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Cow genome map

           
Conread name:
           
Lym1-jns19bF07.f
        

               
Conread position:
               
1-265
               

               
Cow position:
               
chrX:25283489-25283235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 87
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chrX:48370747-48371044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
11, 121
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:24200851-24201145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
103, 10
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chrX:45113288-45113578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
267, 100
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chrX:9252523-9252195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
10, 111
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chrX:14599187-14599500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 44
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chrX:20801428-20801742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
10, 102
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chrX:31260980-31260660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 115
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chrX:33855589-33855266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chrX:6543907-6544223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 116
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chrX:13648133-13647806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 114
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chrX:40269127-40269489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 121
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chrX:25035735-25035368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
10, 94
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chrX:17794646-17794997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 101
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chrX:4044207-4043838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
10, 155
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chrX:15147530-15147162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 14
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chrX:28847225-28846862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 96
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chrX:34663209-34662818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 163
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chrX:19228420-19228149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 8
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chrX:14908671-14908933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
203, 9
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chrX:11082960-11082670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chrX:4630037-4629736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
146, 21
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chrX:28866335-28866045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
272, 7
               

               
Conread position:
               
2-304
               

               
Cow position:
               
chrX:45430366-45430062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
10, 117
               

               
Conread position:
               
2-311
               

               
Cow position:
               
chrX:37072060-37072368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 9
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chrX:5017752-5017447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
202, 8
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chrX:10412333-10412019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 114
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chrX:25419508-25419190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
9, 107
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chrX:41198740-41199072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
106, 9
               

               
Conread position:
               
2-355
               

               
Cow position:
               
chrX:34532185-34532529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 9
               

               
Conread position:
               
2-361
               

               
Cow position:
               
chrX:5871967-5872337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
2-362
               

               
Cow position:
               
chrX:42994268-42994634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 9
               

               
Conread position:
               
2-366
               

               
Cow position:
               
chrX:917718-917342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 111
               

               
Conread position:
               
2-372
               

               
Cow position:
               
chrX:20697951-20697578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 101
               

               
Conread position:
               
2-372
               

               
Cow position:
               
chrX:29289230-29289609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 9
               

               
Conread position:
               
2-372
               

               
Cow position:
               
chrX:31250046-31250419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 8
               

               
Conread position:
               
2-372
               

               
Cow position:
               
chrX:44054458-44054833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 99
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chrX:161081-161380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
8, 119
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chrX:1978148-1978478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chrX:46532867-46532534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
8, 155
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chrX:12115694-12116026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 109
               

               
Conread position:
               
4-314
               

               
Cow position:
               
chrX:4123489-4123802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 118
               

               
Conread position:
               
5-317
               

               
Cow position:
               
chrX:3654262-3654575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
22, 96
               

               
Conread position:
               
10-264
               

               
Cow position:
               
chrX:160371-160119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
147, 89
               

               
Conread position:
               
10-264
               

               
Cow position:
               
chrX:35633092-35632838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
168, 91
               

               
Conread position:
               
10-307
               

               
Cow position:
               
chrX:31443159-31442864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 58
               

               
Conread position:
               
10-309
               

               
Cow position:
               
chrX:35388246-35387943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 112
               

               
Conread position:
               
10-316
               

               
Cow position:
               
chrX:13868358-13868669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 8
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chrX:18695260-18694957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 111
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chrX:20340230-20339922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 106
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chrX:27705254-27705554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 111
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chrX:32309762-32310070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
101, 141
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chrX:38439135-38439445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 36
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chrX:38963772-38964072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 93
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chrX:42247515-42247219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 91
               

               
Conread position:
               
10-317
               

               
Cow position:
               
chrX:42462087-42461777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 262
               

               
Conread position:
               
10-318
               

               
Cow position:
               
chrX:15485964-15485656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 91
               

               
Conread position:
               
10-327
               

               
Cow position:
               
chrX:11073544-11073213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
66, 251
               

               
Conread position:
               
10-327
               

               
Cow position:
               
chrX:34441786-34441471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 88
               

               
Conread position:
               
10-327
               

               
Cow position:
               
chrX:40827086-40826771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 106
               

               
Conread position:
               
