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Cow genome map

           
Conread name:
           
Lym1-jns21_C12.f
        

               
Conread position:
               
1-339
               

               
Cow position:
               
chr21:16152700-16152350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 110
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chr21:46848873-46849250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
220, 63
               

               
Conread position:
               
2-167
               

               
Cow position:
               
chr21:21159062-21158905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr21:16498774-16498554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr21:45835131-45835442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
120, 87
               

               
Conread position:
               
2-355
               

               
Cow position:
               
chr21:24858575-24858218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 273
               

               
Conread position:
               
2-361
               

               
Cow position:
               
chr21:13840587-13840218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
2-381
               

               
Cow position:
               
chr21:34654329-34653954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 77
               

               
Conread position:
               
3-157
               

               
Cow position:
               
chr21:16119904-16120057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
76, 30
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chr21:18055871-18056030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr21:44732785-44732949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
77, 157
               

               
Conread position:
               
3-171
               

               
Cow position:
               
chr21:7460863-7460697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chr21:48334527-48334716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
51, 95
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr21:13883735-13883554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
126, 27
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chr21:20174570-20174385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 74
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr21:30658119-30657930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr21:11182807-11182606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr21:28907291-28907491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
76, 53
               

               
Conread position:
               
3-222
               

               
Cow position:
               
chr21:24875610-24875391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
164, 76
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr21:6851423-6851207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
3-230
               

               
Cow position:
               
chr21:42328403-42328633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 226
               

               
Conread position:
               
3-230
               

               
Cow position:
               
chr21:46451714-46451922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
220, 48
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chr21:22851173-22850950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
223, 62
               

               
Conread position:
               
3-236
               

               
Cow position:
               
chr21:17252719-17252953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
77, 168
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr21:36682584-36682349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 66
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chr21:19868704-19868954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
222, 69
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr21:46599616-46599357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
75, 94
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr21:31279511-31279255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr21:47383291-47383584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
106, 53
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chr21:12354444-12354715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr21:14126530-14126265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr21:28030537-28030265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
229, 30
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr21:24797913-24797640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 96
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr21:19059833-19060137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
88, 110
               

               
Conread position:
               
3-309
               

               
Cow position:
               
chr21:742532-742236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
219, 84
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr21:28919273-28919576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
230, 76
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr21:5465005-5464693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
191, 100
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr21:41140457-41140771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
76, 113
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chr21:47363466-47363792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chr21:8426701-8426385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 77
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr21:8349580-8349268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
225, 29
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr21:15543981-15544278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
197, 30
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr21:22014449-22014120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr21:40266382-40266049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
72, 112
               

               
Conread position:
               
3-331
               

               
Cow position:
               
chr21:33413839-33414158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
218, 46
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr21:44214369-44214048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
198, 69
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr21:22209985-22210333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
3-350
               

               
Cow position:
               
chr21:6998199-6997846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
174, 58
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr21:45906363-45906714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
79, 110
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chr21:20262089-20262427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
119, 27
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chr21:29978507-29978850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chr21:38901021-38900684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr21:40589222-40589575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
79, 242
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr21:641842-641489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 76
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr21:27810650-27810311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 160
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr21:33982556-33982902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 62
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chr21:38449194-38449545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
230, 90
               

               
Conread position:
               
3-356
               

               
Cow position:
               
chr21:37480222-37479862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 87
               

               
Conread position:
               
3-356
               

               
Cow position:
               
chr21:42135361-42135718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 76
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr21:957927-957570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 86
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr21:14464844-14464478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 161
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr21:23587130-23586778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
220, 57
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr21:39403270-39403637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
202, 85
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chr21:41974109-41974477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
69, 119
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr21:5898151-5898501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr21:6051763-6051403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
23, 224
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr21:12461711-12462073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 70
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr21:21215899-21216244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
116, 30
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chr21:27229545-27229898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 62
               

               
Conread position:
               
3-367
               

               
Cow position:
               
chr21:32339487-32339846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 60
               

               
Conread position:
               
3-368
               

               
Cow position:
               
chr21:36763320-36762934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
75, 346
               

