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Cow genome map

           
Conread name:
           
Lym1-jns21_C12.f
        

               
Conread position:
               
1-193
               

               
Cow position:
               
chr17:15728705-15728518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr17:23563575-23563904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
155, 71
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr17:3577764-3577422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 55
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr17:7810510-7810859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
64, 229
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr17:31701672-31701311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
41, 213
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr17:43717103-43717462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
343, 28
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chr17:29356006-29356369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
186, 64
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chr17:36275573-36275207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
2-231
               

               
Cow position:
               
chr17:40276972-40276746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
83, 28
               

               
Conread position:
               
2-313
               

               
Cow position:
               
chr17:1469602-1469299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
226, 62
               

               
Conread position:
               
2-381
               

               
Cow position:
               
chr17:33288422-33288804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 88
               

               
Conread position:
               
3-143
               

               
Cow position:
               
chr17:8809273-8809410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chr17:9260376-9260535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr17:30977251-30977092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr17:7711671-7711490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
70, 94
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chr17:26225263-26225079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr17:10016512-10016329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr17:24895312-24895123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
83, 26
               

               
Conread position:
               
3-192
               

               
Cow position:
               
chr17:12215018-12215212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 105
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chr17:21677126-21676934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr17:21718762-21718958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr17:30501578-30501783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
131, 24
               

               
Conread position:
               
3-206
               

               
Cow position:
               
chr17:31563449-31563650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr17:946591-946387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr17:7959414-7959198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
77, 94
               

               
Conread position:
               
3-229
               

               
Cow position:
               
chr17:17035181-17034958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr17:27440412-27440180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
34, 94
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr17:37340796-37341036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr17:43315055-43315285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr17:16868040-16868282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
219, 85
               

               
Conread position:
               
3-252
               

               
Cow position:
               
chr17:9932076-9932319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
220, 62
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr17:25473046-25473300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
219, 86
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr17:29995200-29995465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr17:33164585-33164844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
218, 85
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr17:3389069-3388792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
62, 166
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr17:32332857-32333125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
76, 29
               

               
Conread position:
               
3-277
               

               
Cow position:
               
chr17:26448778-26448501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 110
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr17:25800649-25800925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 87
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr17:35051855-35051563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
68, 237
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chr17:33154923-33155200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
218, 70
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr17:21039791-21039518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 94
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr17:37815955-37816236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 27
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr17:22051356-22051644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
83, 96
               

               
Conread position:
               
3-295
               

               
Cow position:
               
chr17:25126579-25126294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
227, 69
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr17:1025599-1025885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 55
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr17:21806214-21806514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
74, 277
               

               
Conread position:
               
3-300
               

               
Cow position:
               
chr17:34790830-34791131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 85
               

               
Conread position:
               
3-303
               

               
Cow position:
               
chr17:40639182-40638882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 30
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr17:33793387-33793093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
223, 32
               

               
Conread position:
               
3-309
               

               
Cow position:
               
chr17:3153333-3153645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
61, 140
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr17:21292803-21293117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
3-313
               

               
Cow position:
               
chr17:17193725-17193416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
61, 100
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chr17:9824902-9824590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 93
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr17:11912270-11912596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
219, 93
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr17:35573982-35573663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
18, 47
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr17:40250645-40250326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
225, 73
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr17:25616480-25616157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
3-342
               

               
Cow position:
               
chr17:11831883-11832226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
219, 76
               

               
Conread position:
               
3-350
               

               
Cow position:
               
chr17:18201996-18201644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
67, 115
               

               
Conread position:
               
3-350
               

               
Cow position:
               
chr17:29084402-29084074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
339, 29
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chr17:1040963-1040629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 55
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chr17:1562556-1562887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
3-353
               

               
Cow position:
               
chr17:31856907-31856545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
86, 105
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr17:8836716-8837068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr17:27429791-27429463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
209, 50
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr17:30728742-30728402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr17:40772065-40771716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 98
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr17:6423989-6423641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 66
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr17:13922717-13922359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 69
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr17:15102654-15103004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 252
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr17:24587858-24587502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 86
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr17:26818237-26818569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
225, 86
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr17:32418882-32419234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 85
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr17:11296874-11296514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
218, 66
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr17:21003596-21003952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 89
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr17:24786790-24787142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 87
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr17:5768129-5767788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 27
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr17:20884760-20884397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr17:20932564-20932203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
74, 26
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr17:21738630-21739006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr17:29292155-29292493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
331, 69
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chr17:24883335-24883693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 98
               