10-334
               

               
Cow position:
               
chrX:7806039-7806362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
138, 69
               

               
Conread position:
               
10-342
               

               
Cow position:
               
chrX:40452552-40452213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 111
               

               
Conread position:
               
10-365
               

               
Cow position:
               
chrX:13177796-13177454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
194, 73
               

               
Conread position:
               
10-366
               

               
Cow position:
               
chrX:14974067-14973716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
169, 61
               

               
Conread position:
               
10-366
               

               
Cow position:
               
chrX:34502584-34502945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 91
               

               
Conread position:
               
10-367
               

               
Cow position:
               
chrX:14924662-14925027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 8
               

               
Conread position:
               
10-367
               

               
Cow position:
               
chrX:22812723-22813094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 104
               

               
Conread position:
               
10-372
               

               
Cow position:
               
chrX:8899685-8900058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 111
               

               
Conread position:
               
11-308
               

               
Cow position:
               
chrX:7695426-7695707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
262, 49
               

               
Conread position:
               
11-317
               

               
Cow position:
               
chrX:8796913-8797220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 48
               

               
Conread position:
               
11-374
               

               
Cow position:
               
chrX:21592948-21593320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 90
               

               
Conread position:
               
12-283
               

               
Cow position:
               
chrX:24809307-24809036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
191, 104
               

               
Conread position:
               
12-300
               

               
Cow position:
               
chrX:42855073-42855365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 91
               

               
Conread position:
               
16-306
               

               
Cow position:
               
chrX:25237845-25238130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
18-264
               

               
Cow position:
               
chrX:33827363-33827104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
18-294
               

               
Cow position:
               
chrX:45501817-45502095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
185, 103
               

               
Conread position:
               
18-308
               

               
Cow position:
               
chrX:41743582-41743870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 103
               

               
Conread position:
               
18-317
               

               
Cow position:
               
chrX:17497765-17498052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
18-317
               

               
Cow position:
               
chrX:36778074-36778379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 104
               

               
Conread position:
               
18-346
               

               
Cow position:
               
chrX:11844569-11844248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 83
               

               
Conread position:
               
18-351
               

               
Cow position:
               
chrX:41879261-41878931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 53
               

               
Conread position:
               
18-367
               

               
Cow position:
               
chrX:47481469-47481826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
182, 45
               

               
Conread position:
               
18-374
               

               
Cow position:
               
chrX:23564128-23563758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 103
               

               
Conread position:
               
19-317
               

               
Cow position:
               
chrX:45089107-45089416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 159
               

               
Conread position:
               
19-343
               

               
Cow position:
               
chrX:21665921-21665595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 60
               

               
Conread position:
               
20-317
               

               
Cow position:
               
chrX:32419860-32420187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
25-265
               

               
Cow position:
               
chrX:41049789-41050034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
72, 98
               

               
Conread position:
               
25-314
               

               
Cow position:
               
chrX:41403637-41403943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
25-314
               

               
Cow position:
               
chrX:41410185-41410491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
25-317
               

               
Cow position:
               
chrX:6234758-6234485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
179, 22
               

               
Conread position:
               
25-317
               

               
Cow position:
               
chrX:35681011-35681308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 184
               

               
Conread position:
               
25-317
               

               
Cow position:
               
chrX:43527179-43527477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 91
               

               
Conread position:
               
25-351
               

               
Cow position:
               
chrX:37843396-37843725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 96
               

               
Conread position:
               
25-366
               

               
Cow position:
               
chrX:37232087-37232432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 72
               

               
Conread position:
               
25-366
               

               
Cow position:
               
chrX:44396696-44397040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
173, 54
               

               
Conread position:
               
25-369
               

               
Cow position:
               
chrX:47967276-47967623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 88
               

               
Conread position:
               
25-372
               

               
Cow position:
               
chrX:12309712-12309355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 74
               

               
Conread position:
               
25-374
               

               
Cow position:
               
chrX:7508803-7509178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
83, 13
               

               
Conread position:
               
26-366
               

               
Cow position:
               
chrX:11581612-11581958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 50
               

               
Conread position:
               