               
Conread position:
               
3-372
               

               
Cow position:
               
chr21:30848690-30849058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
192, 85
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chr21:30222600-30222222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 62
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chr21:42841327-42841712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 303
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr21:27568901-27569286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
83, 170
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr21:44825617-44826009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 47
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chr21:4400051-4399673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
102, 56
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chr21:28733654-28734038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr21:802065-802421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr21:17184176-17183794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 99
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr21:20153215-20152820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
72, 109
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr21:27521084-27521456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
310, 14
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr21:29213901-29214276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 13
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr21:30592056-30592431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
217, 59
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr21:37299718-37299342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr21:41590308-41590684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 86
               

               
Conread position:
               
4-225
               

               
Cow position:
               
chr21:39394006-39393784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
18, 86
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr21:41522157-41522456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
74, 25
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr21:31691728-31691385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
223, 31
               

               
Conread position:
               
5-355
               

               
Cow position:
               
chr21:32559115-32559452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
5-358
               

               
Cow position:
               
chr21:37789746-37790102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
226, 67
               

               
Conread position:
               
5-380
               

               
Cow position:
               
chr21:10114077-10114455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
5-381
               

               
Cow position:
               
chr21:42007212-42007587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
6-167
               

               
Cow position:
               
chr21:37495689-37495852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 92
               

               
Conread position:
               
6-255
               

               
Cow position:
               
chr21:12104608-12104367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
159, 82
               

               
Conread position:
               
6-262
               

               
Cow position:
               
chr21:7169942-7169682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
74, 94
               

               
Conread position:
               
6-302
               

               
Cow position:
               
chr21:13842748-13842444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
6-312
               

               
Cow position:
               
chr21:47713752-47714057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
59, 110
               

               
Conread position:
               
6-339
               

               
Cow position:
               
chr21:82314-81998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
6-350
               

               
Cow position:
               
chr21:30835621-30835270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
53, 87
               

               
Conread position:
               
6-354
               

               
Cow position:
               
chr21:22121757-22121426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 59
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chr21:47464864-47465215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 130
               

               
Conread position:
               
6-365
               

               
Cow position:
               
chr21:8207012-8206665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
207, 59
               

               
Conread position:
               
6-380
               

               
Cow position:
               
chr21:23822407-23822041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
349, 116
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr21:643575-643206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 19
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr21:3585109-3585486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
71, 116
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr21:8351039-8351432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
158, 83
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr21:11644711-11645096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 199
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr21:18568382-18568777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 105
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr21:20160933-20160556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 25
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr21:20260042-20260448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr21:44565474-44565828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
266, 24
               

               
Conread position:
               
7-167
               

               
Cow position:
               
chr21:40930222-40930381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
7-352
               

               
Cow position:
               
chr21:28211431-28211107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
7-360
               

               
Cow position:
               
chr21:30231442-30231800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
68, 109
               

               
Conread position:
               
7-381
               

               
Cow position:
               
chr21:27145731-27146119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
24, 116
               

               
Conread position:
               
8-361
               

               
Cow position:
               
chr21:10673374-10673028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
19, 51
               

               
Conread position:
               
8-381
               

               
Cow position:
               
chr21:15584170-15584541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
8-381
               

               
Cow position:
               
chr21:22861245-22860874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 59
               

               
Conread position:
               
9-165
               

               
Cow position:
               
chr21:31462809-31462658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
9-186
               

               
Cow position:
               
chr21:745422-745250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chr21:8506295-8506488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chr21:8509183-8509376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
9-208
               

               
Cow position:
               
chr21:25012330-25012135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
9-267
               

               
Cow position:
               
chr21:21616028-21615765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
205, 20
               

               
Conread position:
               
9-271
               

               
Cow position:
               
chr21:71838-71573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
225, 113
               

               
Conread position:
               
9-273
               

               
Cow position:
               
chr21:44724124-44724380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
9-287
               

               
Cow position:
               
chr21:20165891-20165612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
69, 8
               

               
Conread position:
               
9-302
               

               
Cow position:
               
chr21:29014665-29014957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
174, 70
               

