:
               
chr1:39418446-39418174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 80
               

               
Conread position:
               
41-327
               

               
Cow position:
               
chr1:57698784-57698488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 80
               

               
Conread position:
               
42-264
               

               
Cow position:
               
chr1:89356007-89356229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
163, 74
               

               
Conread position:
               
42-372
               

               
Cow position:
               
chr1:42887587-42887259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
41, 5
               

               
Conread position:
               
43-316
               

               
Cow position:
               
chr1:57639836-57639576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
161, 42
               

               
Conread position:
               
43-366
               

               
Cow position:
               
chr1:39069284-39068952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 183
               

               
Conread position:
               
44-308
               

               
Cow position:
               
chr1:21934504-21934238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
65, 38
               

               
Conread position:
               
44-318
               

               
Cow position:
               
chr1:44164755-44165030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
160, 64
               

               
Conread position:
               
44-350
               

               
Cow position:
               
chr1:84282736-84283050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
116, 77
               

               
Conread position:
               
47-264
               

               
Cow position:
               
chr1:71121184-71121406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
148, 74
               

               
Conread position:
               
49-272
               

               
Cow position:
               
chr1:81579439-81579667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
65, 226
               

               
Conread position:
               
49-317
               

               
Cow position:
               
chr1:80988029-80988292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 52
               

               
Conread position:
               
50-277
               

               
Cow position:
               
chr1:52564106-52563888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
50-317
               

               
Cow position:
               
chr1:12464972-12464719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
154, 73
               

               
Conread position:
               
51-308
               

               
Cow position:
               
chr1:41056366-41056620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 70
               

               
Conread position:
               
51-331
               

               
Cow position:
               
chr1:69445056-69445323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
222, 47
               

               
Conread position:
               
53-356
               

               
Cow position:
               
chr1:4573217-4573505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
151, 58
               

               
Conread position:
               
54-366
               

               
Cow position:
               
chr1:100800042-100800356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 62
               

               
Conread position:
               
55-327
               

               
Cow position:
               
chr1:63435117-63434846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 59
               

               
Conread position:
               
55-327
               

               
Cow position:
               
chr1:73561963-73561690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 66
               

               
Conread position:
               
55-366
               

               
Cow position:
               
chr1:88652317-88652635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 66
               

               
Conread position:
               
56-251
               

               
Cow position:
               
chr1:91370789-91370596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
56-306
               

               
Cow position:
               
chr1:79663977-79663729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
148, 60
               

               
Conread position:
               
56-315
               

               
Cow position:
               
chr1:98360727-98360453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
87, 58
               

               
Conread position:
               
59-374
               

               
Cow position:
               
chr1:34000595-34000923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 62
               

               
Conread position:
               
60-317
               

               
Cow position:
               
chr1:68845789-68845538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
145, 48
               

               
Conread position:
               
60-325
               

               
Cow position:
               
chr1:18937142-18936877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 60
               

               
Conread position:
               
63-327
               

               
Cow position:
               
chr1:22448890-22448627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 58
               

               
Conread position:
               
63-366
               

               
Cow position:
               
chr1:53622662-53622962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
212, 38
               

               
Conread position:
               
64-347
               

               
Cow position:
               
chr1:47008727-47009012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
78, 39
               

               
Conread position:
               
65-374
               

               
Cow position:
               
chr1:666056-666378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
66-350
               

               
Cow position:
               
chr1:61175881-61176162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 5
               

               
Conread position:
               
68-306
               

               
Cow position:
               
chr1:26688779-26688539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
163, 35
               

               
Conread position:
               
69-317
               

               
Cow position:
               
chr1:13413725-13413976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
71-318
               

               
Cow position:
               
chr1:77720525-77720287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
133, 50
               

               
Conread position:
               
72-315
               

               
Cow position:
               
chr1:33811637-33811874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 44
               

               
Conread position:
               
72-376
               

               
Cow position:
               
chr1:68217657-68217359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
75, 49
               

               
Conread position:
               
73-366
               

               
Cow position:
               
chr1:81613089-81613393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
131, 43
               

               
Conread position:
               
74-309
               

               
Cow position:
               
chr1:32341501-32341270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
114, 16
               

               
Conread position:
               