               
Conread position:
               
3-362
               

               
Cow position:
               
chr17:31480795-31481163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
93, 76
               

               
Conread position:
               
3-365
               

               
Cow position:
               
chr17:9056464-9056830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
78, 111
               

               
Conread position:
               
3-366
               

               
Cow position:
               
chr17:28468359-28468006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
3-378
               

               
Cow position:
               
chr17:40741889-40741500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
62, 108
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr17:4105757-4106134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr17:4121492-4121870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
76, 27
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr17:25901443-25901047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chr17:4786246-4786645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 120
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chr17:29714979-29715335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
235, 30
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:908974-908596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 94
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:11215658-11216033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
70, 104
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:12946124-12946515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
207, 69
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:13243819-13244181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
291, 18
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:15684738-15684355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
175, 30
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:17059653-17059289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 60
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:17682679-17683048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
252, 68
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:20022279-20022667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 0
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:20090394-20090771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
70, 253
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:20157843-20157465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 284
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:20780760-20780360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:20992803-20993189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 76
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:22775605-22775233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 48
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:24824481-24824102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 26
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:25128119-25128500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 86
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:25612322-25611943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 76
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:31037142-31037530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:32989708-32989342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 24
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:32993392-32993764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 24
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:33933513-33933887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 85
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr17:40332014-40331615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 170
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chr17:5143937-5144318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
165, 62
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr17:32349298-32348925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 76
               

               
Conread position:
               
4-274
               

               
Cow position:
               
chr17:17044101-17044372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
215, 61
               

               
Conread position:
               
4-381
               

               
Cow position:
               
chr17:17222578-17222192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
70, 111
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr17:25511475-25511213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
217, 91
               

               
Conread position:
               
5-331
               

               
Cow position:
               
chr17:36864856-36864535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
218, 74
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr17:7132191-7132571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-361
               

               
Cow position:
               
chr17:27058316-27058679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
67, 102
               

               
Conread position:
               
5-367
               

               
Cow position:
               
chr17:9854215-9853859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
68, 155
               

               
Conread position:
               
5-381
               

               
Cow position:
               
chr17:1063401-1063039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
174, 28
               

               
Conread position:
               
5-381
               

               
Cow position:
               
chr17:22564411-22564033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
166, 40
               

               
Conread position:
               
6-207
               

               
Cow position:
               
chr17:33653461-33653659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 58
               

               
Conread position:
               
6-231
               

               
Cow position:
               
chr17:42150620-42150399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
6-235
               

               
Cow position:
               
chr17:21471955-21472178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
222, 83
               

               
Conread position:
               
6-254
               

               
Cow position:
               
chr17:24163266-24163018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
51, 74
               

               
Conread position:
               
6-265
               

               
Cow position:
               
chr17:8815419-8815160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
214, 78
               

               
Conread position:
               
6-267
               

               
Cow position:
               
chr17:40412811-40412554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
6-294
               

               
Cow position:
               
chr17:5372300-5372588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
208, 83
               

               
Conread position:
               
6-301
               

               
Cow position:
               
chr17:24751144-24750851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
83, 24
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chr17:4299710-4300038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
139, 83
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chr17:6318636-6318977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 84
               

               
Conread position:
               
6-360
               

               
Cow position:
               
chr17:21972895-21973258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
6-360
               

               
Cow position:
               
chr17:30713578-30713224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 116
               

               
Conread position:
               
6-361
               

               
Cow position:
               
chr17:24928710-24928353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
72, 222
               

               
Conread position:
               
6-361
               

               
Cow position:
               
chr17:32138184-32138540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 227
               

               
Conread position:
               
6-379
               

               
Cow position:
               
chr17:1634261-1634633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 83
               

               
Conread position:
               
6-380
               

               
Cow position:
               
chr17:24974175-24973802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 66
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr17:5000369-5000726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 83
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr17:7143089-7142714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
224, 73
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr17:12447170-12447549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
7-180
               

               
Cow position:
               
chr17:20881584-20881751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
7-312
               

               
Cow position:
               
chr17:29026306-29025991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
72, 107
               