29-366
               

               
Cow position:
               
chrX:42171616-42171269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 72
               

               
Conread position:
               
30-314
               

               
Cow position:
               
chrX:44731281-44731562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
174, 75
               

               
Conread position:
               
30-327
               

               
Cow position:
               
chrX:38227409-38227113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 91
               

               
Conread position:
               
30-366
               

               
Cow position:
               
chrX:878688-878355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
37, 72
               

               
Conread position:
               
33-317
               

               
Cow position:
               
chrX:40557992-40557714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
35-262
               

               
Cow position:
               
chrX:29049661-29049876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
169, 63
               

               
Conread position:
               
35-300
               

               
Cow position:
               
chrX:35268576-35268832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 86
               

               
Conread position:
               
35-304
               

               
Cow position:
               
chrX:34990727-34990989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
35-308
               

               
Cow position:
               
chrX:7645944-7646213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 86
               

               
Conread position:
               
35-317
               

               
Cow position:
               
chrX:1616365-1616077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 86
               

               
Conread position:
               
35-317
               

               
Cow position:
               
chrX:7571592-7571870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 79
               

               
Conread position:
               
35-317
               

               
Cow position:
               
chrX:12249487-12249769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 169
               

               
Conread position:
               
35-317
               

               
Cow position:
               
chrX:15545583-15545859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 86
               

               
Conread position:
               
35-317
               

               
Cow position:
               
chrX:24424706-24424421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
84, 41
               

               
Conread position:
               
35-317
               

               
Cow position:
               
chrX:25337863-25338152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 48
               

               
Conread position:
               
35-327
               

               
Cow position:
               
chrX:28845530-28845811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 114
               

               
Conread position:
               
35-347
               

               
Cow position:
               
chrX:13785692-13785360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
74, 187
               

               
Conread position:
               
35-352
               

               
Cow position:
               
chrX:5638482-5638162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 58
               

               
Conread position:
               
35-362
               

               
Cow position:
               
chrX:38007082-38006745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 86
               

               
Conread position:
               
35-366
               

               
Cow position:
               
chrX:5118797-5118477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
39, 67
               

               
Conread position:
               
35-366
               

               
Cow position:
               
chrX:11655765-11656106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 307
               

               
Conread position:
               
35-366
               

               
Cow position:
               
chrX:31436166-31436499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 79
               

               
Conread position:
               
35-372
               

               
Cow position:
               
chrX:15139862-15139516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 44
               

               
Conread position:
               
35-372
               

               
Cow position:
               
chrX:40481185-40480838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 9
               

               
Conread position:
               
35-380
               

               
Cow position:
               
chrX:20582716-20583048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 81
               

               
Conread position:
               
36-294
               

               
Cow position:
               
chrX:26625998-26625726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
88, 238
               

               
Conread position:
               
36-366
               

               
Cow position:
               
chrX:35223989-35224321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 80
               

               
Conread position:
               
37-264
               

               
Cow position:
               
chrX:26619673-26619447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
166, 12
               

               
Conread position:
               
37-265
               

               
Cow position:
               
chrX:3161328-3161099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
116, 79
               

               
Conread position:
               
37-308
               

               
Cow position:
               
chrX:30162685-30162955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
166, 84
               

               
Conread position:
               
37-316
               

               
Cow position:
               
chrX:7350990-7351267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 64
               

               
Conread position:
               
37-346
               

               
Cow position:
               
chrX:9161276-9161586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
166, 84
               

               
Conread position:
               
37-346
               

               
Cow position:
               
chrX:11718092-11717784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 84
               

               
Conread position:
               
41-262
               

               
Cow position:
               
chrX:25618226-25617996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
41-302
               

               
Cow position:
               
chrX:23061146-23061398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
234, 80
               

               
Conread position:
               
41-317
               

               
Cow position:
               
chrX:20709767-20710042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
156, 55
               

               
Conread position:
               
41-317
               

               
Cow position:
               
chrX:34401690-34401965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 30
               

               
Conread position:
               
41-373
               

               
Cow position:
               
chrX:47873649-47873304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
162, 75
               

               
Conread position:
               
42-264
               

               
Cow position:
               
chrX:30919701-30919474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
42-264
               

