Cow genome map
| Conread name: | Lym1-jns19bF07.f | 
| Conread position: | 1-260 | 
| Cow position: | chr6:11789066-11789324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 10, 116 | 
| Conread position: | 1-264 | 
| Cow position: | chr6:52002034-52002295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 10, 99 | 
| Conread position: | 1-304 | 
| Cow position: | chr6:9751380-9751078 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 119, 237 | 
| Conread position: | 1-308 | 
| Cow position: | chr6:57474044-57474349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 10, 109 | 
| Conread position: | 1-317 | 
| Cow position: | chr6:4864872-4864568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 9 | 
| Conread position: | 1-317 | 
| Cow position: | chr6:44098754-44099067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 203, 9 | 
| Conread position: | 1-327 | 
| Cow position: | chr6:24327471-24327148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 121 | 
| Conread position: | 1-327 | 
| Cow position: | chr6:34075691-34076020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 101 | 
| Conread position: | 1-350 | 
| Cow position: | chr6:52478778-52478399 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 10, 296 | 
| Conread position: | 1-362 | 
| Cow position: | chr6:12550932-12551304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 10, 116 | 
| Conread position: | 1-362 | 
| Cow position: | chr6:15305253-15305605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 84 | 
| Conread position: | 1-366 | 
| Cow position: | chr6:6068024-6067664 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 10, 103 | 
| Conread position: | 1-366 | 
| Cow position: | chr6:18961856-18961477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 10, 68 | 
| Conread position: | 1-372 | 
| Cow position: | chr6:46205682-46206057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 121 | 
| Conread position: | 1-375 | 
| Cow position: | chr6:21312091-21311711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 101 | 
| Conread position: | 2-296 | 
| Cow position: | chr6:12934473-12934180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 147, 84 | 
| Conread position: | 2-299 | 
| Cow position: | chr6:29077396-29077692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 202, 9 | 
| Conread position: | 2-300 | 
| Cow position: | chr6:8209920-8209628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 9, 100 | 
| Conread position: | 2-310 | 
| Cow position: | chr6:10106333-10106018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 9 | 
| Conread position: | 2-317 | 
| Cow position: | chr6:8636942-8637255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 10 | 
| Conread position: | 2-317 | 
| Cow position: | chr6:65870692-65871010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 9 | 
| Conread position: | 2-327 | 
| Cow position: | chr6:17090259-17090592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 91, 144 | 
| Conread position: | 2-327 | 
| Cow position: | chr6:42565353-42565682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 201, 9 | 
| Conread position: | 3-262 | 
| Cow position: | chr6:25783981-25784237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 200, 8 | 
| Conread position: | 3-308 | 
| Cow position: | chr6:48807322-48807024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 8, 54 | 
| Conread position: | 3-351 | 
| Cow position: | chr6:13741363-13741714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 89 | 
| Conread position: | 3-375 | 
| Cow position: | chr6:1886981-1886619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 8, 107 | 
| Conread position: | 4-369 | 
| Cow position: | chr6:25407739-25407351 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 6-264 | 
| Cow position: | chr6:6167074-6167324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 6, 0 | 
| Conread position: | 6-317 | 
| Cow position: | chr6:27852034-27851727 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 197, 110 | 
| Conread position: | 10-262 | 
| Cow position: | chr6:26837710-26837460 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 195, 61 | 
| Conread position: | 10-308 | 
| Cow position: | chr6:55474924-55475224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 193, 111 | 
| Conread position: | 10-315 | 
| Cow position: | chr6:14839352-14839046 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 194, 111 | 
| Conread position: | 10-316 | 
| Cow position: | chr6:36470891-36470587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 93 | 
| Conread position: | 10-316 | 
| Cow position: | chr6:41824154-41823842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 111 | 
| Conread position: | 10-317 | 
| Cow position: | chr6:8318491-8318183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 140, 87 | 
| Conread position: | 10-317 | 
| Cow position: | chr6:8562390-8562700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 193, 111 | 
| Conread position: | 10-318 | 
| Cow position: | chr6:50120112-50119805 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 92 | 
| Conread position: | 10-327 | 
| Cow position: | chr6:606936-607253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 194, 106 | 
| Conread position: | 10-327 | 
| Cow position: | chr6:10176624-10176303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 194, 86 | 
