Non-Coding RNA Search

Cow genome map


           Conread name:
           Lym1-jns21_C12.f
        

               Conread position:
               1-300
               

               Cow position:
               chr3:60389924-60389638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               1-352
               

               Cow position:
               chr3:76267802-76268161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               65, 115
               

               Conread position:
               1-356
               

               Cow position:
               chr3:57274230-57273881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 32
               

               Conread position:
               1-360
               

               Cow position:
               chr3:55124113-55124467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               86, 29
               

               Conread position:
               2-237
               

               Cow position:
               chr3:48459158-48459391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               103, 86
               

               Conread position:
               2-240
               

               Cow position:
               chr3:75173429-75173647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               2-303
               

               Cow position:
               chr3:18059875-18059569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               76, 107
               

               Conread position:
               2-348
               

               Cow position:
               chr3:62046842-62046485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               67, 117
               

               Conread position:
               2-355
               

               Cow position:
               chr3:31297986-31298340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               76, 212
               

               Conread position:
               2-355
               

               Cow position:
               chr3:74754486-74754144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               246
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               227, 63
               

               Conread position:
               2-355
               

               Cow position:
               chr3:80072314-80071942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 41
               

               Conread position:
               2-381
               

               Cow position:
               chr3:30180254-30179869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               261
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               195, 77
               

               Conread position:
               2-381
               

               Cow position:
               chr3:33252721-33253095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               128, 86
               

               Conread position:
               3-152
               

               Cow position:
               chr3:22903588-22903732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               3-167
               

               Cow position:
               chr3:19611183-19611346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               3-167
               

               Cow position:
               chr3:74050536-74050696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               3-181
               

               Cow position:
               chr3:43895893-43896068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               3-182
               

               Cow position:
               chr3:19709275-19709101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               3-182
               

               Cow position:
               chr3:22868546-22868729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               3-188
               

               Cow position:
               chr3:8522984-8523165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               62, 87
               

               Conread position:
               3-188
               

               Cow position:
               chr3:33002555-33002372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               119, 82
               

               Conread position:
               3-194
               

               Cow position:
               chr3:15160687-15160499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               3-194
               

               Cow position:
               chr3:31115108-31115291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               3-194
               

               Cow position:
               chr3:75966612-75966802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               105, 75
               

               Conread position:
               3-195
               

               Cow position:
               chr3:4518014-4518204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               76, 93
               

               Conread position:
               3-199
               

               Cow position:
               chr3:67407197-67407392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               81, 96
               

               Conread position:
               3-204
               

               Cow position:
               chr3:52845725-52845520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               160
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               77, 94
               

               Conread position:
               3-221
               

               Cow position:
               chr3:8349401-8349613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               172, 20
               

               Conread position:
               3-226
               

               Cow position:
               chr3:9121012-9120792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               70, 29
               

               Conread position:
               3-230
               

               Cow position:
               chr3:23131998-23132227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               3-231
               

               Cow position:
               chr3:81234558-81234332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               61, 78
               

               Conread position:
               3-233
               

               Cow position:
               chr3:49344862-49344633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               77, 20
               

               Conread position:
               3-236
               

               Cow position:
               chr3:71703628-71703415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               3-251
               

               Cow position:
               chr3:76270058-76269816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               3-253
               

               Cow position:
               chr3:10668709-10668962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               72, 88
               

               Conread position:
               3-256
               

               Cow position:
               chr3:18001356-18001115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               173
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               220, 32
               

               Conread position:
               3-260
               

               Cow position:
               chr3:69785450-69785716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               3-260
               

               Cow position:
               chr3:71474237-71474498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               80, 70
               

               Conread position:
               3-261
               

               Cow position:
               chr3:49363277-49363024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               3-262
               

               Cow position:
               chr3:75608658-75608405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               225, 69
               

               Conread position:
               3-265
               

               Cow position:
               chr3:14547169-14546907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               80, 96
               

               Conread position:
               3-270
               

               Cow position:
               chr3:31361593-31361318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               174, 62
               

               Conread position:
               3-271
               

               Cow position:
               chr3:1037198-1036926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               196
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               63, 223
               

               Conread position:
               3-271
               

               Cow position:
               chr3:22165245-22165518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               196
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               76, 157
               

               Conread position:
               3-273
               

               Cow position:
               chr3:3316638-3316915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               195
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               62, 155
               

               Conread position:
               3-275
               

               Cow position:
               chr3:44960848-44961094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               3-289
               

               Cow position:
               chr3:15950747-15951030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 77
               

               Conread position:
               3-296
               

               Cow position:
               chr3:59605012-59604725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 85
               

               Conread position:
               3-299
               

               Cow position:
               chr3:17058377-17058669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               234, 88
               

               Conread position:
               3-299
               

               Cow position:
               chr3:54739730-54740017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               205
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               175, 28
               

               Conread position:
               3-302
               

               Cow position:
               chr3:71238646-71238342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               20, 164
               

               Conread position:
               3-303
               

               Cow position:
               chr3:76156156-76155855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               230, 87
               

               Conread position:
               3-311
               

               Cow position:
               chr3:18426530-18426840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               217
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               126, 89
               

               Conread position:
               3-311
               

               Cow position:
               chr3:22221496-22221180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               211
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               81, 97
               

               Conread position:
               3-311
               

               Cow position:
               chr3:74584360-74584077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               3-311
               

               Cow position:
               chr3:78093223-78093524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               3-312
               

               Cow position:
               chr3:1517343-1517655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               220, 75
               

               Conread position:
               3-312
               

               Cow position:
               chr3:17331889-17331585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               225
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               224, 50
               

               Conread position:
               3-312
               

               Cow position:
               chr3:73237353-73237053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               224
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               220, 71
               

               Conread position:
               3-315
               

               Cow position:
               chr3:19586034-19585717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 158
               

               Conread position:
               3-315
               

               Cow position:
               chr3:55177581-55177897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 69
               

               Conread position:
               3-324
               

               Cow position:
               chr3:59474290-59473967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               95, 113
               

               Conread position:
               3-329
               

               Cow position:
               chr3:77582276-77581950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               224
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               76, 92
               

               Conread position:
               3-333
               

               Cow position:
               chr3:58764916-58765239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               207, 62
               

               Conread position:
               3-336
               

               Cow position:
               chr3:83441723-83442047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               226
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               54, 109
               

               Conread position:
               3-337
               

               Cow position:
               chr3:68616165-68616491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 67
               