               
Conread position:
               
7-354
               

               
Cow position:
               
chr17:12306169-12306511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
115, 81
               

               
Conread position:
               
7-355
               

               
Cow position:
               
chr17:14004055-14003701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 42
               

               
Conread position:
               
7-381
               

               
Cow position:
               
chr17:12536243-12536618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 65
               

               
Conread position:
               
8-257
               

               
Cow position:
               
chr17:26574992-26575253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
8-355
               

               
Cow position:
               
chr17:23100992-23101327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
318, 53
               

               
Conread position:
               
8-360
               

               
Cow position:
               
chr17:5422848-5423194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 61
               

               
Conread position:
               
8-367
               

               
Cow position:
               
chr17:5514987-5514628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
64, 109
               

               
Conread position:
               
8-379
               

               
Cow position:
               
chr17:30529317-30529685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
8-382
               

               
Cow position:
               
chr17:28284806-28285177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 21
               

               
Conread position:
               
9-167
               

               
Cow position:
               
chr17:19544003-19544161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
136, 115
               

               
Conread position:
               
9-181
               

               
Cow position:
               
chr17:25122019-25122187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
9-185
               

               
Cow position:
               
chr17:22081294-22081463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
9-221
               

               
Cow position:
               
chr17:15355163-15354948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 117
               

               
Conread position:
               
9-227
               

               
Cow position:
               
chr17:10414722-10414507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
197, 62
               

               
Conread position:
               
9-237
               

               
Cow position:
               
chr17:26637627-26637858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
59, 72
               

               
Conread position:
               
9-268
               

               
Cow position:
               
chr17:9950427-9950697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 96
               

               
Conread position:
               
9-281
               

               
Cow position:
               
chr17:18934485-18934211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
208, 18
               

               
Conread position:
               
9-302
               

               
Cow position:
               
chr17:39606651-39606362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
202, 23
               

               
Conread position:
               
9-305
               

               
Cow position:
               
chr17:36814594-36814290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
66, 110
               

               
Conread position:
               
9-307
               

               
Cow position:
               
chr17:12510756-12511047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
225, 32
               

               
Conread position:
               
9-314
               

               
Cow position:
               
chr17:25709944-25709626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
9-323
               

               
Cow position:
               
chr17:25342511-25342828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
64, 92
               

               
Conread position:
               
9-333
               

               
Cow position:
               
chr17:25513889-25514221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 204
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr17:3354098-3353782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
208, 33
               

               
Conread position:
               
9-349
               

               
Cow position:
               
chr17:10458705-10459051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
49, 39
               

               
Conread position:
               
9-354
               

               
Cow position:
               
chr17:16446197-16446551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 67
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chr17:20032679-20033032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
74, 112
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chr17:36454549-36454886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 84
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:1256269-1256625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
69, 106
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:10447142-10446795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
74, 203
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:10528501-10528862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
69, 92
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:11397896-11397545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 91
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:11618816-11618459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
62, 109
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:11664348-11664713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 101
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:11839952-11839576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
63, 90
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:18490762-18490411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
111, 55
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:22032459-22032815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
43, 223
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:26233598-26233951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
68, 214
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:32278675-32279028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 109
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:32280897-32280544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
66, 109
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr17:40673602-40673261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
69, 109
               

               
Conread position:
               
9-361
               

               
Cow position:
               
chr17:11036142-11035797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
69, 214
               

               
Conread position:
               
9-361
               

               
Cow position:
               
chr17:26000348-25999990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 91
               

               
Conread position:
               
9-367
               

               
Cow position:
               
chr17:26231194-26230812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
70, 117
               

               
Conread position:
               
9-367
               

               
Cow position:
               
chr17:32027218-32027589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
68, 94
               

               
Conread position:
               
9-368
               

               
Cow position:
               
chr17:14033412-14033772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 83
               

               
Conread position:
               
9-373
               

               
Cow position:
               
chr17:5731147-5730782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 253
               

               
Conread position:
               
9-379
               

               
Cow position:
               
chr17:18720223-18720596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
201, 40
               

               
Conread position:
               
9-379
               

               
Cow position:
               
chr17:25118116-25117742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
107, 219
               

               
Conread position:
               