| Conread position: | 10-327 | 
| Cow position: | chr6:36928327-36928649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 2.8026e-45 | 
| Alignm gaps (pig, cow): | 188, 95 | 
| Conread position: | 10-327 | 
| Cow position: | chr6:47305002-47305331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 133, 111 | 
| Conread position: | 10-327 | 
| Cow position: | chr6:58073717-58074040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 209, 0 | 
| Conread position: | 10-356 | 
| Cow position: | chr6:49398943-49398591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 112 | 
| Conread position: | 10-361 | 
| Cow position: | chr6:16410870-16411224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 194, 111 | 
| Conread position: | 10-365 | 
| Cow position: | chr6:33302085-33302440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 66 | 
| Conread position: | 10-369 | 
| Cow position: | chr6:18987893-18988253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 194, 13 | 
| Conread position: | 10-372 | 
| Cow position: | chr6:11169382-11169744 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 187, 106 | 
| Conread position: | 10-374 | 
| Cow position: | chr6:3978987-3978616 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 193, 88 | 
| Conread position: | 10-375 | 
| Cow position: | chr6:47540199-47540566 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 112 | 
| Conread position: | 11-317 | 
| Cow position: | chr6:1784090-1783797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 194, 75 | 
| Conread position: | 11-317 | 
| Cow position: | chr6:2607289-2607595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 192, 87 | 
| Conread position: | 11-325 | 
| Cow position: | chr6:5944626-5944309 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 191, 104 | 
| Conread position: | 11-327 | 
| Cow position: | chr6:53178314-53178629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 111 | 
| Conread position: | 11-350 | 
| Cow position: | chr6:66363569-66363233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 192, 110 | 
| Conread position: | 12-327 | 
| Cow position: | chr6:58075904-58076222 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 89 | 
| Conread position: | 12-366 | 
| Cow position: | chr6:24781888-24781517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 98 | 
| Conread position: | 15-347 | 
| Cow position: | chr6:10422844-10423182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 54, 224 | 
| Conread position: | 18-262 | 
| Cow position: | chr6:52556789-52556549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 176, 80 | 
| Conread position: | 18-264 | 
| Cow position: | chr6:60152718-60152963 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 187, 103 | 
| Conread position: | 18-308 | 
| Cow position: | chr6:32121593-32121882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 103 | 
| Conread position: | 18-317 | 
| Cow position: | chr6:35181570-35181280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 61 | 
| Conread position: | 18-317 | 
| Cow position: | chr6:37634472-37634764 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 98 | 
| Conread position: | 18-317 | 
| Cow position: | chr6:67214424-67214725 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 201, 105 | 
| Conread position: | 18-327 | 
| Cow position: | chr6:5095872-5095554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 203 | 
| Conread position: | 18-346 | 
| Cow position: | chr6:23695680-23696008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 103 | 
| Conread position: | 18-366 | 
| Cow position: | chr6:35990546-35990198 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 133 | 
| Conread position: | 18-366 | 
| Cow position: | chr6:54140500-54140834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 98 | 
| Conread position: | 18-374 | 
| Cow position: | chr6:10332424-10332055 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 242 | 
| Conread position: | 18-374 | 
| Cow position: | chr6:51835084-51835446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 185, 11 | 
| Conread position: | 18-383 | 
| Cow position: | chr6:35842343-35842700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 242, 103 | 
| Conread position: | 19-317 | 
| Cow position: | chr6:16699945-16700245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 77 | 
| Conread position: | 19-366 | 
| Cow position: | chr6:5958332-5957990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 184, 52 | 
| Conread position: | 19-374 | 
| Cow position: | chr6:60859620-60859259 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 184, 82 | 
| Conread position: | 25-264 | 
| Cow position: | chr6:1914314-1914548 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 178, 46 | 
| Conread position: | 25-308 | 
| Cow position: | chr6:5302710-5302445 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 25-317 | 
| Cow position: | chr6:12337674-12337969 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 180, 91 | 
| Conread position: | 25-317 | 
| Cow position: | chr6:16737710-16738000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 178, 84 | 
| Conread position: | 25-317 | 
| Cow position: | chr6:20231136-20230848 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 89 | 
| Conread position: | 25-317 | 