75-317
               

               
Cow position:
               
chr1:97755232-97755463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
142, 42
               

               
Conread position:
               
75-327
               

               
Cow position:
               
chr1:95327448-95327191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
130, 33
               

               
Conread position:
               
76-316
               

               
Cow position:
               
chr1:3752236-3751993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
74, 33
               

               
Conread position:
               
76-347
               

               
Cow position:
               
chr1:77099833-77099568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
78, 45
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr1:91142447-91142169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
127, 42
               

               
Conread position:
               
79-298
               

               
Cow position:
               
chr1:64678410-64678629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
126, 22
               

               
Conread position:
               
83-317
               

               
Cow position:
               
chr1:4290859-4291107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
83-372
               

               
Cow position:
               
chr1:5409897-5409605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
48, 13
               

               
Conread position:
               
86-374
               

               
Cow position:
               
chr1:60907078-60907389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
109, 35
               

               
Conread position:
               
87-265
               

               
Cow position:
               
chr1:86709301-86709120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
90-307
               

               
Cow position:
               
chr1:40599773-40599980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
91-317
               

               
Cow position:
               
chr1:72286327-72286110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
113, 30
               

               
Conread position:
               
92-367
               

               
Cow position:
               
chr1:33719837-33720123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
111, 29
               

               
Conread position:
               
93-366
               

               
Cow position:
               
chr1:84786495-84786768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
94-307
               

               
Cow position:
               
chr1:32631195-32631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
94-309
               

               
Cow position:
               
chr1:55686494-55686278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
110, 27
               

               
Conread position:
               
94-318
               

               
Cow position:
               
chr1:78810761-78810987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
110, 10
               

               
Conread position:
               
95-308
               

               
Cow position:
               
chr1:20422483-20422268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
65, 179
               

               
Conread position:
               
98-332
               

               
Cow position:
               
chr1:31348184-31347954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
98-369
               

               
Cow position:
               
chr1:33997183-33996917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
105, 23
               

               
Conread position:
               
99-278
               

               
Cow position:
               
chr1:61742238-61742060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
99-366
               

               
Cow position:
               
chr1:89510202-89509917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
99-374
               

               
Cow position:
               
chr1:90864569-90864281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 7
               

               
Conread position:
               
100-374
               

               
Cow position:
               
chr1:52488227-52487968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 21
               

               
Conread position:
               
102-317
               

               
Cow position:
               
chr1:99095098-99095309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
122, 9
               

               
Conread position:
               
103-351
               

               
Cow position:
               
chr1:38278313-38278048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
101, 48
               

               
Conread position:
               
107-317
               

               
Cow position:
               
chr1:54478058-54478271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
108-307
               

               
Cow position:
               
chr1:97620103-97619900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
84, 40
               

               
Conread position:
               
108-316
               

               
Cow position:
               
chr1:99609103-99609314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
108-317
               

               
Cow position:
               
chr1:72141301-72141510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
96, 111
               

               
Conread position:
               
108-317
               

               
Cow position:
               
chr1:75744597-75744807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
108-317
               

               
Cow position:
               
chr1:82338048-82337834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
108-355
               

               
Cow position:
               
chr1:80899845-80900108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
108-356
               

               
Cow position:
               
chr1:48580867-48581123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 126
               

               
Conread position:
               
108-366
               

               
Cow position:
               
chr1:21835685-21835939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
97, 125
               

               
Conread position:
               
108-366
               

               
Cow position:
               
chr1:71818726-71818457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
108-366
               

               
Cow position:
               
chr1:100537547-100537807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
96, 159
               

               
Conread position:
               
109-317
               

               
Cow position:
               
chr1:93810181-93810376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 30
               

               
Conread position:
               
109-317
               

               
Cow position:
               
chr1:97806530-97806735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
95, 69
               

               
Conread position:
               
109-318
               

               
Cow position:
               
chr1:34856891-34856683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
149, 95
               

               
Conread position:
               
109-366
               

               
Cow position:
               
chr1:61884653-61884917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
95, 185
               

               
Conread position:
               
110-317
               

               
Cow position:
               
chr1:4032373-4032575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
154, 94
               

               
Conread position:
               
110-325
               

               
Cow position:
               
chr1:37646262-37646045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
40, 88
               