               Conread position:
               3-339
               

               Cow position:
               chr3:54100543-54100891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               75, 229
               

               Conread position:
               3-350
               

               Cow position:
               chr3:68587189-68586844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               10, 77
               

               Conread position:
               3-350
               

               Cow position:
               chr3:75107942-75107615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               3-351
               

               Cow position:
               chr3:78077360-78077013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 229
               

               Conread position:
               3-352
               

               Cow position:
               chr3:26982219-26981883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               66, 27
               

               Conread position:
               3-352
               

               Cow position:
               chr3:70896209-70895869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               243
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               172, 89
               

               Conread position:
               3-352
               

               Cow position:
               chr3:71231568-71231217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               74, 155
               

               Conread position:
               3-353
               

               Cow position:
               chr3:53428748-53429078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               3-354
               

               Cow position:
               chr3:5365835-5365488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               223, 26
               

               Conread position:
               3-354
               

               Cow position:
               chr3:7330968-7331296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               3-354
               

               Cow position:
               chr3:57764383-57764044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               242
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               69, 30
               

               Conread position:
               3-354
               

               Cow position:
               chr3:59610549-59610905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 94
               

               Conread position:
               3-354
               

               Cow position:
               chr3:73764045-73764379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               230, 66
               

               Conread position:
               3-355
               

               Cow position:
               chr3:2518371-2518717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               236
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               37, 62
               

               Conread position:
               3-355
               

               Cow position:
               chr3:7337617-7337954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               252
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               54, 31
               

               Conread position:
               3-355
               

               Cow position:
               chr3:12705377-12705730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 85
               

               Conread position:
               3-355
               

               Cow position:
               chr3:17936677-17937019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 76
               

               Conread position:
               3-355
               

               Cow position:
               chr3:23471293-23471648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               180, 54
               

               Conread position:
               3-355
               

               Cow position:
               chr3:26970981-26970643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               244
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               87, 20
               

               Conread position:
               3-355
               

               Cow position:
               chr3:39969693-39970052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 86
               

               Conread position:
               3-355
               

               Cow position:
               chr3:45647836-45647496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 77
               

               Conread position:
               3-355
               

               Cow position:
               chr3:48363239-48362901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 75
               

               Conread position:
               3-355
               

               Cow position:
               chr3:49328104-49327757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 45
               

               Conread position:
               3-355
               

               Cow position:
               chr3:50768849-50768498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 0
               

               Conread position:
               3-355
               

               Cow position:
               chr3:53739012-53739370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               239
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               49, 89
               

               Conread position:
               3-355
               

               Cow position:
               chr3:53790372-53790721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 37
               

               Conread position:
               3-355
               

               Cow position:
               chr3:54506876-54506525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 96
               

               Conread position:
               3-355
               

               Cow position:
               chr3:67744471-67744807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               239
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               223, 26
               

               Conread position:
               3-355
               

               Cow position:
               chr3:68156897-68156557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 31
               

               Conread position:
               3-355
               

               Cow position:
               chr3:68707852-68708188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 69
               

               Conread position:
               3-355
               

               Cow position:
               chr3:73467796-73467438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               102, 26
               

               Conread position:
               3-355
               

               Cow position:
               chr3:74234351-74234012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               3-355
               

               Cow position:
               chr3:74533504-74533168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 76
               

               Conread position:
               3-355
               

               Cow position:
               chr3:78092341-78092690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 88
               

               Conread position:
               3-357
               

               Cow position:
               chr3:73395285-73394934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               245
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               63, 48
               

               Conread position:
               3-360
               

               Cow position:
               chr3:2392799-2393151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               249
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               76, 105
               

               Conread position:
               3-360
               

               Cow position:
               chr3:8393509-8393161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               225, 14
               

               Conread position:
               3-360
               

               Cow position:
               chr3:23408194-23408540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               3-360
               

               Cow position:
               chr3:54903737-54903383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               84, 186
               

               Conread position:
               3-360
               

               Cow position:
               chr3:55712601-55712240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               220, 50
               

               Conread position:
               3-360
               

               Cow position:
               chr3:64280768-64281121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               178, 74
               

               Conread position:
               3-360
               

               Cow position:
               chr3:83215439-83215064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               3-361
               

               Cow position:
               chr3:18459367-18459710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               239
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               301, 26
               

               Conread position:
               3-361
               

               Cow position:
               chr3:18687071-18686717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 69
               

               Conread position:
               3-361
               

               Cow position:
               chr3:83474924-83474557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               255
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               72, 104
               

               Conread position:
               3-368
               

               Cow position:
               chr3:7662027-7661652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               69, 160
               

               Conread position:
               3-371
               

               Cow position:
               chr3:60597707-60597341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               260
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               126, 62
               

               Conread position:
               3-379
               

               Cow position:
               chr3:29359994-29360341 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               229, 57
               

               Conread position:
               3-379
               

               Cow position:
               chr3:55318728-55319110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               263
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               72, 98
               

               Conread position:
               3-381
               

               Cow position:
               chr3:8061290-8060918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 30
               

               Conread position:
               3-381
               

               Cow position:
               chr3:9641725-9641350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 69
               

               Conread position:
               3-381
               

               Cow position:
               chr3:10958074-10958443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 29
               

               Conread position:
               3-381
               

               Cow position:
               chr3:14553042-14552664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               258
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               84, 60
               

               Conread position:
               3-381
               

               Cow position:
               chr3:15051782-15052159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 87
               

               Conread position:
               3-381
               

               Cow position:
               chr3:15057472-15057812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               142, 69
               

               Conread position:
               3-381
               

               Cow position:
               chr3:16333974-16333592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               70, 126
               

               Conread position:
               3-381
               

               Cow position:
               chr3:17694832-17695219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               251
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               75, 221
               

               Conread position:
               3-381
               

               Cow position:
               chr3:26066157-26065787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 77
               

               Conread position:
               3-381
               

               Cow position:
               chr3:26904269-26903901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               262
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               131, 61
               

               Conread position:
               3-381
               

               Cow position:
               chr3:27274697-27274319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               225, 86
               

               Conread position:
               3-381
               

               Cow position:
               chr3:37041586-37041213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               70, 27
               

               Conread position:
               3-381
               

               Cow position:
               chr3:54781823-54782225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               283
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               65, 125
               

               Conread position:
               3-381
               

               Cow position:
               chr3:55189580-55189965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 92
               