               
Conread position:
               
9-310
               

               
Cow position:
               
chr21:36910989-36910688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
164, 60
               

               
Conread position:
               
9-311
               

               
Cow position:
               
chr21:13656382-13656682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
65, 96
               

               
Conread position:
               
9-312
               

               
Cow position:
               
chr21:5238640-5238332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
114, 54
               

               
Conread position:
               
9-312
               

               
Cow position:
               
chr21:17890555-17890249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 90
               

               
Conread position:
               
9-315
               

               
Cow position:
               
chr21:868667-868982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
66, 94
               

               
Conread position:
               
9-330
               

               
Cow position:
               
chr21:1511538-1511219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
224, 70
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chr21:47719053-47719373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
210, 5
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr21:16570141-16569825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
221, 20
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chr21:19702982-19702648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
114, 56
               

               
Conread position:
               
9-339
               

               
Cow position:
               
chr21:45970927-45971254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
169, 67
               

               
Conread position:
               
9-353
               

               
Cow position:
               
chr21:13034783-13035138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
107, 90
               

               
Conread position:
               
9-354
               

               
Cow position:
               
chr21:18289929-18289568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
55, 305
               

               
Conread position:
               
9-354
               

               
Cow position:
               
chr21:23568477-23568121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
171, 67
               

               
Conread position:
               
9-354
               

               
Cow position:
               
chr21:42501304-42500940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
58, 91
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chr21:9301477-9301115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 60
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chr21:12916166-12916523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 118
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chr21:17638147-17637805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 105
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chr21:17874938-17875289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
57, 53
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chr21:23535965-23535616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chr21:29001894-29002255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 117
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr21:5970594-5970941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
120, 55
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr21:13047938-13048299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
74, 298
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr21:18155312-18155672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
69, 48
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr21:23979927-23980284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
64, 109
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr21:27863267-27863618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
212, 62
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr21:40134398-40134058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
206, 55
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr21:41621380-41621022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
74, 117
               

               
Conread position:
               
9-365
               

               
Cow position:
               
chr21:11739867-11740225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 44
               

               
Conread position:
               
9-366
               

               
Cow position:
               
chr21:12154377-12154028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 71
               

               
Conread position:
               
9-380
               

               
Cow position:
               
chr21:24296513-24296891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
74, 116
               

               
Conread position:
               
9-380
               

               
Cow position:
               
chr21:44251589-44251952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 20
               

               
Conread position:
               
9-380
               

               
Cow position:
               
chr21:45151373-45151749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
69, 105
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:47299-46911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
63, 113
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:938273-937911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
58, 84
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:3763499-3763865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
229, 20
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:4281631-4281995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
221, 70
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:5427179-5426816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
213, 36
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:6834302-6833925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
66, 118
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:7673365-7673005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
210, 62
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:10004631-10005013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 149
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:10264287-10263913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
65, 92
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:17193496-17193887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:22193842-22194238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:28244719-28244348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
174, 70
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:29069071-29069456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:29979520-29979883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
96, 70
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:37706160-37706534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 113
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chr21:47861433-47861067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
150, 24
               

               
Conread position:
               
9-393
               

               
Cow position:
               
chr21:25127863-25127460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 109
               

               
Conread position:
               
10-230
               

               
Cow position:
               
chr21:41287545-41287762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
10-242
               

               
Cow position:
               
chr21:24266310-24266544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
60, 110
               

               
Conread position:
               
10-261
               

               
Cow position:
               
chr21:19240627-19240880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
212, 41
               

               
Conread position:
               
10-340
               

               
Cow position:
               
chr21:41107525-41107844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
10-351
               

               
Cow position:
               
chr21:48637504-48637853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
10-352
               

               
Cow position:
               
chr21:17559665-17560023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
10-355
               

               
Cow position:
               
chr21:19195910-19196260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
65, 96
               

               
Conread position:
               
10-355
               

               
Cow position:
               
chr21:33580662-33580315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
214, 38
               

               
Conread position:
               
10-361
               

               
Cow position:
               
chr21:34151827-34151477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
213, 24
               