| Cow position: | chr6:46557747-46558033 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 178, 96 | 
| Conread position: | 25-327 | 
| Cow position: | chr6:40031883-40032182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 91 | 
| Conread position: | 25-351 | 
| Cow position: | chr6:51674599-51674929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 93, 210 | 
| Conread position: | 26-366 | 
| Cow position: | chr6:5609768-5609407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 90, 305 | 
| Conread position: | 27-356 | 
| Cow position: | chr6:6614126-6614465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 176, 87 | 
| Conread position: | 28-366 | 
| Cow position: | chr6:60350613-60350254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 18, 9 | 
| Conread position: | 30-308 | 
| Cow position: | chr6:24031069-24031351 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 91 | 
| Conread position: | 31-277 | 
| Cow position: | chr6:20056324-20056572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 20, 82 | 
| Conread position: | 35-265 | 
| Cow position: | chr6:1174802-1174571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 156, 81 | 
| Conread position: | 35-273 | 
| Cow position: | chr6:60467727-60467959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 169, 86 | 
| Conread position: | 35-277 | 
| Cow position: | chr6:6471073-6470829 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 169, 31 | 
| Conread position: | 35-308 | 
| Cow position: | chr6:63047276-63047550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 169, 25 | 
| Conread position: | 35-314 | 
| Cow position: | chr6:32210930-32210651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 114 | 
| Conread position: | 35-314 | 
| Cow position: | chr6:36652129-36652396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 167, 36 | 
| Conread position: | 35-317 | 
| Cow position: | chr6:2012718-2012999 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 169, 86 | 
| Conread position: | 35-317 | 
| Cow position: | chr6:9008908-9008631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 75 | 
| Conread position: | 35-317 | 
| Cow position: | chr6:61575303-61575589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 169, 81 | 
| Conread position: | 35-327 | 
| Cow position: | chr6:31525751-31526036 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 169, 66 | 
| Conread position: | 35-360 | 
| Cow position: | chr6:29210201-29210529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 281, 81 | 
| Conread position: | 35-362 | 
| Cow position: | chr6:46465527-46465855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 87 | 
| Conread position: | 35-362 | 
| Cow position: | chr6:49410980-49410663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 86, 33 | 
| Conread position: | 35-366 | 
| Cow position: | chr6:38770998-38771323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 75, 6 | 
| Conread position: | 35-366 | 
| Cow position: | chr6:62925292-62924960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 6 | 
| Conread position: | 35-372 | 
| Cow position: | chr6:50446060-50445722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 81 | 
| Conread position: | 36-311 | 
| Cow position: | chr6:46666806-46667086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 86 | 
| Conread position: | 36-317 | 
| Cow position: | chr6:53401071-53401336 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 37-262 | 
| Cow position: | chr6:611268-611487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 167, 65 | 
| Conread position: | 37-308 | 
| Cow position: | chr6:33852082-33851826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 166, 84 | 
| Conread position: | 37-316 | 
| Cow position: | chr6:19508730-19508461 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 76, 64 | 
| Conread position: | 37-327 | 
| Cow position: | chr6:64431643-64431928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 64 | 
| Conread position: | 38-317 | 
| Cow position: | chr6:15938162-15937871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 78, 146 | 
| Conread position: | 39-347 | 
| Cow position: | chr6:13688108-13687798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 166, 82 | 
| Conread position: | 40-366 | 
| Cow position: | chr6:55282585-55282256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 40, 72 | 
| Conread position: | 41-365 | 
| Cow position: | chr6:63272912-63272574 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 78, 109 | 
| Conread position: | 41-372 | 
| Cow position: | chr6:1770490-1770154 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 162, 80 | 
| Conread position: | 42-309 | 
| Cow position: | chr6:2546949-2547217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 162, 79 | 
| Conread position: | 43-317 | 
| Cow position: | chr6:28476885-28477158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 59, 175 | 
| Conread position: | 44-348 | 
| Cow position: | chr6:54369188-54368884 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 57 | 
| Conread position: | 44-362 | 
| Cow position: | chr6:46570829-46571140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 161, 41 | 
| Conread position: | 44-366 | 
| Cow position: | chr6:34196440-34196113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 160, 67 | 
| Conread position: | 47-317 | 