               Conread position:
               3-381
               

               Cow position:
               chr3:68145685-68146050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               120, 30
               

               Conread position:
               3-381
               

               Cow position:
               chr3:75158525-75158151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               263
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               61, 26
               

               Conread position:
               3-381
               

               Cow position:
               chr3:75480168-75479798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 66
               

               Conread position:
               3-381
               

               Cow position:
               chr3:75570276-75570657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               123, 50
               

               Conread position:
               3-381
               

               Cow position:
               chr3:76713142-76713536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               260
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               63, 178
               

               Conread position:
               3-381
               

               Cow position:
               chr3:80740723-80740358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               224, 26
               

               Conread position:
               4-336
               

               Cow position:
               chr3:48072717-48073039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 29
               

               Conread position:
               4-355
               

               Cow position:
               chr3:14601533-14601897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               242
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               38, 10
               

               Conread position:
               4-360
               

               Cow position:
               chr3:17221964-17222333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 272
               

               Conread position:
               4-360
               

               Cow position:
               chr3:65969343-65968969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               255
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               5-253
               

               Cow position:
               chr3:59299741-59299493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               133, 75
               

               Conread position:
               5-337
               

               Cow position:
               chr3:73915661-73915970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               229
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               30, 47
               

               Conread position:
               5-360
               

               Cow position:
               chr3:55970683-55970319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               247
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               69, 347
               

               Conread position:
               5-381
               

               Cow position:
               chr3:13329625-13329987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               248
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               229, 64
               

               Conread position:
               5-381
               

               Cow position:
               chr3:15752454-15752842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               258
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               44, 174
               

               Conread position:
               6-183
               

               Cow position:
               chr3:23818654-23818481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               6-204
               

               Cow position:
               chr3:20021435-20021238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               6-267
               

               Cow position:
               chr3:64196992-64196727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 84
               

               Conread position:
               6-310
               

               Cow position:
               chr3:10372423-10372140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               212
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               190, 24
               

               Conread position:
               6-321
               

               Cow position:
               chr3:19682873-19682537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               53, 287
               

               Conread position:
               6-334
               

               Cow position:
               chr3:12978448-12978780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               219
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               69, 111
               

               Conread position:
               6-350
               

               Cow position:
               chr3:70761956-70762302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 152
               

               Conread position:
               6-350
               

               Cow position:
               chr3:76922506-76922842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 60
               

               Conread position:
               6-353
               

               Cow position:
               chr3:79093894-79094230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               243
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               216, 23
               

               Conread position:
               6-355
               

               Cow position:
               chr3:13353531-13353177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 156
               

               Conread position:
               6-355
               

               Cow position:
               chr3:23168901-23169250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 23
               

               Conread position:
               6-355
               

               Cow position:
               chr3:54946288-54945944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 18
               

               Conread position:
               6-355
               

               Cow position:
               chr3:72777400-72777061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               269, 34
               

               Conread position:
               6-371
               

               Cow position:
               chr3:76138626-76138279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               239
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               301, 62
               

               Conread position:
               6-381
               

               Cow position:
               chr3:29813393-29813029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               254
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               332, 56
               

               Conread position:
               6-381
               

               Cow position:
               chr3:38864285-38863903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 57
               

               Conread position:
               6-381
               

               Cow position:
               chr3:45882066-45881695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 227
               

               Conread position:
               6-381
               

               Cow position:
               chr3:51233937-51234310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               258
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               174, 65
               

               Conread position:
               6-381
               

               Cow position:
               chr3:56476841-56476468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               222, 39
               

               Conread position:
               7-312
               

               Cow position:
               chr3:15443560-15443870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               58, 111
               

               Conread position:
               7-355
               

               Cow position:
               chr3:80565128-80564779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               219, 27
               

               Conread position:
               7-357
               

               Cow position:
               chr3:26739258-26739606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               234
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               71, 105
               

               Conread position:
               8-174
               

               Cow position:
               chr3:17531571-17531739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               8-312
               

               Cow position:
               chr3:34871733-34871427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               202
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               57, 122
               

               Conread position:
               8-318
               

               Cow position:
               chr3:79196928-79196612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 250
               

               Conread position:
               8-354
               

               Cow position:
               chr3:52608346-52608004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 82
               

               Conread position:
               8-354
               

               Cow position:
               chr3:59597338-59597002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               237
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               224, 64
               

               Conread position:
               9-170
               

               Cow position:
               chr3:26977701-26977537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               123, 20
               

               Conread position:
               9-171
               

               Cow position:
               chr3:562625-562792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               120
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               9-204
               

               Cow position:
               chr3:73421319-73421524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               9-207
               

               Cow position:
               chr3:22924216-22924409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               9-208
               

               Cow position:
               chr3:18249119-18248917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               9-278
               

               Cow position:
               chr3:9117198-9116920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               40, 168
               

               Conread position:
               9-285
               

               Cow position:
               chr3:45700966-45700692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               224, 81
               

               Conread position:
               9-287
               

               Cow position:
               chr3:58134520-58134804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               9-287
               

               Cow position:
               chr3:58527541-58527281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               9-294
               

               Cow position:
               chr3:48468340-48468059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               69, 115
               

               Conread position:
               9-302
               

               Cow position:
               chr3:15953918-15954218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               9-309
               

               Cow position:
               chr3:72342412-72342106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               56, 85
               

               Conread position:
               9-310
               

               Cow position:
               chr3:17235040-17235348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               214
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               71, 225
               

               Conread position:
               9-312
               

               Cow position:
               chr3:2648344-2648653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               203
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               63, 108
               

               Conread position:
               9-312
               

               Cow position:
               chr3:47417407-47417707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               69, 103
               

               Conread position:
               9-312
               

               Cow position:
               chr3:59040734-59040426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               73, 100
               

               Conread position:
               9-317
               

               Cow position:
               chr3:3889413-3889713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               177, 60
               

               Conread position:
               9-322
               

               Cow position:
               chr3:70333805-70334114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               102, 70
               

               Conread position:
               9-330
               

               Cow position:
               chr3:59035207-59034874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               215
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               9-340
               

               Cow position:
               chr3:23920262-23920599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               220
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               66, 94
               

               Conread position:
               9-341
               

               Cow position:
               chr3:69144860-69144536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               66, 199
               

               Conread position:
               9-349
               

               Cow position:
               chr3:36418323-36418644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               9-350
               

               Cow position:
               chr3:48253043-48252705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               201, 56
               