               
Cow position:
               
chrX:38794418-38794643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
42-345
               

               
Cow position:
               
chrX:14884271-14883958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
43-305
               

               
Cow position:
               
chrX:11314084-11313828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
149, 66
               

               
Conread position:
               
43-372
               

               
Cow position:
               
chrX:33466311-33466639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 66
               

               
Conread position:
               
44-317
               

               
Cow position:
               
chrX:10831817-10831526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 77
               

               
Conread position:
               
50-317
               

               
Cow position:
               
chrX:1176273-1176012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
153, 64
               

               
Conread position:
               
50-369
               

               
Cow position:
               
chrX:35273045-35273379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
92, 71
               

               
Conread position:
               
51-366
               

               
Cow position:
               
chrX:19015144-19015462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 65
               

               
Conread position:
               
53-263
               

               
Cow position:
               
chrX:6607113-6607336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 104
               

               
Conread position:
               
56-356
               

               
Cow position:
               
chrX:22482982-22482682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 65
               

               
Conread position:
               
56-374
               

               
Cow position:
               
chrX:30133617-30133285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
149, 65
               

               
Conread position:
               
57-264
               

               
Cow position:
               
chrX:37102333-37102141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
147, 64
               

               
Conread position:
               
60-350
               

               
Cow position:
               
chrX:44835105-44834809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
145, 61
               

               
Conread position:
               
62-373
               

               
Cow position:
               
chrX:48195328-48195003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 62
               

               
Conread position:
               
63-369
               

               
Cow position:
               
chrX:46723027-46722706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 58
               

               
Conread position:
               
66-374
               

               
Cow position:
               
chrX:2467597-2467917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 48
               

               
Conread position:
               
67-265
               

               
Cow position:
               
chrX:16531718-16531912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
136, 6
               

               
Conread position:
               
68-366
               

               
Cow position:
               
chrX:42874697-42875008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 53
               

               
Conread position:
               
70-327
               

               
Cow position:
               
chrX:8925427-8925681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
71-317
               

               
Cow position:
               
chrX:9997609-9997368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
71-346
               

               
Cow position:
               
chrX:8730801-8731087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
134, 50
               

               
Conread position:
               
72-316
               

               
Cow position:
               
chrX:35413353-35413587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 132
               

               
Conread position:
               
72-373
               

               
Cow position:
               
chrX:30921908-30922203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
79-366
               

               
Cow position:
               
chrX:17725708-17726000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
125, 41
               

               
Conread position:
               
81-250
               

               
Cow position:
               
chrX:5856591-5856423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
122, 40
               

               
Conread position:
               
81-317
               

               
Cow position:
               
chrX:17541696-17541925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
122, 40
               

               
Conread position:
               
81-369
               

               
Cow position:
               
chrX:10095758-10096060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 40
               

               
Conread position:
               
81-373
               

               
Cow position:
               
chrX:45404102-45403793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
122, 40
               

               
Conread position:
               
83-346
               

               
Cow position:
               
chrX:40647712-40647988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 38
               

               
Conread position:
               
83-350
               

               
Cow position:
               
chrX:488224-488492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
122, 28
               

               
Conread position:
               
90-317
               

               
Cow position:
               
chrX:20151591-20151817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
114, 27
               

               
Conread position:
               
91-264
               

               
Cow position:
               
chrX:30763677-30763509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
114, 13
               

               
Conread position:
               
91-327
               

               
Cow position:
               
chrX:32020380-32020139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 30
               

               
Conread position:
               
93-262
               

               
Cow position:
               
chrX:29925832-29925668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 15
               

               
Conread position:
               
93-317
               

               
Cow position:
               
chrX:7496989-7497207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
107, 28
               

               
Conread position:
               
96-317
               

               
Cow position:
               
chrX:9416949-9416726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
98-308
               

               
Cow position:
               
chrX:678819-678608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
106, 23
               

               
Conread position:
               
98-366
               

               
Cow position:
               
chrX:23497914-23497642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 23
               

               
Conread position:
               
99-317
               

               
Cow position:
               
chrX:24366079-24365858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
104, 22
               

               
Conread position:
               