9-380
               

               
Cow position:
               
chr17:25875624-25875263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 106
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:3467980-3467619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 56
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:5280421-5280793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
87, 70
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:5898295-5898675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:6156262-6155891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
66, 32
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:11101589-11101944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
347, 70
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:12289181-12289565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:15664905-15664519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
61, 93
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:18146419-18146032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:20071874-20072225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
75, 20
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:24559522-24559149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
66, 106
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:33053083-33052713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
79, 34
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:36791353-36790989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
76, 20
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr17:38615192-38614806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
10-184
               

               
Cow position:
               
chr17:24767060-24767234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
10-192
               

               
Cow position:
               
chr17:39964106-39963923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 84
               

               
Conread position:
               
10-300
               

               
Cow position:
               
chr17:26789643-26789361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
10-312
               

               
Cow position:
               
chr17:8597881-8598182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
69, 209
               

               
Conread position:
               
10-315
               

               
Cow position:
               
chr17:10431736-10432056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
10-350
               

               
Cow position:
               
chr17:24004601-24004268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
56, 90
               

               
Conread position:
               
10-354
               

               
Cow position:
               
chr17:32471560-32471909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 55
               

               
Conread position:
               
10-355
               

               
Cow position:
               
chr17:12929300-12929659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 30
               

               
Conread position:
               
10-360
               

               
Cow position:
               
chr17:11362404-11362056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 103
               

               
Conread position:
               
10-361
               

               
Cow position:
               
chr17:24773904-24773557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
161, 69
               

               
Conread position:
               
10-381
               

               
Cow position:
               
chr17:1035366-1035751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
64, 102
               

               
Conread position:
               
11-188
               

               
Cow position:
               
chr17:44234472-44234300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
11-280
               

               
Cow position:
               
chr17:33067340-33067605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
53, 96
               

               
Conread position:
               
11-337
               

               
Cow position:
               
chr17:21325571-21325231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 253
               

               
Conread position:
               
11-354
               

               
Cow position:
               
chr17:44146746-44147091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
11-361
               

               
Cow position:
               
chr17:27183715-27184066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
63, 34
               

               
Conread position:
               
11-381
               

               
Cow position:
               
chr17:12325543-12325896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 52
               

               
Conread position:
               
11-381
               

               
Cow position:
               
chr17:21959456-21959833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
11-381
               

               
Cow position:
               
chr17:27795882-27795497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
59, 106
               

               
Conread position:
               
11-381
               

               
Cow position:
               
chr17:36330740-36331117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
11-382
               

               
Cow position:
               
chr17:27274795-27274415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
103, 25
               

               
Conread position:
               
12-232
               

               
Cow position:
               
chr17:24862681-24862464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
12-354
               

               
Cow position:
               
chr17:1114124-1113766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 222
               

               
Conread position:
               
12-360
               

               
Cow position:
               
chr17:6329338-6328987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
216, 67
               

               
Conread position:
               
12-367
               

               
Cow position:
               
chr17:39771628-39771264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
102, 67
               

               
Conread position:
               
12-371
               

               
Cow position:
               
chr17:17180271-17179892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
58, 31
               

               
Conread position:
               
13-257
               

               
Cow position:
               
chr17:12959327-12959083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
22, 60
               

               
Conread position:
               
13-259
               

               
Cow position:
               
chr17:45296631-45296391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
210, 21
               

               
Conread position:
               
13-307
               

               
Cow position:
               
chr17:11994795-11995103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
13-380
               

               
Cow position:
               
chr17:21114730-21115097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 76
               

               
Conread position:
               
13-381
               

               
Cow position:
               
chr17:20848749-20848380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
77, 163
               

               
Conread position:
               
14-348
               

               
Cow position:
               
chr17:11215009-11215342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
14-354
               

               
Cow position:
               
chr17:25594464-25594822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 80
               

               
Conread position:
               
16-260
               

               
Cow position:
               
chr17:41429366-41429616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
17-381
               

               
Cow position:
               
chr17:23063943-23063562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
61, 146
               

               
Conread position:
               
19-360
               

               
Cow position:
               
chr17:16371477-16371130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
41, 98
               

               
Conread position:
               
21-379
               

               
Cow position:
               
chr17:18473380-18473028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 83
               

               
Conread position:
               
25-312
               

               
Cow position:
               
chr17:3371835-3371557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
59, 132
               