               
Conread position:
               
10-379
               

               
Cow position:
               
chr21:14452484-14452111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
10-381
               

               
Cow position:
               
chr21:25345115-25344750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
68, 102
               

               
Conread position:
               
10-382
               

               
Cow position:
               
chr21:14760808-14760452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
175, 33
               

               
Conread position:
               
11-208
               

               
Cow position:
               
chr21:40820601-40820800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
61, 96
               

               
Conread position:
               
11-355
               

               
Cow position:
               
chr21:41156121-41155766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
54, 105
               

               
Conread position:
               
11-360
               

               
Cow position:
               
chr21:40899591-40899238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
66, 42
               

               
Conread position:
               
11-373
               

               
Cow position:
               
chr21:2260098-2260473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 154
               

               
Conread position:
               
12-361
               

               
Cow position:
               
chr21:10561336-10561687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
200, 77
               

               
Conread position:
               
12-382
               

               
Cow position:
               
chr21:7824941-7825304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
71, 82
               

               
Conread position:
               
13-337
               

               
Cow position:
               
chr21:10410471-10410139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
50, 70
               

               
Conread position:
               
13-360
               

               
Cow position:
               
chr21:49699789-49700138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
61, 113
               

               
Conread position:
               
14-221
               

               
Cow position:
               
chr21:20163954-20163748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
14-355
               

               
Cow position:
               
chr21:19767112-19766757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
7, 112
               

               
Conread position:
               
18-266
               

               
Cow position:
               
chr21:828967-829220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
207, 93
               

               
Conread position:
               
18-381
               

               
Cow position:
               
chr21:46912792-46912414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
21-355
               

               
Cow position:
               
chr21:22856460-22856121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
25-355
               

               
Cow position:
               
chr21:6624395-6624061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
33, 89
               

               
Conread position:
               
36-360
               

               
Cow position:
               
chr21:9416475-9416144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
119, 59
               

               
Conread position:
               
36-360
               

               
Cow position:
               
chr21:40786905-40786572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 116
               

               
Conread position:
               
37-384
               

               
Cow position:
               
chr21:35569136-35569507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
14, 283
               

               
Conread position:
               
45-260
               

               
Cow position:
               
chr21:7394072-7394287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
7, 108
               

               
Conread position:
               
45-355
               

               
Cow position:
               
chr21:9990727-9990419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
40, 164
               

               
Conread position:
               
48-260
               

               
Cow position:
               
chr21:28600096-28599887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
57-354
               

               
Cow position:
               
chr21:1591750-1591454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
171, 20
               

               
Conread position:
               
57-355
               

               
Cow position:
               
chr21:23321877-23322177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
176, 22
               

               
Conread position:
               
57-381
               

               
Cow position:
               
chr21:12617371-12617012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
57-381
               

               
Cow position:
               
chr21:18800333-18800656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
120, 22
               

               
Conread position:
               
59-381
               

               
Cow position:
               
chr21:10152004-10151667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
61-361
               

               
Cow position:
               
chr21:33916-33618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
68, 18
               

               
Conread position:
               
63-354
               

               
Cow position:
               
chr21:25628714-25629004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
6, 28
               

               
Conread position:
               
63-381
               

               
Cow position:
               
chr21:33264041-33263723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
165, 35
               

               
Conread position:
               
64-247
               

               
Cow position:
               
chr21:19359980-19360166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
64-253
               

               
Cow position:
               
chr21:11057687-11057870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
64-334
               

               
Cow position:
               
chr21:36910129-36909858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
21, 58
               

               
Conread position:
               
64-355
               

               
Cow position:
               
chr21:5392341-5392636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
110, 25
               

               
Conread position:
               
64-355
               

               
Cow position:
               
chr21:7581709-7582003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
185, 25
               

               
Conread position:
               
64-356
               

               
Cow position:
               
chr21:27624895-27624611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
64-361
               

               
Cow position:
               
chr21:10633447-10633744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
161, 23
               

               
Conread position:
               
64-366
               

               
Cow position:
               
chr21:30250008-30250298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
64-381
               