99-327
               

               
Cow position:
               
chrX:25816146-25815928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
101-327
               

               
Cow position:
               
chrX:47054777-47054547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 5
               

               
Conread position:
               
102-283
               

               
Cow position:
               
chrX:48536913-48536729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
102, 15
               

               
Conread position:
               
102-362
               

               
Cow position:
               
chrX:27432166-27431897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
102, 19
               

               
Conread position:
               
107-304
               

               
Cow position:
               
chrX:28111262-28111461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
96, 153
               

               
Conread position:
               
107-317
               

               
Cow position:
               
chrX:17631048-17630839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
107-317
               

               
Cow position:
               
chrX:42282190-42282395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
14, 29
               

               
Conread position:
               
107-327
               

               
Cow position:
               
chrX:28878404-28878189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 14
               

               
Conread position:
               
107-327
               

               
Cow position:
               
chrX:35284375-35284600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
107-327
               

               
Cow position:
               
chrX:40035693-40035463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
108-302
               

               
Cow position:
               
chrX:6639881-6640082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
108-317
               

               
Cow position:
               
chrX:39558591-39558383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 129
               

               
Conread position:
               
108-318
               

               
Cow position:
               
chrX:30833079-30832881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
96, 13
               

               
Conread position:
               
108-351
               

               
Cow position:
               
chrX:23514261-23514009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 60
               

               
Conread position:
               
108-375
               

               
Cow position:
               
chrX:27772199-27771931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
95, 40
               

               
Conread position:
               
109-308
               

               
Cow position:
               
chrX:8517634-8517827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
94, 68
               

               
Conread position:
               
109-366
               

               
Cow position:
               
chrX:26876123-26875856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
109-366
               

               
Cow position:
               
chrX:27394256-27394001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
96, 110
               

               
Conread position:
               
109-372
               

               
Cow position:
               
chrX:21672309-21672585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
110-317
               

               
Cow position:
               
chrX:17662838-17662626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
94, 155
               

               
Conread position:
               
110-361
               

               
Cow position:
               
chrX:22074559-22074815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
94, 201
               

               
Conread position:
               
112-308
               

               
Cow position:
               
chrX:10302097-10302295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
112-317
               

               
Cow position:
               
chrX:7721743-7721956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
5, 156
               

               
Conread position:
               
112-346
               

               
Cow position:
               
chrX:27680164-27680397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
92, 35
               

               
Conread position:
               
113-317
               

               
Cow position:
               
chrX:41167202-41166997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
91, 35
               

               
Conread position:
               
113-362
               

               
Cow position:
               
chrX:11939162-11938914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
91, 45
               

               
Conread position:
               
115-327
               

               
Cow position:
               
chrX:37910217-37910422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
161, 19
               

               
Conread position:
               
116-351
               

               
Cow position:
               
chrX:40116190-40116423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
88, 32
               

               
Conread position:
               
116-374
               

               
Cow position:
               
chrX:15814862-15815117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
159, 92
               

               
Conread position:
               
117-305
               

               
Cow position:
               
chrX:25571230-25571041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
26, 145
               

               
Conread position:
               
117-308
               

               
Cow position:
               
chrX:9855066-9855263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
117-308
               

               
Cow position:
               
chrX:9953907-9954104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
117-308
               

               
Cow position:
               
chrX:39938753-39938565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
8, 24
               

               
Conread position:
               
117-309
               

               
Cow position:
               
chrX:2206778-2206591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
87, 113
               

               
Conread position:
               
117-317
               

               
Cow position:
               
chrX:38549214-38549414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
87, 155
               

               
Conread position:
               
117-317
               

               
Cow position:
               
chrX:43049108-43049316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
117-317
               

               
Cow position:
               
chrX:44961513-44961716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
86, 124
               

               
Conread position:
               
117-327
               

               
Cow position:
               
chrX:21004450-21004661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
117-339
               

               
Cow position:
               
chrX:42499263-42499041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
87, 156
               

               
Conread position:
               
117-351
               

               
Cow position:
               
chrX:33493541-33493781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
117-356
               

               
Cow position:
               
chrX:41884652-41884397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
117-366
               