               
Conread position:
               
34-187
               

               
Cow position:
               
chr17:25348571-25348419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
36-355
               

               
Cow position:
               
chr17:9697478-9697818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
36-360
               

               
Cow position:
               
chr17:25097655-25097338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
48, 65
               

               
Conread position:
               
36-381
               

               
Cow position:
               
chr17:30665474-30665122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 72
               

               
Conread position:
               
40-336
               

               
Cow position:
               
chr17:14652578-14652881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
42-381
               

               
Cow position:
               
chr17:18108890-18109236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
43-360
               

               
Cow position:
               
chr17:24149382-24149056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
35, 71
               

               
Conread position:
               
43-381
               

               
Cow position:
               
chr17:18495324-18495661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 56
               

               
Conread position:
               
45-327
               

               
Cow position:
               
chr17:21489432-21489716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 53
               

               
Conread position:
               
57-355
               

               
Cow position:
               
chr17:9117818-9117527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
161, 29
               

               
Conread position:
               
57-360
               

               
Cow position:
               
chr17:40288821-40289123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
253, 33
               

               
Conread position:
               
57-381
               

               
Cow position:
               
chr17:4225325-4225641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 33
               

               
Conread position:
               
57-381
               

               
Cow position:
               
chr17:29157594-29157268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
168, 22
               

               
Conread position:
               
57-381
               

               
Cow position:
               
chr17:35126885-35126564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
171, 75
               

               
Conread position:
               
58-361
               

               
Cow position:
               
chr17:24822041-24821740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 32
               

               
Conread position:
               
59-355
               

               
Cow position:
               
chr17:8690277-8690562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
164, 20
               

               
Conread position:
               
60-355
               

               
Cow position:
               
chr17:1060868-1061179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
65, 158
               

               
Conread position:
               
60-355
               

               
Cow position:
               
chr17:17060506-17060799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
182, 29
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr17:23516769-23517031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
169, 27
               

               
Conread position:
               
62-312
               

               
Cow position:
               
chr17:2275641-2275398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
189, 10
               

               
Conread position:
               
64-318
               

               
Cow position:
               
chr17:5850177-5850429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
107, 24
               

               
Conread position:
               
65-290
               

               
Cow position:
               
chr17:22016917-22017142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
163, 26
               

               
Conread position:
               
65-324
               

               
Cow position:
               
chr17:27202876-27203133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
243, 24
               

               
Conread position:
               
65-339
               

               
Cow position:
               
chr17:15340580-15340856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
112, 24
               

               
Conread position:
               
65-339
               

               
Cow position:
               
chr17:34751235-34751509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
145, 28
               

               
Conread position:
               
65-349
               

               
Cow position:
               
chr17:35338749-35339029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
65-354
               

               
Cow position:
               
chr17:18592615-18592325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
156, 201
               

               
Conread position:
               
65-355
               

               
Cow position:
               
chr17:21335519-21335814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
65-355
               

               
Cow position:
               
chr17:21437141-21437438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
65-360
               

               
Cow position:
               
chr17:7698219-7697932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
160, 23
               

               
Conread position:
               
65-360
               

               
Cow position:
               
chr17:32273515-32273810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
148, 24
               

               
Conread position:
               
65-361
               

               
Cow position:
               
chr17:9746685-9746392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
65-373
               

               
Cow position:
               
chr17:20874567-20874253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
170, 31
               

               
Conread position:
               
65-379
               

               
Cow position:
               
chr17:17410463-17410145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chr17:8544475-8544156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
118, 33
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chr17:11280928-11281257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
14, 32
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chr17:24554169-24553854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 149
               

               
Conread position:
               
66-352
               

               
Cow position:
               
chr17:7137156-7136865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
66-355
               

               
Cow position:
               
chr17:8079481-8079197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
157, 12
               

               
Conread position:
               
66-361
               

               
Cow position:
               
chr17:9911928-9911639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
161, 23
               

               
Conread position:
               
66-361
               

               
Cow position:
               
chr17:27048327-27048033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 24
               

               
Conread position:
               
69-355
               

               
Cow position:
               
chr17:1410069-1410359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
69-355
               

               
Cow position:
               
chr17:26765191-26764897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
110, 20
               

               
Conread position:
               
69-381
               

               
Cow position:
               
chr17:38833209-38832892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
103, 10
               