| Cow position: | chr6:642866-642584 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 157, 62 | 
| Conread position: | 50-317 | 
| Cow position: | chr6:54867226-54867494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 153, 49 | 
| Conread position: | 50-328 | 
| Cow position: | chr6:57164141-57164421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 2.8026e-45 | 
| Alignm gaps (pig, cow): | 60, 109 | 
| Conread position: | 51-268 | 
| Cow position: | chr6:37331682-37331892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 24, 41 | 
| Conread position: | 55-308 | 
| Cow position: | chr6:21534778-21535027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 59 | 
| Conread position: | 60-382 | 
| Cow position: | chr6:6264370-6264693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 31, 44 | 
| Conread position: | 61-351 | 
| Cow position: | chr6:47150504-47150811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 142, 55 | 
| Conread position: | 63-317 | 
| Cow position: | chr6:42961640-42961381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 21 | 
| Conread position: | 63-350 | 
| Cow position: | chr6:50746704-50747004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 119 | 
| Conread position: | 63-374 | 
| Cow position: | chr6:54365596-54365282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 53 | 
| Conread position: | 64-384 | 
| Cow position: | chr6:48281723-48282049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 57 | 
| Conread position: | 67-362 | 
| Cow position: | chr6:35471795-35471500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 54 | 
| Conread position: | 68-317 | 
| Cow position: | chr6:61515465-61515211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 137, 46 | 
| Conread position: | 70-264 | 
| Cow position: | chr6:35769748-35769555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 134, 51 | 
| Conread position: | 71-366 | 
| Cow position: | chr6:52248402-52248094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 35, 49 | 
| Conread position: | 79-317 | 
| Cow position: | chr6:3952268-3952498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 42 | 
| Conread position: | 81-308 | 
| Cow position: | chr6:64436597-64436350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 81-317 | 
| Cow position: | chr6:54293856-54294088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 6.99949e-42 | 
| Alignm gaps (pig, cow): | 124, 33 | 
| Conread position: | 81-317 | 
| Cow position: | chr6:64449137-64449372 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 40 | 
| Conread position: | 87-290 | 
| Cow position: | chr6:3719257-3719051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 57, 34 | 
| Conread position: | 87-356 | 
| Cow position: | chr6:31535821-31535541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 117, 66 | 
| Conread position: | 87-362 | 
| Cow position: | chr6:53710867-53711149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 118, 61 | 
| Conread position: | 90-302 | 
| Cow position: | chr6:20329775-20329991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 114, 27 | 
| Conread position: | 90-309 | 
| Cow position: | chr6:56849772-56849984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 183, 31 | 
| Conread position: | 91-293 | 
| Cow position: | chr6:1002479-1002277 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 54, 30 | 
| Conread position: | 91-366 | 
| Cow position: | chr6:38853903-38853621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 23 | 
| Conread position: | 92-374 | 
| Cow position: | chr6:7103482-7103195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 19, 39 | 
| Conread position: | 93-345 | 
| Cow position: | chr6:54991235-54990990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 112, 28 | 
| Conread position: | 95-358 | 
| Cow position: | chr6:61113509-61113781 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 108, 20 | 
| Conread position: | 95-366 | 
| Cow position: | chr6:9736880-9736619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 94, 26 | 
| Conread position: | 96-265 | 
| Cow position: | chr6:45155867-45156037 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 96-316 | 
| Cow position: | chr6:3929082-3929297 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 12, 21 | 
| Conread position: | 97-308 | 
| Cow position: | chr6:13040212-13040428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 6e-30 | 
| Alignm gaps (pig, cow): | 6, 25 | 
| Conread position: | 97-372 | 
| Cow position: | chr6:50983969-50984266 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 71, 19 | 
| Conread position: | 98-314 | 
| Cow position: | chr6:20098202-20097987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 106, 23 | 
| Conread position: | 99-374 | 
| Cow position: | chr6:34251512-34251250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 105, 22 | 
| Conread position: | 100-327 | 
| Cow position: | chr6:130400-130170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 104, 21 | 
| Conread position: | 104-317 | 
| Cow position: | chr6:388935-389150 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 77 | 
| Conread position: | 107-365 | 
| Cow position: | chr6:4383262-4383517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 97, 49 | 
| Conread position: | 107-374 | 
