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Cow genome map

           
Conread name:
           
Lym1-jns21_C12.f
        

               
Conread position:
               
1-161
               

               
Cow position:
               
chrX:40556238-40556396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
106, 87
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chrX:3806903-3806698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
107, 95
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chrX:37780887-37781248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 30
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chrX:29601604-29601968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 346
               

               
Conread position:
               
2-221
               

               
Cow position:
               
chrX:43008834-43008612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
75, 113
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chrX:46291365-46291023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
78, 95
               

               
Conread position:
               
2-355
               

               
Cow position:
               
chrX:8869180-8869536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 95
               

               
Conread position:
               
2-355
               

               
Cow position:
               
chrX:14883733-14884092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 89
               

               
Conread position:
               
2-360
               

               
Cow position:
               
chrX:29723975-29723602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
2-360
               

               
Cow position:
               
chrX:30133100-30133464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
2-361
               

               
Cow position:
               
chrX:33855002-33855373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 27
               

               
Conread position:
               
2-375
               

               
Cow position:
               
chrX:20887425-20887804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
222, 28
               

               
Conread position:
               
3-154
               

               
Cow position:
               
chrX:4486801-4486954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
3-157
               

               
Cow position:
               
chrX:14135898-14135745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
3-157
               

               
Cow position:
               
chrX:39642405-39642555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chrX:41215546-41215385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chrX:4750115-4750270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chrX:23497474-23497634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chrX:20666679-20666855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
121, 68
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chrX:42875432-42875258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chrX:46068541-46068716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chrX:34991584-34991400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
80, 96
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chrX:8327128-8326934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 89
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chrX:12966-12783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chrX:41453522-41453328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
80, 96
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chrX:32867093-32866900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chrX:31983355-31983561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chrX:4559957-4559755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
68, 159
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chrX:20583883-20583682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chrX:27074828-27075035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chrX:38302037-38301825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
67, 173
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chrX:40108290-40108503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-213
               

               
Cow position:
               
chrX:29467559-29467767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
71, 86
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chrX:27668739-27668954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
3-224
               

               
Cow position:
               
chrX:2936176-2935957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chrX:42480050-42479831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
32, 22
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chrX:16984858-16984632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
225, 76
               

               
Conread position:
               
3-232
               

               
Cow position:
               
chrX:42894145-42893916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
185, 93
               

               
Conread position:
               
3-255
               

               
Cow position:
               
chrX:28940467-28940212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
82, 250
               

               
Conread position:
               
3-256
               

               
Cow position:
               
chrX:4289657-4289404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
169, 62
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chrX:6599551-6599820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chrX:24749310-24749047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
59, 159
               

               
Conread position:
               
3-263
               

               
Cow position:
               
chrX:2523477-2523720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chrX:22392765-22393035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
82, 94
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chrX:1087925-1088191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
220, 62
               

               
Conread position:
               
3-273
               

               
Cow position:
               
chrX:5134697-5134423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
57, 96
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chrX:12437060-12437327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
223, 56
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chrX:13122167-13121870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 123
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chrX:39352995-39352720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
174, 62
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chrX:41862578-41862326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
3-299
               

               
Cow position:
               
chrX:4152821-4153113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
217, 69
               

               
Conread position:
               
3-301
               

               
Cow position:
               
chrX:39220311-39220000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 279
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chrX:918506-918818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
164, 26
               

               
Conread position:
               
3-312
               

               
Cow position:
               
chrX:29050465-29050156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 38
               

               
Conread position:
               
3-313
               

               
Cow position:
               
chrX:33654620-33654933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
62, 91
               

               
Conread position:
               
3-315
               

               
Cow position:
               
chrX:47345553-47345240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 225
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chrX:9251940-9252263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 208
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chrX:13924084-13923764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
77, 105
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chrX:29230230-29229896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 234
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chrX:30337731-30338055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
62, 94
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chrX:38654209-38654543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 87
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chrX:42927607-42927933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chrX:24332000-24331662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
62, 108
               

               
Conread position:
               
3-341
               

               
Cow position:
               
chrX:26881339-26881688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chrX:7722197-7721859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
222, 26
               

               
Conread position:
               
3-352
               

               
Cow position:
               
chrX:20584535-20584192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 63
               

               
Conread position:
               
3-353
               

               
Cow position:
               
chrX:11656301-11655960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
3-353
               

               
Cow position:
               
chrX:34792100-34792439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chrX:5118275-5118635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 97
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chrX:7695986-7695615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 112
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chrX:38853434-38853065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 172
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:4399341-4398995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
82, 133
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:4996812-4996467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
32, 225
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:10251979-10252314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 155
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:12979612-12979961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 262
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:20339672-20340022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
72, 30
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:21986078-21986426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 61
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:27431701-27432048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:30420744-30421063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
105, 40
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:34314244-34313899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:34412071-34411710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 324
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:35822554-35822208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:36061382-36061021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 76
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:37072609-37072274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 87
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:38094303-38094657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
213, 30
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:38218936-38218577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
105, 76
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:38642465-38642127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
225, 36
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:41878714-41879066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
3-355
               