               
Conread position:
               
70-347
               

               
Cow position:
               
chr17:21757976-21758259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
247, 18
               

               
Conread position:
               
70-368
               

               
Cow position:
               
chr17:39857550-39857260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
153, 9
               

               
Conread position:
               
70-381
               

               
Cow position:
               
chr17:5900536-5900228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
151, 19
               

               
Conread position:
               
72-213
               

               
Cow position:
               
chr17:18109383-18109524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
72-257
               

               
Cow position:
               
chr17:18847991-18848183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
72-334
               

               
Cow position:
               
chr17:25189448-25189189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
72-355
               

               
Cow position:
               
chr17:265835-265557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
153, 38
               

               
Conread position:
               
72-355
               

               
Cow position:
               
chr17:6848958-6848685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
254, 21
               

               
Conread position:
               
73-355
               

               
Cow position:
               
chr17:17406299-17406022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
41, 16
               

               
Conread position:
               
74-380
               

               
Cow position:
               
chr17:30718255-30718568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
8, 25
               

               
Conread position:
               
76-355
               

               
Cow position:
               
chr17:12591336-12591047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
76-360
               

               
Cow position:
               
chr17:11156334-11156614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
164, 20
               

               
Conread position:
               
79-353
               

               
Cow position:
               
chr17:22806386-22806655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
261, 17
               

               
Conread position:
               
79-380
               

               
Cow position:
               
chr17:43141552-43141865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
142, 30
               

               
Conread position:
               
80-348
               

               
Cow position:
               
chr17:10561790-10561517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 13
               

               
Conread position:
               
81-360
               

               
Cow position:
               
chr17:21495528-21495253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 99
               

               
Conread position:
               
81-360
               

               
Cow position:
               
chr17:24580138-24580421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
144, 55
               

               
Conread position:
               
81-361
               

               
Cow position:
               
chr17:20990033-20990320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 113
               

               
Conread position:
               
81-381
               

               
Cow position:
               
chr17:979012-979303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
233, 17
               

               
Conread position:
               
81-382
               

               
Cow position:
               
chr17:39736329-39736034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
141, 15
               

               
Conread position:
               
83-313
               

               
Cow position:
               
chr17:40406599-40406366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
145, 121
               

               
Conread position:
               
83-360
               

               
Cow position:
               
chr17:41891909-41892189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
112, 14
               

               
Conread position:
               
84-356
               

               
Cow position:
               
chr17:19891778-19891498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
122, 181
               

               
Conread position:
               
86-355
               

               
Cow position:
               
chr17:33657917-33658190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
149, 33
               

               
Conread position:
               
89-354
               

               
Cow position:
               
chr17:21243641-21243902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
139, 70
               

               
Conread position:
               
89-381
               

               
Cow position:
               
chr17:30539121-30539397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
91-350
               

               
Cow position:
               
chr17:25502257-25501995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
133, 75
               

               
Conread position:
               
96-253
               

               
Cow position:
               
chr17:11478911-11478747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
98-302
               

               
Cow position:
               
chr17:25032342-25032550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
98-312
               

               
Cow position:
               
chr17:11368710-11368927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
123, 38
               

               
Conread position:
               
98-312
               

               
Cow position:
               
chr17:32017752-32017956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
98-380
               

               
Cow position:
               
chr17:11172476-11172764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
122, 22
               

               
Conread position:
               
99-380
               

               
Cow position:
               
chr17:3503720-3503437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 84
               

               
Conread position:
               
104-354
               

               
Cow position:
               
chr17:3683536-3683775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
218, 74
               

               
Conread position:
               
108-381
               

               
Cow position:
               
chr17:18860591-18860869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
17, 23
               

               
Conread position:
               
110-360
               

               
Cow position:
               
chr17:33410881-33411147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
110-381
               

               
Cow position:
               
chr17:14761994-14762269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
103, 98
               

               
Conread position:
               
113-355
               

               
Cow position:
               
chr17:4968237-4967994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 164
               

               
Conread position:
               
114-388
               

               
Cow position:
               
chr17:36500927-36500648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
116-355
               

               
Cow position:
               
chr17:40421793-40421552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
112, 142
               

               
Conread position:
               
116-360
               

               
Cow position:
               
chr17:9565423-9565184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 53
               

               
Conread position:
               