| Cow position: | chr6:16746109-16746389 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 99, 85 | 
| Conread position: | 108-317 | 
| Cow position: | chr6:7824533-7824743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 95, 34 | 
| Conread position: | 108-317 | 
| Cow position: | chr6:67950729-67950932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 97, 111 | 
| Conread position: | 108-355 | 
| Cow position: | chr6:24468620-24468368 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 44, 13 | 
| Conread position: | 108-366 | 
| Cow position: | chr6:16103432-16103158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 9e-34 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 109-300 | 
| Cow position: | chr6:51398572-51398764 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 95, 182 | 
| Conread position: | 109-351 | 
| Cow position: | chr6:37148970-37149208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 95, 17 | 
| Conread position: | 109-372 | 
| Cow position: | chr6:19401633-19401888 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 94, 103 | 
| Conread position: | 109-372 | 
| Cow position: | chr6:49685356-49685629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 95, 143 | 
| Conread position: | 110-318 | 
| Cow position: | chr6:21542092-21542301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 5e-39 | 
| Alignm gaps (pig, cow): | 94, 149 | 
| Conread position: | 112-317 | 
| Cow position: | chr6:20605708-20605916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 91, 36 | 
| Conread position: | 112-375 | 
| Cow position: | chr6:18968997-18968733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 26, 37 | 
| Conread position: | 113-327 | 
| Cow position: | chr6:29239718-29239933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 37, 101 | 
| Conread position: | 113-374 | 
| Cow position: | chr6:46865824-46865546 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 114-317 | 
| Cow position: | chr6:38207719-38207511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 85, 34 | 
| Conread position: | 114-317 | 
| Cow position: | chr6:38614600-38614796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 91, 106 | 
| Conread position: | 116-317 | 
| Cow position: | chr6:49002946-49002753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 89, 32 | 
| Conread position: | 116-372 | 
| Cow position: | chr6:45160513-45160254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 5.99994e-41 | 
| Alignm gaps (pig, cow): | 87, 33 | 
| Conread position: | 117-264 | 
| Cow position: | chr6:14289555-14289411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 87, 102 | 
| Conread position: | 117-317 | 
| Cow position: | chr6:9026296-9026498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 6e-30 | 
| Alignm gaps (pig, cow): | 87, 144 | 
| Conread position: | 117-317 | 
| Cow position: | chr6:38440961-38441156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 88, 134 | 
| Conread position: | 117-326 | 
| Cow position: | chr6:30826255-30826040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 86, 30 | 
| Conread position: | 117-326 | 
| Cow position: | chr6:67304581-67304795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 88, 31 | 
| Conread position: | 117-340 | 
| Cow position: | chr6:9452990-9452765 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 88, 35 | 
| Conread position: | 117-347 | 
| Cow position: | chr6:38895296-38895067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 117-362 | 
| Cow position: | chr6:53651820-53652075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 32, 6 | 
| Conread position: | 117-363 | 
| Cow position: | chr6:10635956-10636204 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 181, 31 | 
| Conread position: | 117-366 | 
| Cow position: | chr6:15301038-15300791 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 96, 85 | 
| Conread position: | 117-366 | 
| Cow position: | chr6:44194766-44194511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 88, 197 | 
| Conread position: | 118-266 | 
| Cow position: | chr6:10225896-10225754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 86, 30 | 
| Conread position: | 118-286 | 
| Cow position: | chr6:21184736-21184907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 86, 111 | 
| Conread position: | 118-317 | 
| Cow position: | chr6:1907319-1907521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 28, 166 | 
| Conread position: | 118-362 | 
| Cow position: | chr6:899504-899259 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 9e-34 | 
| Alignm gaps (pig, cow): | 86, 49 | 
| Conread position: | 118-363 | 
| Cow position: | chr6:37199769-37199492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 118-366 | 
| Cow position: | chr6:34031448-34031699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 173, 86 | 
| Conread position: | 119-352 | 
| Cow position: | chr6:7190338-7190098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 84, 131 | 
| Conread position: | 119-365 | 
| Cow position: | chr6:66874143-66874389 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 198, 81 | 
| Conread position: | 119-366 | 
| Cow position: | chr6:68049217-68049469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 85, 29 | 
| Conread position: | 120-308 | 
| Cow position: | chr6:15923215-15923028 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 84, 29 | 