               Conread position:
               9-352
               

               Cow position:
               chr3:83491244-83490902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               223, 55
               

               Conread position:
               9-354
               

               Cow position:
               chr3:63316291-63315952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               105, 55
               

               Conread position:
               9-354
               

               Cow position:
               chr3:76172518-76172843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               305, 56
               

               Conread position:
               9-355
               

               Cow position:
               chr3:2396631-2396963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               242
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               219, 78
               

               Conread position:
               9-355
               

               Cow position:
               chr3:2506312-2506661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               241
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               61, 127
               

               Conread position:
               9-355
               

               Cow position:
               chr3:13301685-13302032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               237
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               69, 48
               

               Conread position:
               9-355
               

               Cow position:
               chr3:32585317-32584972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 64
               

               Conread position:
               9-355
               

               Cow position:
               chr3:43233667-43233323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               242
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               120, 79
               

               Conread position:
               9-355
               

               Cow position:
               chr3:44932676-44932328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 80
               

               Conread position:
               9-355
               

               Cow position:
               chr3:53150497-53150145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 227
               

               Conread position:
               9-355
               

               Cow position:
               chr3:53318574-53318219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               70, 83
               

               Conread position:
               9-355
               

               Cow position:
               chr3:53384116-53384468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               65, 52
               

               Conread position:
               9-355
               

               Cow position:
               chr3:65237187-65236839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               225
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               219, 70
               

               Conread position:
               9-355
               

               Cow position:
               chr3:67929095-67929448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               59, 48
               

               Conread position:
               9-355
               

               Cow position:
               chr3:68880967-68881296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               9-355
               

               Cow position:
               chr3:70609789-70609442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 36
               

               Conread position:
               9-355
               

               Cow position:
               chr3:83454993-83455332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 16
               

               Conread position:
               9-356
               

               Cow position:
               chr3:6182068-6182385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               9-356
               

               Cow position:
               chr3:61224585-61224918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               211, 63
               

               Conread position:
               9-358
               

               Cow position:
               chr3:19199151-19198800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               232
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               73, 34
               

               Conread position:
               9-360
               

               Cow position:
               chr3:25690964-25690600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               77, 226
               

               Conread position:
               9-360
               

               Cow position:
               chr3:36375374-36375733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               61, 108
               

               Conread position:
               9-360
               

               Cow position:
               chr3:38828915-38828577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               295, 34
               

               Conread position:
               9-360
               

               Cow position:
               chr3:48851803-48852153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               65, 105
               

               Conread position:
               9-360
               

               Cow position:
               chr3:53592522-53592886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               63, 105
               

               Conread position:
               9-360
               

               Cow position:
               chr3:55434495-55434142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               66, 210
               

               Conread position:
               9-360
               

               Cow position:
               chr3:57754311-57754669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               70, 103
               

               Conread position:
               9-360
               

               Cow position:
               chr3:68648341-68647975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               65, 101
               

               Conread position:
               9-360
               

               Cow position:
               chr3:75080916-75080581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               9-361
               

               Cow position:
               chr3:20802476-20802820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               174, 62
               

               Conread position:
               9-361
               

               Cow position:
               chr3:54435132-54434783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               232
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               219, 49
               

               Conread position:
               9-361
               

               Cow position:
               chr3:67698443-67698089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               73, 105
               

               Conread position:
               9-365
               

               Cow position:
               chr3:38035424-38035790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               84, 70
               

               Conread position:
               9-366
               

               Cow position:
               chr3:18067294-18066940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               21, 36
               

               Conread position:
               9-367
               

               Cow position:
               chr3:5044646-5045001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               69, 224
               

               Conread position:
               9-368
               

               Cow position:
               chr3:53875598-53875956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               66, 85
               

               Conread position:
               9-373
               

               Cow position:
               chr3:23105201-23105572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 79
               

               Conread position:
               9-380
               

               Cow position:
               chr3:1830409-1830777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               249
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               69, 94
               

               Conread position:
               9-381
               

               Cow position:
               chr3:2675196-2674815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 103
               

               Conread position:
               9-381
               

               Cow position:
               chr3:3985480-3985116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               215, 55
               

               Conread position:
               9-381
               

               Cow position:
               chr3:17957625-17957252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               250
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               116, 63
               

               Conread position:
               9-381
               

               Cow position:
               chr3:18393238-18393598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 69
               

               Conread position:
               9-381
               

               Cow position:
               chr3:30463012-30463380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               176, 33
               

               Conread position:
               9-381
               

               Cow position:
               chr3:31419859-31419487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               93, 201
               

               Conread position:
               9-381
               

               Cow position:
               chr3:39661290-39661664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               249
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               69, 160
               

               Conread position:
               9-381
               

               Cow position:
               chr3:52651916-52652288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               265
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               60, 89
               

               Conread position:
               9-381
               

               Cow position:
               chr3:54049865-54050233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               251
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               74, 212
               

               Conread position:
               9-381
               

               Cow position:
               chr3:56583012-56582629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               71, 57
               

               Conread position:
               9-381
               

               Cow position:
               chr3:71238314-71237942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               254
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               233, 79
               

               Conread position:
               10-220
               

               Cow position:
               chr3:26603383-26603602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               10-255
               

               Cow position:
               chr3:31349945-31350190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               87, 60
               

               Conread position:
               10-312
               

               Cow position:
               chr3:73820202-73820511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               214
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               67, 19
               

               Conread position:
               10-324
               

               Cow position:
               chr3:19793427-19793746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               66, 106
               

               Conread position:
               10-346
               

               Cow position:
               chr3:55819912-55819572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               54, 70
               

               Conread position:
               10-352
               

               Cow position:
               chr3:53270996-53270647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               67, 108
               

               Conread position:
               10-355
               

               Cow position:
               chr3:51578161-51578503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               59, 82
               

               Conread position:
               10-355
               

               Cow position:
               chr3:69416615-69416968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               104, 69
               

               Conread position:
               10-355
               

               Cow position:
               chr3:74079475-74079823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 81
               

               Conread position:
               10-360
               

               Cow position:
               chr3:58540354-58540718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               72, 143
               

               Conread position:
               10-361
               

               Cow position:
               chr3:60933581-60933225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               77, 263
               

               Conread position:
               10-380
               

               Cow position:
               chr3:66900564-66900955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               72, 15
               

               Conread position:
               10-381
               

               Cow position:
               chr3:2036467-2036084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               153, 107
               