               
Conread position:
               
111-310
               

               
Cow position:
               
chr1:92642697-92642501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
111-317
               

               
Cow position:
               
chr1:20799608-20799832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 187
               

               
Conread position:
               
111-328
               

               
Cow position:
               
chr1:6939899-6939677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
111-346
               

               
Cow position:
               
chr1:84116142-84116378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
164, 36
               

               
Conread position:
               
111-375
               

               
Cow position:
               
chr1:19998295-19998029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
112-317
               

               
Cow position:
               
chr1:7442724-7442930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 46
               

               
Conread position:
               
112-327
               

               
Cow position:
               
chr1:79165351-79165125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
114-314
               

               
Cow position:
               
chr1:99118128-99118333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
90, 190
               

               
Conread position:
               
114-348
               

               
Cow position:
               
chr1:24655703-24655944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 43
               

               
Conread position:
               
116-306
               

               
Cow position:
               
chr1:3757697-3757892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
116-317
               

               
Cow position:
               
chr1:1165345-1165547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
27, 175
               

               
Conread position:
               
116-347
               

               
Cow position:
               
chr1:45555107-45555347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
55, 33
               

               
Conread position:
               
116-351
               

               
Cow position:
               
chr1:45535447-45535692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
87, 40
               

               
Conread position:
               
116-366
               

               
Cow position:
               
chr1:68827160-68826900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
117-308
               

               
Cow position:
               
chr1:70534188-70533995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 167
               

               
Conread position:
               
117-317
               

               
Cow position:
               
chr1:6165997-6166189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
31, 88
               

               
Conread position:
               
117-317
               

               
Cow position:
               
chr1:56711872-56711672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
101, 35
               

               
Conread position:
               
117-317
               

               
Cow position:
               
chr1:57264240-57264049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
169, 31
               

               
Conread position:
               
117-317
               

               
Cow position:
               
chr1:74084443-74084248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
117-317
               

               
Cow position:
               
chr1:95765343-95765143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
86, 154
               

               
Conread position:
               
117-319
               

               
Cow position:
               
chr1:56748336-56748542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
117-363
               

               
Cow position:
               
chr1:30882569-30882325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
117-365
               

               
Cow position:
               
chr1:6941212-6941463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
117-365
               

               
Cow position:
               
chr1:6958625-6958876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
117-365
               

               
Cow position:
               
chr1:81868981-81868726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 103
               

               
Conread position:
               
117-366
               

               
Cow position:
               
chr1:37322260-37321994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
12, 86
               

               
Conread position:
               
117-366
               

               
Cow position:
               
chr1:57635213-57635466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 31
               

               
Conread position:
               
117-368
               

               
Cow position:
               
chr1:96713068-96712801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
118-299
               

               
Cow position:
               
chr1:1916489-1916306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
118-317
               

               
Cow position:
               
chr1:11770546-11770343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
86, 30
               

               
Conread position:
               
118-362
               

               
Cow position:
               
chr1:94403963-94404214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
86, 98
               

               
Conread position:
               
118-363
               

               
Cow position:
               
chr1:5135944-5135708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
118-366
               

               
Cow position:
               
chr1:36931906-36932159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
86, 101
               

               
Conread position:
               
119-311
               

               
Cow position:
               
chr1:81363742-81363925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
156, 29
               

               
Conread position:
               
119-317
               

               
Cow position:
               
chr1:57396181-57395983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
30, 120
               

               
Conread position:
               
119-317
               

               
Cow position:
               
chr1:64160089-64160287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
119-350
               

               
Cow position:
               
chr1:14379782-14379550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
85, 67
               

               
Conread position:
               
119-366
               

               
Cow position:
               
chr1:76470407-76470659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
141, 83
               

               
Conread position:
               
120-308
               

               
Cow position:
               
chr1:49131373-49131178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 159
               

               
Conread position:
               
120-317
               

               
Cow position:
               
chr1:24534494-24534307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
153, 84
               

               
Conread position:
               
120-317
               

               
Cow position:
               
chr1:43505272-43505471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 87
               

               
Conread position:
               
120-317
               

               
Cow position:
               
chr1:89395340-89395548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
120-327
               