               
Cow position:
               
chrX:45502358-45502018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
189, 26
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chrX:7351524-7351160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
70, 26
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chrX:11614898-11614560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
229, 27
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chrX:35382819-35383155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chrX:45598385-45598739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
64, 78
               

               
Conread position:
               
3-360
               

               
Cow position:
               
chrX:48237040-48236677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
14, 135
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chrX:9201766-9201406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chrX:27446906-27446548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 107
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chrX:34565508-34565143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
62, 104
               

               
Conread position:
               
3-361
               

               
Cow position:
               
chrX:41871280-41870933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 50
               

               
Conread position:
               
3-370
               

               
Cow position:
               
chrX:45977147-45976771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
3-373
               

               
Cow position:
               
chrX:40826527-40826907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
71, 215
               

               
Conread position:
               
3-376
               

               
Cow position:
               
chrX:36356327-36355956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
76, 116
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chrX:22075018-22074638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 24
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chrX:35224499-35224136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
220, 66
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chrX:6414255-6413881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 26
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chrX:13913298-13912917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
70, 114
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chrX:27207017-27206636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
86, 29
               

               
Conread position:
               
3-380
               

               
Cow position:
               
chrX:35885509-35885893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
219, 76
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:161623-161257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
225, 26
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:1499877-1499505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
76, 90
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:6407767-6407384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 118
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:6544468-6544092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 81
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:11633905-11633514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 204
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:13177261-13177629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 26
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:17795202-17794821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:22482466-22482853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 160
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:27145822-27145459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
348, 69
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:27705810-27705425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
79, 205
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:29542005-29542383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 109
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:31442616-31442986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
232, 62
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:34377162-34376791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:42492298-42492679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:44397234-44396857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 137
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chrX:5637956-5638331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
219, 61
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chrX:1615836-1616178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
210, 57
               

               
Conread position:
               
4-361
               

               
Cow position:
               
chrX:34544008-34543646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
5-178
               

               
Cow position:
               
chrX:11529559-11529392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
5-360
               

               
Cow position:
               
chrX:38549667-38549313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
57, 75
               

               
Conread position:
               
5-381
               

               
Cow position:
               
chrX:6488786-6488422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
234, 47
               

               
Conread position:
               
6-210
               

               
Cow position:
               
chrX:31480186-31479985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
74, 91
               

               
Conread position:
               
6-221
               

               
Cow position:
               
chrX:32208607-32208819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
6-226
               

               
Cow position:
               
chrX:39290575-39290357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
6-263
               

               
Cow position:
               
chrX:11325888-11326142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
210, 65
               

               
Conread position:
               
6-307
               

               
Cow position:
               
chrX:6559236-6559531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
125, 53
               

               
Conread position:
               
6-313
               

               
Cow position:
               
chrX:1466383-1466069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
6-349
               

               
Cow position:
               
chrX:34315747-34315396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
43, 263
               

               
Conread position:
               
6-352
               

               
Cow position:
               
chrX:42855683-42855321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
70, 266
               

               
Conread position:
               
6-353
               

               
Cow position:
               
chrX:40685109-40685463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 95
               

               
Conread position:
               
6-355
               

               
Cow position:
               
chrX:41526314-41526655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 35
               

               
Conread position:
               
6-380
               

               
Cow position:
               
chrX:13191346-13191707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
185, 38
               

               
Conread position:
               
7-161
               

               
Cow position:
               
chrX:39419502-39419651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
7-315
               

               
Cow position:
               
chrX:34836853-34837148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
7-355
               

               
Cow position:
               
chrX:29544667-29545012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 26
               

               
Conread position:
               
8-355
               

               
Cow position:
               
chrX:5872531-5872183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
8-365
               

               
Cow position:
               
chrX:4768946-4768601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
202, 63
               

               
Conread position:
               
8-381
               

               
Cow position:
               
chrX:32821258-32820864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
57, 180
               

               
Conread position:
               
9-141
               

               
Cow position:
               
chrX:31279710-31279841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
9-182
               

               
Cow position:
               
chrX:23471651-23471824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
9-186
               

               
Cow position:
               
chrX:16556006-16556179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
9-187
               

               
Cow position:
               
chrX:6480378-6480559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 170
               

               
Conread position:
               
9-187
               

               
Cow position:
               
chrX:41858667-41858845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
71, 91
               

               
Conread position:
               