               Conread position:
               10-381
               

               Cow position:
               chr3:53046495-53046871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               258
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               66, 164
               

               Conread position:
               11-184
               

               Cow position:
               chr3:41510740-41510565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               11-208
               

               Cow position:
               chr3:15973732-15973531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               68, 108
               

               Conread position:
               11-315
               

               Cow position:
               chr3:3883658-3883963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 76
               

               Conread position:
               11-328
               

               Cow position:
               chr3:24468222-24468536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               72, 22
               

               Conread position:
               11-338
               

               Cow position:
               chr3:29891244-29891580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               71, 106
               

               Conread position:
               11-355
               

               Cow position:
               chr3:17456105-17456449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               113, 68
               

               Conread position:
               11-360
               

               Cow position:
               chr3:82019680-82020029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               248
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               209, 68
               

               Conread position:
               11-361
               

               Cow position:
               chr3:7566259-7566609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               84, 60
               

               Conread position:
               11-361
               

               Cow position:
               chr3:67520014-67520366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               166, 63
               

               Conread position:
               11-363
               

               Cow position:
               chr3:20674717-20675065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               56, 18
               

               Conread position:
               11-381
               

               Cow position:
               chr3:49460764-49461151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               76, 35
               

               Conread position:
               11-381
               

               Cow position:
               chr3:72474084-72473693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               259
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               11-381
               

               Cow position:
               chr3:77188602-77188228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               63, 102
               

               Conread position:
               12-227
               

               Cow position:
               chr3:53083822-53084042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               169
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               12-236
               

               Cow position:
               chr3:18607824-18607606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               214, 53
               

               Conread position:
               12-297
               

               Cow position:
               chr3:21014795-21015087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               66, 23
               

               Conread position:
               12-329
               

               Cow position:
               chr3:15153849-15153534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               202, 67
               

               Conread position:
               12-345
               

               Cow position:
               chr3:60264561-60264888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               224, 6
               

               Conread position:
               12-361
               

               Cow position:
               chr3:75050462-75050808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               195, 9
               

               Conread position:
               12-380
               

               Cow position:
               chr3:45211465-45211082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               257
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               66, 103
               

               Conread position:
               12-381
               

               Cow position:
               chr3:210483-210109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               250
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               70, 272
               

               Conread position:
               12-381
               

               Cow position:
               chr3:48241768-48241407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               174, 17
               

               Conread position:
               12-384
               

               Cow position:
               chr3:70334531-70334917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               255
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               67, 343
               

               Conread position:
               13-169
               

               Cow position:
               chr3:5737906-5737755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               13-226
               

               Cow position:
               chr3:68004547-68004755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               13-355
               

               Cow position:
               chr3:22232508-22232836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 17
               

               Conread position:
               13-381
               

               Cow position:
               chr3:15159192-15158827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 14
               

               Conread position:
               13-381
               

               Cow position:
               chr3:16752094-16752467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               263
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               69, 152
               

               Conread position:
               13-381
               

               Cow position:
               chr3:53222172-53221800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 76
               

               Conread position:
               13-382
               

               Cow position:
               chr3:11987488-11987115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 65
               

               Conread position:
               14-355
               

               Cow position:
               chr3:54373698-54374045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               242
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               51, 85
               

               Conread position:
               14-381
               

               Cow position:
               chr3:68627528-68627889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 131
               

               Conread position:
               15-381
               

               Cow position:
               chr3:74601270-74600903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               255
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               28, 72
               

               Conread position:
               17-221
               

               Cow position:
               chr3:16505328-16505523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               18-215
               

               Cow position:
               chr3:35239166-35238973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               42, 48
               

               Conread position:
               21-359
               

               Cow position:
               chr3:18185229-18184880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               54, 92
               

               Conread position:
               21-360
               

               Cow position:
               chr3:45279621-45279275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               57, 93
               

               Conread position:
               22-361
               

               Cow position:
               chr3:13890631-13890277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               227
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               52, 92
               

               Conread position:
               22-381
               

               Cow position:
               chr3:72391238-72390866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               249
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               43, 5
               

               Conread position:
               23-352
               

               Cow position:
               chr3:53094778-53095117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               25-346
               

               Cow position:
               chr3:25945243-25944906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               53, 25
               

               Conread position:
               25-381
               

               Cow position:
               chr3:74134855-74134491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               40, 28
               

               Conread position:
               27-194
               

               Cow position:
               chr3:19788685-19788851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               120
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               27-361
               

               Cow position:
               chr3:44102113-44101779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               54, 80
               

               Conread position:
               27-361
               

               Cow position:
               chr3:65413128-65413467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               43, 72
               

               Conread position:
               28-355
               

               Cow position:
               chr3:15388367-15388031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               36, 71
               

               Conread position:
               31-190
               

               Cow position:
               chr3:28870949-28870790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               52, 87
               

               Conread position:
               34-380
               

               Cow position:
               chr3:26681675-26682007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               247
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               6, 57
               

               Conread position:
               36-360
               

               Cow position:
               chr3:14599066-14598761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               97, 36
               

               Conread position:
               36-367
               

               Cow position:
               chr3:11063504-11063187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 79
               

               Conread position:
               36-381
               

               Cow position:
               chr3:77271141-77271481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               231
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               37-272
               

               Cow position:
               chr3:32409356-32409109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               40-275
               

               Cow position:
               chr3:19626374-19626614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               43, 55
               

               Conread position:
               40-381
               

               Cow position:
               chr3:70565601-70565952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 172
               

               Conread position:
               43-355
               

               Cow position:
               chr3:6690133-6689814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               26, 72
               

               Conread position:
               43-355
               

               Cow position:
               chr3:61539934-61539616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               218
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               48, 72
               

               Conread position:
               53-371
               

               Cow position:
               chr3:82461296-82460977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               179, 26
               

               Conread position:
               56-278
               

               Cow position:
               chr3:54290399-54290623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               172, 9
               

               Conread position:
               56-381
               

               Cow position:
               chr3:73461082-73460764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               241
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               167, 34
               

               Conread position:
               57-381
               

               Cow position:
               chr3:73442981-73443301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               234
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               172, 32
               

               Conread position:
               59-361
               

               Cow position:
               chr3:31206989-31206682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               38, 30
               

               Conread position:
               60-361
               

               Cow position:
               chr3:8394054-8393749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               96, 29
               

               Conread position:
               61-355
               

               Cow position:
               chr3:20677729-20678019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 99
               