               
Cow position:
               
chr1:75967185-75967391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
153, 95
               

               
Conread position:
               
120-364
               

               
Cow position:
               
chr1:47233726-47233476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
84, 99
               

               
Conread position:
               
121-314
               

               
Cow position:
               
chr1:70538353-70538551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
121-366
               

               
Cow position:
               
chr1:78857572-78857325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 27
               

               
Conread position:
               
123-264
               

               
Cow position:
               
chr1:52415207-52415060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
123-301
               

               
Cow position:
               
chr1:85783278-85783457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
123-307
               

               
Cow position:
               
chr1:74013515-74013322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
123-317
               

               
Cow position:
               
chr1:68619185-68618986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 48
               

               
Conread position:
               
123-317
               

               
Cow position:
               
chr1:81563485-81563683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
81, 56
               

               
Conread position:
               
123-327
               

               
Cow position:
               
chr1:93528442-93528658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
123-327
               

               
Cow position:
               
chr1:98708194-98708400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
81, 103
               

               
Conread position:
               
123-347
               

               
Cow position:
               
chr1:49839258-49839488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
26, 149
               

               
Conread position:
               
123-348
               

               
Cow position:
               
chr1:34685947-34686176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
81, 36
               

               
Conread position:
               
123-366
               

               
Cow position:
               
chr1:10632805-10633050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
182, 77
               

               
Conread position:
               
123-374
               

               
Cow position:
               
chr1:50679534-50679267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
125-309
               

               
Cow position:
               
chr1:4293818-4293994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
125-309
               

               
Cow position:
               
chr1:8869911-8869724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
7, 29
               

               
Conread position:
               
125-309
               

               
Cow position:
               
chr1:51531527-51531706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
143, 98
               

               
Conread position:
               
125-317
               

               
Cow position:
               
chr1:25793686-25793488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 172
               

               
Conread position:
               
125-362
               

               
Cow position:
               
chr1:71253801-71253553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
79, 148
               

               
Conread position:
               
125-366
               

               
Cow position:
               
chr1:63905720-63905470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
69, 117
               

               
Conread position:
               
126-317
               

               
Cow position:
               
chr1:84239352-84239166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 86
               

               
Conread position:
               
127-309
               

               
Cow position:
               
chr1:51445635-51445819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
127-317
               

               
Cow position:
               
chr1:30504227-30504418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
77, 21
               

               
Conread position:
               
127-374
               

               
Cow position:
               
chr1:10655233-10655494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
128-317
               

               
Cow position:
               
chr1:3962927-3962748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
129-304
               

               
Cow position:
               
chr1:25281918-25281742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
75, 87
               

               
Conread position:
               
129-317
               

               
Cow position:
               
chr1:54732699-54732521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
146, 11
               

               
Conread position:
               
129-374
               

               
Cow position:
               
chr1:55229742-55229988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
76, 173
               

               
Conread position:
               
130-307
               

               
Cow position:
               
chr1:20287876-20288055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
74, 18
               

               
Conread position:
               
130-317
               

               
Cow position:
               
chr1:31235175-31234980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
130-366
               

               
Cow position:
               
chr1:70434751-70435003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 192
               

               
Conread position:
               
131-308
               

               
Cow position:
               
chr1:62732335-62732514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
62, 166
               

               
Conread position:
               
131-317
               

               
Cow position:
               
chr1:44506728-44506915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
73, 37
               

               
Conread position:
               
131-317
               

               
Cow position:
               
chr1:95056815-95057002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
72, 139
               

               
Conread position:
               
131-366
               

               
Cow position:
               
chr1:71079193-71078956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
72, 22
               

               
Conread position:
               
132-317
               

               
Cow position:
               
chr1:40531348-40531166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
72, 35
               

               
Conread position:
               
132-318
               

               
Cow position:
               
chr1:96635595-96635420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
133-281
               

               
Cow position:
               
chr1:62996257-62996405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
133-294
               

               
Cow position:
               
chr1:65637966-65638133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
133-317
               

               
Cow position:
               
chr1:64189264-64189444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
134-327
               

               
Cow position:
               
chr1:100512359-100512559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
135-366
               

               
Cow position:
               
chr1:102784724-102784962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
69, 149
               

               
Conread position:
               