               
Cow position:
               
chrX:619242-618977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
117-372
               

               
Cow position:
               
chrX:38935047-38935312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
86, 173
               

               
Conread position:
               
117-374
               

               
Cow position:
               
chrX:34543553-34543817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 69
               

               
Conread position:
               
118-356
               

               
Cow position:
               
chrX:9201314-9201563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
85, 31
               

               
Conread position:
               
119-300
               

               
Cow position:
               
chrX:10107207-10107023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
119-317
               

               
Cow position:
               
chrX:6278738-6278533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
119-317
               

               
Cow position:
               
chrX:9635413-9635218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
85, 142
               

               
Conread position:
               
119-317
               

               
Cow position:
               
chrX:19930424-19930618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
84, 30
               

               
Conread position:
               
119-373
               

               
Cow position:
               
chrX:48010362-48010636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
119-374
               

               
Cow position:
               
chrX:30963104-30962844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
86, 98
               

               
Conread position:
               
120-343
               

               
Cow position:
               
chrX:2648581-2648357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
120-366
               

               
Cow position:
               
chrX:12980060-12979809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
84, 11
               

               
Conread position:
               
121-327
               

               
Cow position:
               
chrX:25411610-25411821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
121-374
               

               
Cow position:
               
chrX:21642708-21642449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
123-293
               

               
Cow position:
               
chrX:18812030-18812196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
123-300
               

               
Cow position:
               
chrX:1728645-1728472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
123-305
               

               
Cow position:
               
chrX:13265848-13265668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
82, 113
               

               
Conread position:
               
123-309
               

               
Cow position:
               
chrX:7513288-7513473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
81, 34
               

               
Conread position:
               
123-317
               

               
Cow position:
               
chrX:37048809-37048610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
23, 151
               

               
Conread position:
               
123-317
               

               
Cow position:
               
chrX:44053030-44053225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
68, 138
               

               
Conread position:
               
123-366
               

               
Cow position:
               
chrX:35542663-35542920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
124-317
               

               
Cow position:
               
chrX:48684450-48684258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 95
               

               
Conread position:
               
125-304
               

               
Cow position:
               
chrX:4942976-4942800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
125-366
               

               
Cow position:
               
chrX:13382098-13382356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
126-304
               

               
Cow position:
               
chrX:4750523-4750350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
126-309
               

               
Cow position:
               
chrX:46430087-46429899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
5, 149
               

               
Conread position:
               
126-345
               

               
Cow position:
               
chrX:29509669-29509445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
77, 210
               

               
Conread position:
               
127-308
               

               
Cow position:
               
chrX:16324187-16324006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
127-317
               

               
Cow position:
               
chrX:11589816-11589620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
35, 24
               

               
Conread position:
               
127-317
               

               
Cow position:
               
chrX:17042466-17042660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
77, 144
               

               
Conread position:
               
128-317
               

               
Cow position:
               
chrX:6488363-6488547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
144, 76
               

               
Conread position:
               
128-317
               

               
Cow position:
               
chrX:16541899-16541704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
75, 20
               

               
Conread position:
               
128-318
               

               
Cow position:
               
chrX:6265809-6265631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 96
               

               
Conread position:
               
128-367
               

               
Cow position:
               
chrX:1514624-1514386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
76, 91
               

               
Conread position:
               
129-317
               

               
Cow position:
               
chrX:46073044-46072853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
20, 104
               

               
Conread position:
               
129-345
               

               
Cow position:
               
chrX:1503117-1503335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
74, 19
               

               
Conread position:
               
130-262
               

               
Cow position:
               
chrX:23091660-23091793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
130-317
               

               
Cow position:
               
chrX:11633457-11633647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
130-382
               

               
Cow position:
               
chrX:45015364-45015616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
19, 74
               

               
Conread position:
               
131-317
               

               
Cow position:
               
chrX:29602053-29601863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
132-308
               

               
Cow position:
               
chrX:20792037-20791860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 154
               

               
Conread position:
               
134-327
               

               
Cow position:
               
chrX:29120841-29121026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
139, 14
               

               
Conread position:
               
134-362
               

               
Cow position:
               
chrX:37781330-37781088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 14
               

               
Conread position:
               