               
Cow position:
               
chr21:13127905-13128221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
64-381
               

               
Cow position:
               
chr21:13365540-13365217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
18, 111
               

               
Conread position:
               
64-381
               

               
Cow position:
               
chr21:29485174-29484856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 25
               

               
Conread position:
               
65-218
               

               
Cow position:
               
chr21:5341900-5342051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
65-355
               

               
Cow position:
               
chr21:17009173-17008884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
145, 14
               

               
Conread position:
               
65-355
               

               
Cow position:
               
chr21:33350934-33350649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
163, 14
               

               
Conread position:
               
65-355
               

               
Cow position:
               
chr21:36297689-36297393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
65-355
               

               
Cow position:
               
chr21:41579949-41579654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
180, 14
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chr21:18790373-18790683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
174, 14
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chr21:19673999-19673687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
159, 36
               

               
Conread position:
               
65-385
               

               
Cow position:
               
chr21:36795796-36795474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
171, 22
               

               
Conread position:
               
66-267
               

               
Cow position:
               
chr21:30980386-30980587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
153, 13
               

               
Conread position:
               
66-354
               

               
Cow position:
               
chr21:41598003-41597723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
248, 13
               

               
Conread position:
               
66-381
               

               
Cow position:
               
chr21:26245106-26244804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
67-295
               

               
Cow position:
               
chr21:29014365-29014597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
164, 197
               

               
Conread position:
               
69-333
               

               
Cow position:
               
chr21:4280482-4280747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
69-355
               

               
Cow position:
               
chr21:33210379-33210105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
70-355
               

               
Cow position:
               
chr21:42348508-42348771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
70-366
               

               
Cow position:
               
chr21:47763928-47764219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
173, 20
               

               
Conread position:
               
70-367
               

               
Cow position:
               
chr21:21077791-21077493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
70-381
               

               
Cow position:
               
chr21:396055-395748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
71-353
               

               
Cow position:
               
chr21:18828115-18828401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
157, 25
               

               
Conread position:
               
72-273
               

               
Cow position:
               
chr21:47160409-47160202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 184
               

               
Conread position:
               
72-360
               

               
Cow position:
               
chr21:1059262-1058978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
125, 41
               

               
Conread position:
               
72-361
               

               
Cow position:
               
chr21:32237468-32237194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
236, 87
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chr21:33563189-33562886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
167, 7
               

               
Conread position:
               
73-355
               

               
Cow position:
               
chr21:42384694-42384412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 23
               

               
Conread position:
               
73-381
               

               
Cow position:
               
chr21:45920873-45921186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
157, 23
               

               
Conread position:
               
75-355
               

               
Cow position:
               
chr21:25764820-25764541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
76-354
               

               
Cow position:
               
chr21:28626420-28626145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
150, 20
               

               
Conread position:
               
77-335
               

               
Cow position:
               
chr21:45262626-45262889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 187
               

               
Conread position:
               
78-355
               

               
Cow position:
               
chr21:12723331-12723063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 12
               

               
Conread position:
               
79-360
               

               
Cow position:
               
chr21:44671924-44671655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
79-365
               

               
Cow position:
               
chr21:22465370-22465090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
146, 19
               

               
Conread position:
               
79-379
               

               
Cow position:
               
chr21:10001255-10000954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
81-355
               

               
Cow position:
               
chr21:28191212-28190935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
144, 88
               

               
Conread position:
               
82-317
               

               
Cow position:
               
chr21:37384663-37384426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
82-354
               

               
Cow position:
               
chr21:18850044-18850322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
21, 247
               

               
Conread position:
               
82-365
               

               
Cow position:
               
chr21:9940012-9940302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
143, 8
               

               
Conread position:
               
83-365
               

               
Cow position:
               
chr21:34740022-34739739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
117, 136
               

               
Conread position:
               
83-381
               

               
Cow position:
               
chr21:45356011-45355709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
158, 167
               

               
Conread position:
               
86-351
               

               
Cow position:
               
chr21:35354708-35354440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
42, 132
               

               
Conread position:
               