116-381
               

               
Cow position:
               
chr17:3782165-3781895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 26
               

               
Conread position:
               
117-361
               

               
Cow position:
               
chr17:8279587-8279835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
117-381
               

               
Cow position:
               
chr17:924000-923728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
117, 170
               

               
Conread position:
               
118-365
               

               
Cow position:
               
chr17:552849-553087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
119-355
               

               
Cow position:
               
chr17:31231004-31231231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
123, 34
               

               
Conread position:
               
119-381
               

               
Cow position:
               
chr17:38647180-38646914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
109, 155
               

               
Conread position:
               
120-355
               

               
Cow position:
               
chr17:37481951-37482193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
122-349
               

               
Cow position:
               
chr17:23798397-23798168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
101, 203
               

               
Conread position:
               
122-356
               

               
Cow position:
               
chr17:34596056-34595823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 171
               

               
Conread position:
               
122-371
               

               
Cow position:
               
chr17:28540144-28539893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
112, 34
               

               
Conread position:
               
124-303
               

               
Cow position:
               
chr17:21478808-21478990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
101, 35
               

               
Conread position:
               
125-379
               

               
Cow position:
               
chr17:21628591-21628334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 60
               

               
Conread position:
               
127-355
               

               
Cow position:
               
chr17:1275634-1275404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
98, 30
               

               
Conread position:
               
127-381
               

               
Cow position:
               
chr17:25541706-25541963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
98, 155
               

               
Conread position:
               
130-351
               

               
Cow position:
               
chr17:7654344-7654568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
101, 186
               

               
Conread position:
               
131-366
               

               
Cow position:
               
chr17:14060667-14060906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
101, 65
               

               
Conread position:
               
131-379
               

               
Cow position:
               
chr17:21917766-21918022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 66
               

               
Conread position:
               
138-386
               

               
Cow position:
               
chr17:484690-484448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
108, 58
               

               
Conread position:
               
145-355
               

               
Cow position:
               
chr17:4601452-4601664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
27, 120
               

               
Conread position:
               
145-365
               

               
Cow position:
               
chr17:10020698-10020925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
146-381
               

               
Cow position:
               
chr17:20870006-20870249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
74, 173
               

               
Conread position:
               
152-378
               

               
Cow position:
               
chr17:15333624-15333858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
152-381
               

               
Cow position:
               
chr17:12059007-12059241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
157-381
               

               
Cow position:
               
chr17:6624337-6624108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
76, 102
               

               
Conread position:
               
160-381
               

               
Cow position:
               
chr17:20839488-20839711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
153, 67
               

               
Conread position:
               
160-384
               

               
Cow position:
               
chr17:41289944-41290169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
67, 111
               

               
Conread position:
               
165-380
               

               
Cow position:
               
chr17:3306931-3306718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
190, 45
               

               
Conread position:
               
169-360
               

               
Cow position:
               
chr17:10510588-10510783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
169-381
               

               
Cow position:
               
chr17:3471488-3471271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
170-361
               

               
Cow position:
               
chr17:24550245-24550048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
172-381
               

               
Cow position:
               
chr17:9778309-9778101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
67, 51
               

               
Conread position:
               
174-381
               

               
Cow position:
               
chr17:34207751-34207970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
177-360
               

               
Cow position:
               
chr17:21207080-21207256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
183-381
               

               
Cow position:
               
chr17:267530-267734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
45, 72
               

               
Conread position:
               
196-355
               

               
Cow position:
               
chr17:27679195-27679360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
27, 61
               

               
Conread position:
               
202-381
               

               
Cow position:
               
chr17:3442642-3442818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
161, 46
               

               
Conread position:
               
214-381
               

               
Cow position:
               
chr17:4436211-4436381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
141, 111
               

               
Conread position:
               
218-355
               

               
Cow position:
               
chr17:12216053-12216193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
231-355
               

               
Cow position:
               
chr17:21017801-21017678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
231-381
               

               
Cow position:
               
chr17:38613251-38613096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
234-381
               

               
Cow position:
               
chr17:5246894-5246745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
236-361
               

               
Cow position:
               
chr17:13143691-13143816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
252-381
               

               
Cow position:
               
chr17:3182601-3182735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               
Show alignments to all cow chromosomes.