               Conread position:
               61-361
               

               Cow position:
               chr3:2630883-2630604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               42, 18
               

               Conread position:
               61-381
               

               Cow position:
               chr3:15228713-15229033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               181, 35
               

               Conread position:
               64-354
               

               Cow position:
               chr3:12711809-12712102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               157, 15
               

               Conread position:
               64-355
               

               Cow position:
               chr3:13507576-13507284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               212
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               160, 15
               

               Conread position:
               64-355
               

               Cow position:
               chr3:15506557-15506267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               211
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               156, 90
               

               Conread position:
               64-380
               

               Cow position:
               chr3:59691994-59691691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               44, 15
               

               Conread position:
               64-381
               

               Cow position:
               chr3:27940037-27940342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               293, 15
               

               Conread position:
               64-381
               

               Cow position:
               chr3:73709152-73708834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               168, 15
               

               Conread position:
               65-226
               

               Cow position:
               chr3:82629422-82629263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               65-252
               

               Cow position:
               chr3:4481049-4480858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               158, 27
               

               Conread position:
               65-258
               

               Cow position:
               chr3:22716189-22716389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               65-279
               

               Cow position:
               chr3:15173188-15172972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               151, 25
               

               Conread position:
               65-279
               

               Cow position:
               chr3:55984203-55983986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               158, 14
               

               Conread position:
               65-302
               

               Cow position:
               chr3:84175715-84175957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               65-314
               

               Cow position:
               chr3:1785139-1785385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               161, 31
               

               Conread position:
               65-322
               

               Cow position:
               chr3:62789068-62789331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               193
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               153, 25
               

               Conread position:
               65-332
               

               Cow position:
               chr3:53508718-53508460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               65-339
               

               Cow position:
               chr3:48810541-48810805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               65-346
               

               Cow position:
               chr3:26874698-26874415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 113
               

               Conread position:
               65-354
               

               Cow position:
               chr3:2680618-2680333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               64, 23
               

               Conread position:
               65-355
               

               Cow position:
               chr3:78945732-78946017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               64, 24
               

               Conread position:
               65-356
               

               Cow position:
               chr3:46901303-46901011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               125, 31
               

               Conread position:
               65-361
               

               Cow position:
               chr3:14263497-14263202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               127, 14
               

               Conread position:
               65-361
               

               Cow position:
               chr3:52863078-52863376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               161, 14
               

               Conread position:
               65-378
               

               Cow position:
               chr3:59621541-59621849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               18, 30
               

               Conread position:
               65-379
               

               Cow position:
               chr3:23877105-23876786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               98, 23
               

               Conread position:
               65-381
               

               Cow position:
               chr3:17447510-17447822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 14
               

               Conread position:
               65-381
               

               Cow position:
               chr3:48296803-48296495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               217
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               283, 14
               

               Conread position:
               65-381
               

               Cow position:
               chr3:56059918-56059593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 25
               

               Conread position:
               65-381
               

               Cow position:
               chr3:59630408-59630713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               276, 14
               

               Conread position:
               65-381
               

               Cow position:
               chr3:70899995-70899686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               226
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               58, 14
               

               Conread position:
               65-381
               

               Cow position:
               chr3:81470989-81471315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               160, 14
               

               Conread position:
               66-238
               

               Cow position:
               chr3:21997682-21997853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               17, 33
               

               Conread position:
               66-335
               

               Cow position:
               chr3:59883964-59884237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               65, 30
               

               Conread position:
               66-381
               

               Cow position:
               chr3:67930081-67930391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               221
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               157, 13
               

               Conread position:
               67-220
               

               Cow position:
               chr3:38100248-38100094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               81, 23
               

               Conread position:
               68-360
               

               Cow position:
               chr3:49650491-49650195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               165, 45
               

               Conread position:
               68-379
               

               Cow position:
               chr3:58968797-58969108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 180
               

               Conread position:
               68-381
               

               Cow position:
               chr3:67704652-67704326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               229
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               69-289
               

               Cow position:
               chr3:63177585-63177360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               158, 10
               

               Conread position:
               69-361
               

               Cow position:
               chr3:75045773-75046064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               55, 9
               

               Conread position:
               69-380
               

               Cow position:
               chr3:5100667-5100974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               210
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               24, 157
               

               Conread position:
               70-264
               

               Cow position:
               chr3:2067996-2067799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               137, 20
               

               Conread position:
               70-360
               

               Cow position:
               chr3:63269325-63269036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               155, 33
               

               Conread position:
               70-380
               

               Cow position:
               chr3:59208896-59208601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               221
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               287, 19
               

               Conread position:
               70-381
               

               Cow position:
               chr3:38691306-38691620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               123, 17
               

               Conread position:
               70-381
               

               Cow position:
               chr3:57624568-57624253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               217
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               21, 226
               

               Conread position:
               70-381
               

               Cow position:
               chr3:70401998-70401688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               293, 19
               

               Conread position:
               72-339
               

               Cow position:
               chr3:24935466-24935203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               15, 25
               

               Conread position:
               72-361
               

               Cow position:
               chr3:116290-116007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               44, 17
               

               Conread position:
               72-361
               

               Cow position:
               chr3:81371749-81371457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               206
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               115, 19
               

               Conread position:
               72-381
               

               Cow position:
               chr3:60265152-60265450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               223
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               13, 92
               

               Conread position:
               73-297
               

               Cow position:
               chr3:35621399-35621176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               137, 23
               

               Conread position:
               74-373
               

               Cow position:
               chr3:55271947-55272249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 16
               

               Conread position:
               75-331
               

               Cow position:
               chr3:74243089-74242835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               129, 14
               

               Conread position:
               75-355
               

               Cow position:
               chr3:3738578-3738304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               75-355
               

               Cow position:
               chr3:55835723-55836009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               204
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               76-219
               

               Cow position:
               chr3:41652473-41652330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               104
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               78-360
               

               Cow position:
               chr3:83815695-83815978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               200
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               151, 18
               

               Conread position:
               79-354
               

               Cow position:
               chr3:36671901-36672182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               15, 42
               

               Conread position:
               79-380
               

               Cow position:
               chr3:14626058-14626365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               109, 34
               

               Conread position:
               80-339
               

               Cow position:
               chr3:24352951-24352692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               123, 13
               

               Conread position:
               80-354
               

               Cow position:
               chr3:29887327-29887605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               202
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               107, 56
               