90-315
               

               
Cow position:
               
chr21:297925-297696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
132, 190
               

               
Conread position:
               
90-349
               

               
Cow position:
               
chr21:31090264-31090511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 84
               

               
Conread position:
               
90-372
               

               
Cow position:
               
chr21:15911571-15911282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
134, 73
               

               
Conread position:
               
90-381
               

               
Cow position:
               
chr21:33791211-33791495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
222, 21
               

               
Conread position:
               
90-381
               

               
Cow position:
               
chr21:38121272-38120980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
136, 177
               

               
Conread position:
               
90-381
               

               
Cow position:
               
chr21:46264341-46264047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 102
               

               
Conread position:
               
94-345
               

               
Cow position:
               
chr21:47215029-47215268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
98-281
               

               
Cow position:
               
chr21:40192141-40192324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
133, 103
               

               
Conread position:
               
98-381
               

               
Cow position:
               
chr21:12801584-12801874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
80, 190
               

               
Conread position:
               
98-381
               

               
Cow position:
               
chr21:30606922-30607215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
5, 213
               

               
Conread position:
               
98-381
               

               
Cow position:
               
chr21:30990124-30990396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
136, 56
               

               
Conread position:
               
99-263
               

               
Cow position:
               
chr21:20183233-20183066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
102-313
               

               
Cow position:
               
chr21:35900000-35899789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
102-360
               

               
Cow position:
               
chr21:20418523-20418787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
103-360
               

               
Cow position:
               
chr21:45330449-45330706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
122, 66
               

               
Conread position:
               
104-354
               

               
Cow position:
               
chr21:18844855-18845111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
108-355
               

               
Cow position:
               
chr21:42540069-42540314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
121, 155
               

               
Conread position:
               
108-381
               

               
Cow position:
               
chr21:33997076-33997349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
121, 16
               

               
Conread position:
               
110-380
               

               
Cow position:
               
chr21:16187656-16187932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 156
               

               
Conread position:
               
116-353
               

               
Cow position:
               
chr21:18842092-18842329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 162
               

               
Conread position:
               
116-354
               

               
Cow position:
               
chr21:31662612-31662368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 148
               

               
Conread position:
               
116-371
               

               
Cow position:
               
chr21:41878614-41878358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
109, 25
               

               
Conread position:
               
116-381
               

               
Cow position:
               
chr21:34390830-34391098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
116-381
               

               
Cow position:
               
chr21:35897481-35897753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 125
               

               
Conread position:
               
118-381
               

               
Cow position:
               
chr21:4998351-4998614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 88
               

               
Conread position:
               
122-381
               

               
Cow position:
               
chr21:39401729-39401467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
88, 21
               

               
Conread position:
               
124-361
               

               
Cow position:
               
chr21:18415189-18414947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
98, 55
               

               
Conread position:
               
127-354
               

               
Cow position:
               
chr21:11360169-11359945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
127-360
               

               
Cow position:
               
chr21:724751-724990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
101, 37
               

               
Conread position:
               
127-361
               

               
Cow position:
               
chr21:44515398-44515162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
106, 158
               

               
Conread position:
               
127-373
               

               
Cow position:
               
chr21:20193028-20192783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
100, 32
               

               
Conread position:
               
127-380
               

               
Cow position:
               
chr21:46859988-46860230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
232, 31
               

               
Conread position:
               
127-381
               

               
Cow position:
               
chr21:10601241-10601496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
101, 146
               

               
Conread position:
               
127-381
               

               
Cow position:
               
chr21:19363325-19363591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
127-381
               

               
Cow position:
               
chr21:24642654-24642392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
107, 32
               

               
Conread position:
               
127-381
               

               
Cow position:
               
chr21:28442866-28442617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
220, 99
               

               
Conread position:
               
128-355
               

               
Cow position:
               
chr21:17428629-17428405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 68
               

               
Conread position:
               
128-355
               

               
Cow position:
               
chr21:18941701-18941927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 116
               

               
Conread position:
               
129-314
               

               
Cow position:
               
chr21:46144091-46143903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
88, 80
               

               
Conread position:
               