| Conread position: | 121-348 | 
| Cow position: | chr6:30786365-30786139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 83, 97 | 
| Conread position: | 122-317 | 
| Cow position: | chr6:445095-445301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 81, 0 | 
| Conread position: | 122-327 | 
| Cow position: | chr6:66453585-66453792 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 9e-34 | 
| Alignm gaps (pig, cow): | 75, 98 | 
| Conread position: | 122-366 | 
| Cow position: | chr6:17997531-17997281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 8.00141e-43 | 
| Alignm gaps (pig, cow): | 83, 0 | 
| Conread position: | 123-327 | 
| Cow position: | chr6:48344113-48344325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 123-366 | 
| Cow position: | chr6:53460786-53460537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 81, 29 | 
| Conread position: | 123-368 | 
| Cow position: | chr6:6460327-6460583 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 81, 25 | 
| Conread position: | 123-376 | 
| Cow position: | chr6:8965875-8966133 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 81, 30 | 
| Conread position: | 124-308 | 
| Cow position: | chr6:59015776-59015587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 25, 117 | 
| Conread position: | 125-317 | 
| Cow position: | chr6:21110756-21110945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 24, 88 | 
| Conread position: | 126-326 | 
| Cow position: | chr6:59069840-59069634 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 77, 148 | 
| Conread position: | 126-356 | 
| Cow position: | chr6:57405336-57405097 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 70, 36 | 
| Conread position: | 126-366 | 
| Cow position: | chr6:24515405-24515160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 78, 144 | 
| Conread position: | 127-317 | 
| Cow position: | chr6:46400616-46400431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 76, 85 | 
| Conread position: | 127-327 | 
| Cow position: | chr6:23532452-23532647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 76, 120 | 
| Conread position: | 127-327 | 
| Cow position: | chr6:53139140-53138928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 8e-33 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 128-347 | 
| Cow position: | chr6:58732524-58732294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 75, 219 | 
| Conread position: | 129-293 | 
| Cow position: | chr6:31928064-31928221 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 20, 44 | 
| Conread position: | 130-317 | 
| Cow position: | chr6:54864874-54864690 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 74, 18 | 
| Conread position: | 130-366 | 
| Cow position: | chr6:7989621-7989378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 73, 32 | 
| Conread position: | 130-366 | 
| Cow position: | chr6:21231329-21231562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 9e-34 | 
| Alignm gaps (pig, cow): | 74, 5 | 
| Conread position: | 131-307 | 
| Cow position: | chr6:19695600-19695777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 74, 17 | 
| Conread position: | 131-317 | 
| Cow position: | chr6:61137158-61137354 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 9e-34 | 
| Alignm gaps (pig, cow): | 29, 17 | 
| Conread position: | 132-327 | 
| Cow position: | chr6:6098488-6098290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 72, 101 | 
| Conread position: | 132-327 | 
| Cow position: | chr6:38641292-38641487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 72, 87 | 
| Conread position: | 133-374 | 
| Cow position: | chr6:20157120-20157379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 54, 16 | 
| Conread position: | 134-296 | 
| Cow position: | chr6:89113-88945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 15, 131 | 
| Conread position: | 134-302 | 
| Cow position: | chr6:51463820-51463647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 70, 151 | 
| Conread position: | 135-317 | 
| Cow position: | chr6:48425524-48425341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 69, 81 | 
| Conread position: | 135-327 | 
| Cow position: | chr6:6400745-6400944 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 67, 116 | 
| Conread position: | 135-355 | 
| Cow position: | chr6:66131105-66131334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 125, 83 | 
| Conread position: | 136-316 | 
| Cow position: | chr6:52025857-52025673 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 136-366 | 
| Cow position: | chr6:28318207-28318437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 67, 96 | 
| Conread position: | 137-311 | 
| Cow position: | chr6:46245524-46245343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 66, 0 | 
| Conread position: | 139-311 | 
| Cow position: | chr6:37603324-37603495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 65, 155 | 
| Conread position: | 139-317 | 
| Cow position: | chr6:8788236-8788057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 65, 94 | 
| Conread position: | 139-357 | 
| Cow position: | chr6:33276840-33277057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 64, 53 | 
| Conread position: | 140-317 | 
| Cow position: | chr6:415897-416079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 64, 13 | 