               Conread position:
               80-361
               

               Cow position:
               chr3:13577111-13577376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               80-381
               

               Cow position:
               chr3:19006751-19006453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               13, 77
               

               Conread position:
               80-381
               

               Cow position:
               chr3:25755113-25754822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               45, 69
               

               Conread position:
               81-360
               

               Cow position:
               chr3:62826527-62826808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 67
               

               Conread position:
               82-338
               

               Cow position:
               chr3:30222280-30222018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               91, 14
               

               Conread position:
               82-360
               

               Cow position:
               chr3:2216457-2216174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               148, 49
               

               Conread position:
               82-381
               

               Cow position:
               chr3:80581744-80581457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               226, 14
               

               Conread position:
               83-355
               

               Cow position:
               chr3:50614731-50614453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               138, 0
               

               Conread position:
               83-360
               

               Cow position:
               chr3:64172530-64172256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               142, 171
               

               Conread position:
               83-381
               

               Cow position:
               chr3:525434-525140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               127, 13
               

               Conread position:
               84-227
               

               Cow position:
               chr3:51349912-51349768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               141, 0
               

               Conread position:
               85-356
               

               Cow position:
               chr3:69750623-69750886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               21, 9
               

               Conread position:
               85-360
               

               Cow position:
               chr3:53113261-53112984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               139, 38
               

               Conread position:
               85-361
               

               Cow position:
               chr3:10347443-10347165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 78
               

               Conread position:
               85-367
               

               Cow position:
               chr3:28908115-28908395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               23, 33
               

               Conread position:
               85-381
               

               Cow position:
               chr3:59101913-59101621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               125, 10
               

               Conread position:
               87-353
               

               Cow position:
               chr3:72676177-72675910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               152, 0
               

               Conread position:
               87-366
               

               Cow position:
               chr3:59799334-59799055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               201
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               139, 267
               

               Conread position:
               87-381
               

               Cow position:
               chr3:4032051-4031754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               14, 33
               

               Conread position:
               88-253
               

               Cow position:
               chr3:478716-478883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               137, 7
               

               Conread position:
               89-381
               

               Cow position:
               chr3:66292092-66292393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               139, 164
               

               Conread position:
               95-355
               

               Cow position:
               chr3:45534218-45534480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               133, 68
               

               Conread position:
               96-335
               

               Cow position:
               chr3:26218974-26219214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               125, 200
               

               Conread position:
               98-267
               

               Cow position:
               chr3:3472115-3471941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               121, 103
               

               Conread position:
               98-338
               

               Cow position:
               chr3:55109538-55109782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               125, 228
               

               Conread position:
               98-354
               

               Cow position:
               chr3:11712041-11711773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               190
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               98-354
               

               Cow position:
               chr3:61840350-61840095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               127, 71
               

               Conread position:
               98-360
               

               Cow position:
               chr3:3638253-3637997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               214, 57
               

               Conread position:
               98-381
               

               Cow position:
               chr3:76015366-76015085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               112, 7
               

               Conread position:
               99-361
               

               Cow position:
               chr3:7940483-7940746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               126, 65
               

               Conread position:
               102-355
               

               Cow position:
               chr3:10896893-10896648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               102-355
               

               Cow position:
               chr3:75711377-75711127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               187
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               102-381
               

               Cow position:
               chr3:23444817-23445104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               208
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               108, 166
               

               Conread position:
               110-271
               

               Cow position:
               chr3:12670552-12670716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               113, 31
               

               Conread position:
               110-361
               

               Cow position:
               chr3:79220921-79220660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               110-381
               

               Cow position:
               chr3:20129998-20129728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               199, 114
               

               Conread position:
               115-381
               

               Cow position:
               chr3:66609786-66610052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               118, 58
               

               Conread position:
               116-354
               

               Cow position:
               chr3:34937901-34937660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               67, 39
               

               Conread position:
               116-355
               

               Cow position:
               chr3:74502268-74502506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               192, 131
               

               Conread position:
               116-360
               

               Cow position:
               chr3:55106378-55106628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               116-361
               

               Cow position:
               chr3:33327766-33327514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               79, 104
               

               Conread position:
               116-381
               

               Cow position:
               chr3:26553658-26553926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               79, 98
               

               Conread position:
               117-361
               

               Cow position:
               chr3:34669677-34669918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               75, 81
               

               Conread position:
               117-361
               

               Cow position:
               chr3:68582942-68583193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               117-367
               

               Cow position:
               chr3:56321-56566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               49, 63
               

               Conread position:
               117-373
               

               Cow position:
               chr3:78896703-78896448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               110, 142
               

               Conread position:
               117-381
               

               Cow position:
               chr3:5097263-5096990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               117-381
               

               Cow position:
               chr3:72019172-72018905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               121, 36
               

               Conread position:
               118-355
               

               Cow position:
               chr3:75687381-75687623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               118-355
               

               Cow position:
               chr3:81277637-81277883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               118-360
               

               Cow position:
               chr3:27696923-27697168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               118-360
               

               Cow position:
               chr3:66883888-66884130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               11, 62
               

               Conread position:
               118-381
               

               Cow position:
               chr3:20437601-20437860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               122-381
               

               Cow position:
               chr3:31046901-31047164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               103, 38
               

               Conread position:
               122-381
               

               Cow position:
               chr3:39171435-39171698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               81, 97
               

               Conread position:
               123-355
               

               Cow position:
               chr3:71430154-71430392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               124-356
               

               Cow position:
               chr3:34294219-34294470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               124-380
               

               Cow position:
               chr3:65800634-65800380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               108, 32
               

               Conread position:
               124-381
               

               Cow position:
               chr3:49140000-49140250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               171
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               127-324
               

               Cow position:
               chr3:46541783-46541981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               92, 124
               

               Conread position:
               127-360
               

               Cow position:
               chr3:73759471-73759705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               98, 33
               

               Conread position:
               128-354
               

               Cow position:
               chr3:56523401-56523611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               128-355
               

               Cow position:
               chr3:56301313-56301528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               128-355
               

               Cow position:
               chr3:79092347-79092579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               128-355
               

               Cow position:
               chr3:79270912-79271143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               128-381
               

               Cow position:
               chr3:74878544-74878804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               130-368
               

               Cow position:
               chr3:19708065-19708304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               103, 39
               

               Conread position:
               130-381
               

               Cow position:
               chr3:22820614-22820355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               99, 25
               