136-308
               

               
Cow position:
               
chrX:10123562-10123385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
137-333
               

               
Cow position:
               
chrX:46315593-46315389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
137-356
               

               
Cow position:
               
chrX:34411625-34411851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
16, 121
               

               
Conread position:
               
139-382
               

               
Cow position:
               
chrX:27174782-27175031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
14, 198
               

               
Conread position:
               
140-317
               

               
Cow position:
               
chrX:29542430-29542252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
64, 131
               

               
Conread position:
               
140-368
               

               
Cow position:
               
chrX:841947-842184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
63, 79
               

               
Conread position:
               
140-372
               

               
Cow position:
               
chrX:3579735-3579975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
140-373
               

               
Cow position:
               
chrX:47301115-47300871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
63, 150
               

               
Conread position:
               
142-327
               

               
Cow position:
               
chrX:40809476-40809669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
143-356
               

               
Cow position:
               
chrX:38852988-38853213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
144-318
               

               
Cow position:
               
chrX:10252389-10252213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
145-317
               

               
Cow position:
               
chrX:46587611-46587787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
145-374
               

               
Cow position:
               
chrX:16996300-16996525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
145-374
               

               
Cow position:
               
chrX:33000697-33000938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
58, 88
               

               
Conread position:
               
147-366
               

               
Cow position:
               
chrX:17908488-17908263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
57, 69
               

               
Conread position:
               
148-372
               

               
Cow position:
               
chrX:29545083-29544846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 54
               

               
Conread position:
               
150-351
               

               
Cow position:
               
chrX:1499468-1499671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
54, 69
               

               
Conread position:
               
152-366
               

               
Cow position:
               
chrX:4091448-4091665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 67
               

               
Conread position:
               
153-317
               

               
Cow position:
               
chrX:12405575-12405417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
109, 39
               

               
Conread position:
               
154-366
               

               
Cow position:
               
chrX:36961438-36961666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
156-373
               

               
Cow position:
               
chrX:47484467-47484232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
159-317
               

               
Cow position:
               
chrX:45874806-45874966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
162-304
               

               
Cow position:
               
chrX:31311836-31311983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
162-306
               

               
Cow position:
               
chrX:24149450-24149597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
162-317
               

               
Cow position:
               
chrX:23785464-23785630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
162-317
               

               
Cow position:
               
chrX:44657154-44656994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
162-327
               

               
Cow position:
               
chrX:1505523-1505689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 24
               

               
Conread position:
               
162-327
               

               
Cow position:
               
chrX:43730404-43730242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 70
               

               
Conread position:
               
163-317
               

               
Cow position:
               
chrX:42235722-42235561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 113
               

               
Conread position:
               
165-317
               

               
Cow position:
               
chrX:31256681-31256833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
169-367
               

               
Cow position:
               
chrX:32820847-32821055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 11
               

               
Conread position:
               
170-317
               

               
Cow position:
               
chrX:7336645-7336796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
179-366
               

               
Cow position:
               
chrX:22387420-22387221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 178
               

               
Conread position:
               
180-317
               

               
Cow position:
               
chrX:27145452-27145590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
180-366
               

               
Cow position:
               
chrX:34792482-34792286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 61
               

               
Conread position:
               
182-311
               

               
Cow position:
               
chrX:41271377-41271246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
187-374
               

               
Cow position:
               
chrX:27227962-27228159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 14
               

               
Conread position:
               
202-366
               

               
Cow position:
               
chrX:29680408-29680236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
205-346
               

               
Cow position:
               
chrX:29723596-29723738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 130
               

               
Conread position:
               
206-366
               

               
Cow position:
               
chrX:11085201-11085038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
206-372
               

               
Cow position:
               
chrX:25207987-25207824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 128
               

               
Conread position:
               
207-364
               

               
Cow position:
               
chrX:11614556-11614721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
211-317
               

               
Cow position:
               
chrX:616401-616295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
226-372
               

               
Cow position:
               
chrX:27946183-27946023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
232-375
               

               
Cow position:
               
chrX:5679684-5679535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               
Show alignments to all cow chromosomes.