136-316
               

               
Cow position:
               
chr1:19545334-19545153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
137-296
               

               
Cow position:
               
chr1:99543283-99543123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 124
               

               
Conread position:
               
139-317
               

               
Cow position:
               
chr1:43389280-43389104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
65, 103
               

               
Conread position:
               
139-317
               

               
Cow position:
               
chr1:95050332-95050146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
139-327
               

               
Cow position:
               
chr1:15333650-15333844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:3429741-3429538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 86
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:79278674-79278469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
64, 39
               

               
Conread position:
               
140-317
               

               
Cow position:
               
chr1:78809652-78809827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
64, 93
               

               
Conread position:
               
140-327
               

               
Cow position:
               
chr1:43358245-43358052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
142-376
               

               
Cow position:
               
chr1:55705483-55705245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 193
               

               
Conread position:
               
143-319
               

               
Cow position:
               
chr1:7449903-7450078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 78
               

               
Conread position:
               
144-309
               

               
Cow position:
               
chr1:49753705-49753867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 24
               

               
Conread position:
               
144-314
               

               
Cow position:
               
chr1:7186560-7186739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
144-326
               

               
Cow position:
               
chr1:26200993-26201178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
59, 115
               

               
Conread position:
               
144-327
               

               
Cow position:
               
chr1:53540163-53540349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
59, 120
               

               
Conread position:
               
145-317
               

               
Cow position:
               
chr1:14981346-14981174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 56
               

               
Conread position:
               
146-372
               

               
Cow position:
               
chr1:90976309-90976078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
148-294
               

               
Cow position:
               
chr1:71952864-71953006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 89
               

               
Conread position:
               
148-326
               

               
Cow position:
               
chr1:87072481-87072654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
56, 119
               

               
Conread position:
               
149-366
               

               
Cow position:
               
chr1:34771726-34771499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 61
               

               
Conread position:
               
150-327
               

               
Cow position:
               
chr1:52956038-52956213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 69
               

               
Conread position:
               
150-347
               

               
Cow position:
               
chr1:98030693-98030894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
55, 125
               

               
Conread position:
               
151-366
               

               
Cow position:
               
chr1:7971210-7971415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
124, 53
               

               
Conread position:
               
152-327
               

               
Cow position:
               
chr1:6305088-6304903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
152-327
               

               
Cow position:
               
chr1:45673492-45673669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
53, 35
               

               
Conread position:
               
156-317
               

               
Cow position:
               
chr1:74956239-74956074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
162-365
               

               
Cow position:
               
chr1:95654925-95654710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 138
               

               
Conread position:
               
162-366
               

               
Cow position:
               
chr1:75382782-75382985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 103
               

               
Conread position:
               
164-317
               

               
Cow position:
               
chr1:98310854-98311015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
166-353
               

               
Cow position:
               
chr1:4414413-4414218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
168-374
               

               
Cow position:
               
chr1:72103643-72103862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
169-308
               

               
Cow position:
               
chr1:28563771-28563629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
170-317
               

               
Cow position:
               
chr1:43340824-43340665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
170-317
               

               
Cow position:
               
chr1:89438137-89437990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 101
               

               
Conread position:
               
171-306
               

               
Cow position:
               
chr1:94261347-94261478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
172-314
               

               
Cow position:
               
chr1:24542781-24542638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
179-317
               

               
Cow position:
               
chr1:51654218-51654358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
179-374
               

               
Cow position:
               
chr1:82443649-82443442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
185-349
               

               
Cow position:
               
chr1:89082921-89083096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
185-374
               

               
Cow position:
               
chr1:42398383-42398179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
187-359
               

               
Cow position:
               
chr1:68763866-68763687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
17, 86
               

               
Conread position:
               
192-317
               

               
Cow position:
               
chr1:20667921-20667795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 78
               

               
Conread position:
               
197-317
               

               
Cow position:
               
chr1:87095403-87095283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
201-327
               

               
Cow position:
               
chr1:51684632-51684761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
206-327
               

               
Cow position:
               
chr1:33207035-33206916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
69, 52
               

               
Conread position:
               
223-327
               

               
Cow position:
               
chr1:65909379-65909487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               
Show alignments to all cow chromosomes.