               Conread position:
               131-360
               

               Cow position:
               chr3:26960546-26960780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               131-360
               

               Cow position:
               chr3:79591849-79592074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               178, 93
               

               Conread position:
               131-381
               

               Cow position:
               chr3:30055415-30055660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               180, 79
               

               Conread position:
               137-355
               

               Cow position:
               chr3:36446682-36446901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               94, 156
               

               Conread position:
               140-367
               

               Cow position:
               chr3:35005809-35005586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               98, 85
               

               Conread position:
               142-355
               

               Cow position:
               chr3:33698762-33698541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               142-381
               

               Cow position:
               chr3:29807494-29807248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               76, 27
               

               Conread position:
               149-355
               

               Cow position:
               chr3:83201500-83201708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               12, 116
               

               Conread position:
               150-368
               

               Cow position:
               chr3:5850906-5851125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               78, 125
               

               Conread position:
               150-381
               

               Cow position:
               chr3:21340938-21341180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               77, 25
               

               Conread position:
               159-381
               

               Cow position:
               chr3:49793411-49793195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               7, 103
               

               Conread position:
               164-381
               

               Cow position:
               chr3:69849498-69849716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               59, 72
               

               Conread position:
               169-354
               

               Cow position:
               chr3:21693955-21693762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               19, 86
               

               Conread position:
               170-381
               

               Cow position:
               chr3:84000616-84000398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               180-373
               

               Cow position:
               chr3:74409478-74409285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               48, 161
               

               Conread position:
               184-352
               

               Cow position:
               chr3:19789125-19789295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               42, 94
               

               Conread position:
               186-355
               

               Cow position:
               chr3:77496816-77496637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               187-355
               

               Cow position:
               chr3:35283103-35283278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               200-354
               

               Cow position:
               chr3:61190951-61191107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               27, 79
               

               Conread position:
               214-355
               

               Cow position:
               chr3:26894618-26894477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               105
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               218-381
               

               Cow position:
               chr3:73590045-73590213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               234-379
               

               Cow position:
               chr3:61361343-61361195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               241-381
               

               Cow position:
               chr3:58383896-58383754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               112
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               116, 30
               
Show alignments to all cow chromosomes.
Conread position:	1-300
Cow position:	chr3:60389924-60389638 (view UCSC Genome Browser custom track)
Alignm length:	300
Alignm identity:	195
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	49, 0
Conread position:	1-352
Cow position:	chr3:76267802-76268161 (view UCSC Genome Browser custom track)
Alignm length:	364
Alignm identity:	244
Alignm E-value:	3e-37
Alignm gaps (pig, cow):	65, 115
Conread position:	1-356
Cow position:	chr3:57274230-57273881 (view UCSC Genome Browser custom track)
Alignm length:	358
Alignm identity:	254
Alignm E-value:	0
Alignm gaps (pig, cow):	145, 32
Conread position:	1-360
Cow position:	chr3:55124113-55124467 (view UCSC Genome Browser custom track)
Alignm length:	367
Alignm identity:	238
Alignm E-value:	1e-28
Alignm gaps (pig, cow):	86, 29
Conread position:	2-237
Cow position:	chr3:48459158-48459391 (view UCSC Genome Browser custom track)
Alignm length:	237
Alignm identity:	160
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	103, 86
Conread position:	2-240
Cow position:	chr3:75173429-75173647 (view UCSC Genome Browser custom track)
Alignm length:	239
Alignm identity:	168
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	27, 0
Conread position:	2-303
Cow position:	chr3:18059875-18059569 (view UCSC Genome Browser custom track)
Alignm length:	309
Alignm identity:	199
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	76, 107
Conread position:	2-348
Cow position:	chr3:62046842-62046485 (view UCSC Genome Browser custom track)
Alignm length:	361
Alignm identity:	245
Alignm E-value:	3e-39
Alignm gaps (pig, cow):	67, 117
Conread position:	2-355
Cow position:	chr3:31297986-31298340 (view UCSC Genome Browser custom track)
Alignm length:	364
Alignm identity:	233
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	76, 212
Conread position:	2-381
Cow position:	chr3:30180254-30179869 (view UCSC Genome Browser custom track)
Alignm length:	389
Alignm identity:	261
Alignm E-value:	5.04467e-44
Alignm gaps (pig, cow):	195, 77
Conread position:	3-152
Cow position:	chr3:22903588-22903732 (view UCSC Genome Browser custom track)
Alignm length:	150
Alignm identity:	114
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	62, 0
Conread position:	3-167
Cow position:	chr3:19611183-19611346 (view UCSC Genome Browser custom track)
Alignm length:	165
Alignm identity:	117
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	76, 0
Conread position:	3-181
Cow position:	chr3:43895893-43896068 (view UCSC Genome Browser custom track)
Alignm length:	179
Alignm identity:	131
Alignm E-value:	9e-28
Alignm gaps (pig, cow):	76, 0
Conread position:	3-182
Cow position:	chr3:19709275-19709101 (view UCSC Genome Browser custom track)
Alignm length:	180
Alignm identity:	126
Alignm E-value:	4e-21
Alignm gaps (pig, cow):	62, 0
Conread position:	3-188
Cow position:	chr3:8522984-8523165 (view UCSC Genome Browser custom track)
Alignm length:	188
Alignm identity:	138
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	62, 87
Conread position:	3-194
Cow position:	chr3:15160687-15160499 (view UCSC Genome Browser custom track)
Alignm length:	192
Alignm identity:	135
Alignm E-value:	2e-25
Alignm gaps (pig, cow):	76, 0
Conread position:	3-195
Cow position:	chr3:4518014-4518204 (view UCSC Genome Browser custom track)
Alignm length:	195
Alignm identity:	135
Alignm E-value:	4e-21
Alignm gaps (pig, cow):	76, 93
Conread position:	3-199
Cow position:	chr3:67407197-67407392 (view UCSC Genome Browser custom track)
Alignm length:	198
Alignm identity:	143
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	81, 96
Conread position:	3-204
Cow position:	chr3:52845725-52845520 (view UCSC Genome Browser custom track)
Alignm length:	208
Alignm identity:	160
Alignm E-value:	8e-38
Alignm gaps (pig, cow):	77, 94
Conread position:	3-221
Cow position:	chr3:8349401-8349613 (view UCSC Genome Browser custom track)
Alignm length:	221
Alignm identity:	156
Alignm E-value:	8e-27
Alignm gaps (pig, cow):	172, 20