129-354
               

               
Cow position:
               
chr21:43357124-43357357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
51, 116
               

               
Conread position:
               
129-355
               

               
Cow position:
               
chr21:22353105-22353328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
125, 67
               

               
Conread position:
               
131-354
               

               
Cow position:
               
chr21:13488657-13488427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
65, 217
               

               
Conread position:
               
131-355
               

               
Cow position:
               
chr21:42097205-42096971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
132-362
               

               
Cow position:
               
chr21:47066772-47067001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 26
               

               
Conread position:
               
133-355
               

               
Cow position:
               
chr21:23192381-23192611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
133-357
               

               
Cow position:
               
chr21:6017753-6017517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
133-361
               

               
Cow position:
               
chr21:35997300-35997070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
133-381
               

               
Cow position:
               
chr21:3498621-3498371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
176, 53
               

               
Conread position:
               
135-381
               

               
Cow position:
               
chr21:11456683-11456937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
89, 43
               

               
Conread position:
               
136-360
               

               
Cow position:
               
chr21:17856669-17856445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
86, 167
               

               
Conread position:
               
136-363
               

               
Cow position:
               
chr21:5636595-5636823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
137-381
               

               
Cow position:
               
chr21:2367456-2367213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
91, 220
               

               
Conread position:
               
142-355
               

               
Cow position:
               
chr21:10118678-10118460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
82, 62
               

               
Conread position:
               
142-381
               

               
Cow position:
               
chr21:23149902-23150147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
86, 56
               

               
Conread position:
               
145-360
               

               
Cow position:
               
chr21:24222421-24222640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
148-339
               

               
Cow position:
               
chr21:37014293-37014484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
162, 98
               

               
Conread position:
               
149-355
               

               
Cow position:
               
chr21:2679669-2679459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
75, 112
               

               
Conread position:
               
150-379
               

               
Cow position:
               
chr21:6102151-6102385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
151-355
               

               
Cow position:
               
chr21:44733063-44733255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
78, 126
               

               
Conread position:
               
153-355
               

               
Cow position:
               
chr21:2904370-2904570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
75, 55
               

               
Conread position:
               
156-379
               

               
Cow position:
               
chr21:28882244-28882017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 189
               

               
Conread position:
               
160-380
               

               
Cow position:
               
chr21:4795327-4795099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
68, 51
               

               
Conread position:
               
165-371
               

               
Cow position:
               
chr21:5985222-5985430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
73, 90
               

               
Conread position:
               
166-379
               

               
Cow position:
               
chr21:18041752-18041968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
68, 199
               

               
Conread position:
               
174-355
               

               
Cow position:
               
chr21:28443285-28443471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
9, 87
               

               
Conread position:
               
174-381
               

               
Cow position:
               
chr21:16612712-16612502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
54, 116
               

               
Conread position:
               
177-354
               

               
Cow position:
               
chr21:14515925-14515753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
167, 38
               

               
Conread position:
               
177-381
               

               
Cow position:
               
chr21:13898272-13898061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
182-355
               

               
Cow position:
               
chr21:12960819-12960996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
41, 76
               

               
Conread position:
               
182-384
               

               
Cow position:
               
chr21:21077405-21077192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 65
               

               
Conread position:
               
191-355
               

               
Cow position:
               
chr21:18495034-18494872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
48, 20
               

               
Conread position:
               
191-361
               

               
Cow position:
               
chr21:911896-912070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
211-355
               

               
Cow position:
               
chr21:48250980-48251123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
214-381
               

               
Cow position:
               
chr21:41957132-41957301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 9
               

               
Conread position:
               
214-381
               

               
Cow position:
               
chr21:42024169-42023997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
225-360
               

               
Cow position:
               
chr21:34141149-34141287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
8, 88
               

               
Conread position:
               
236-381
               

               
Cow position:
               
chr21:37361454-37361595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
78, 105
               

               
Conread position:
               
241-359
               

               
Cow position:
               
chr21:4568301-4568184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
246-381
               

               
Cow position:
               
chr21:23683560-23683427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
110, 0
               
Show alignments to all cow chromosomes.