| Conread position: | 140-368 | 
| Cow position: | chr6:48187779-48187543 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 6e-30 | 
| Alignm gaps (pig, cow): | 60, 83 | 
| Conread position: | 140-375 | 
| Cow position: | chr6:12092182-12091946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 64, 71 | 
| Conread position: | 142-308 | 
| Cow position: | chr6:33918047-33917880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 61, 123 | 
| Conread position: | 142-309 | 
| Cow position: | chr6:16191471-16191646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 67, 15 | 
| Conread position: | 142-314 | 
| Cow position: | chr6:52412659-52412838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 61, 7 | 
| Conread position: | 142-317 | 
| Cow position: | chr6:16423503-16423679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 62, 91 | 
| Conread position: | 142-366 | 
| Cow position: | chr6:32269066-32268846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 140, 32 | 
| Conread position: | 143-366 | 
| Cow position: | chr6:63720004-63720238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 132, 60 | 
| Conread position: | 144-327 | 
| Cow position: | chr6:57680629-57680437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 144-370 | 
| Cow position: | chr6:29484897-29485125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 60, 18 | 
| Conread position: | 145-317 | 
| Cow position: | chr6:53519816-53519643 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 58, 98 | 
| Conread position: | 150-317 | 
| Cow position: | chr6:47799110-47799272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 125, 50 | 
| Conread position: | 154-366 | 
| Cow position: | chr6:1703630-1703842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 49, 120 | 
| Conread position: | 156-362 | 
| Cow position: | chr6:47574723-47574940 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 156-366 | 
| Cow position: | chr6:5114228-5114011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 48, 8 | 
| Conread position: | 162-306 | 
| Cow position: | chr6:37783238-37783389 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 29, 65 | 
| Conread position: | 162-317 | 
| Cow position: | chr6:49604507-49604656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 43, 21 | 
| Conread position: | 163-317 | 
| Cow position: | chr6:9838987-9839150 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 164-327 | 
| Cow position: | chr6:35993403-35993577 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 164-372 | 
| Cow position: | chr6:60819341-60819557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 165-366 | 
| Cow position: | chr6:65264708-65264504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 39, 49 | 
| Conread position: | 166-356 | 
| Cow position: | chr6:47355652-47355841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 38, 95 | 
| Conread position: | 166-374 | 
| Cow position: | chr6:17334229-17334007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 169-327 | 
| Cow position: | chr6:11246595-11246756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 110, 100 | 
| Conread position: | 169-374 | 
| Cow position: | chr6:53453599-53453808 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 34, 148 | 
| Conread position: | 170-366 | 
| Cow position: | chr6:60739850-60740052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 33, 7 | 
| Conread position: | 171-366 | 
| Cow position: | chr6:47640604-47640394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 7e-21 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 173-360 | 
| Cow position: | chr6:19264665-19264467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 174-366 | 
| Cow position: | chr6:44984162-44984368 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 179-317 | 
| Cow position: | chr6:12543092-12542953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 179-317 | 
| Cow position: | chr6:32987157-32987018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 25, 54 | 
| Conread position: | 179-368 | 
| Cow position: | chr6:48112045-48112238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 25, 59 | 
| Conread position: | 184-372 | 
| Cow position: | chr6:57298866-57299059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 19, 35 | 
| Conread position: | 191-372 | 
| Cow position: | chr6:9219126-9219316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 12, 0 | 
| Conread position: | 192-360 | 
| Cow position: | chr6:16316160-16316334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 13, 41 | 
| Conread position: | 202-372 | 
| Cow position: | chr6:19996485-19996660 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 11, 28 | 
| Conread position: | 202-374 | 
| Cow position: | chr6:48988302-48988476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 62, 133 | 
| Conread position: | 206-372 | 
| Cow position: | chr6:17313603-17313779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 112, 0 | 
| Conread position: | 223-366 | 
| Cow position: | chr6:10225753-10225609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 148 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 52, 46 | 
| Conread position: | 227-374 | 
| Cow position: | chr6:16266609-16266770 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 38, 0 | 
Show alignments to all cow chromosomes.