9-194
               

               
Cow position:
               
chrX:23358900-23359081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
9-205
               

               
Cow position:
               
chrX:5026468-5026275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
27, 71
               

               
Conread position:
               
9-208
               

               
Cow position:
               
chrX:42449796-42449998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
73, 113
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chrX:16836077-16836294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
216, 70
               

               
Conread position:
               
9-231
               

               
Cow position:
               
chrX:26843049-26843275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
62, 110
               

               
Conread position:
               
9-232
               

               
Cow position:
               
chrX:12972895-12972673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
118, 78
               

               
Conread position:
               
9-255
               

               
Cow position:
               
chrX:17956906-17956661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
56, 81
               

               
Conread position:
               
9-266
               

               
Cow position:
               
chrX:27306656-27306407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
213, 42
               

               
Conread position:
               
9-273
               

               
Cow position:
               
chrX:4109402-4109138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
55, 94
               

               
Conread position:
               
9-273
               

               
Cow position:
               
chrX:35986032-35985766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
9-287
               

               
Cow position:
               
chrX:48004063-48003781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 104
               

               
Conread position:
               
9-300
               

               
Cow position:
               
chrX:22115097-22115396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
9-302
               

               
Cow position:
               
chrX:21328131-21327825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
70, 94
               

               
Conread position:
               
9-302
               

               
Cow position:
               
chrX:48071379-48071080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
9-312
               

               
Cow position:
               
chrX:4296607-4296910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
65, 228
               

               
Conread position:
               
9-315
               

               
Cow position:
               
chrX:12095554-12095868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
57, 85
               

               
Conread position:
               
9-318
               

               
Cow position:
               
chrX:10516471-10516159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
65, 272
               

               
Conread position:
               
9-326
               

               
Cow position:
               
chrX:38560767-38560453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
212, 60
               

               
Conread position:
               
9-332
               

               
Cow position:
               
chrX:17949275-17949601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
69, 118
               

               
Conread position:
               
9-334
               

               
Cow position:
               
chrX:33539368-33539052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
216, 24
               

               
Conread position:
               
9-340
               

               
Cow position:
               
chrX:4403535-4403195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
54, 109
               

               
Conread position:
               
9-340
               

               
Cow position:
               
chrX:18111596-18111271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
74, 218
               

               
Conread position:
               
9-340
               

               
Cow position:
               
chrX:40320624-40320286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
65, 214
               

               
Conread position:
               
9-351
               

               
Cow position:
               
chrX:45875607-45875261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
9-352
               

               
Cow position:
               
chrX:24365605-24365958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
99, 70
               

               
Conread position:
               
9-352
               

               
Cow position:
               
chrX:34504836-34505178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 87
               

               
Conread position:
               
9-353
               

               
Cow position:
               
chrX:5919704-5919364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
9-353
               

               
Cow position:
               
chrX:48262822-48262474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 47
               

               
Conread position:
               
9-354
               

               
Cow position:
               
chrX:21642264-21642611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
73, 117
               

               
Conread position:
               
9-354
               

               
Cow position:
               
chrX:25035164-25035517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
9-354
               

               
Cow position:
               
chrX:25207644-25207976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
299, 87
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chrX:8917612-8917262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
63, 87
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chrX:26493224-26492872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
114, 221
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chrX:41027377-41027023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
69, 109
               

               
Conread position:
               
9-358
               

               
Cow position:
               
chrX:43115366-43115014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 81
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chrX:15006942-15007289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
223, 56
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chrX:22813282-22812925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
55, 201
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chrX:22921538-22921177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
105, 70
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chrX:33001115-33000768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
89, 63
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chrX:38935496-38935146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 108
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chrX:40183137-40183485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 104
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chrX:48010822-48010459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
69, 238
               

               
Conread position:
               
9-361
               

               
Cow position:
               
chrX:1175773-1176119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
229, 44
               

               
Conread position:
               
9-361
               

               
Cow position:
               
chrX:4268853-4269207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
114, 56
               

               
Conread position:
               
9-361
               

               
Cow position:
               
chrX:27508807-27509160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
66, 111
               

               
Conread position:
               
9-365
               

               
Cow position:
               
chrX:869965-870314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 84
               

               
Conread position:
               
9-371
               

               
Cow position:
               
chrX:34454876-34454515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
66, 106
               

               
Conread position:
               
9-373
               

               
Cow position:
               
chrX:11938736-11939083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 63
               

               
Conread position:
               
9-379
               

               
Cow position:
               
chrX:8925897-8925543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
230, 33
               

               
Conread position:
               
9-379
               

               
Cow position:
               
chrX:28846675-28847041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
111, 70
               

               
Conread position:
               
9-379
               

               
Cow position:
               
chrX:46588037-46587655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
70, 47
               

               
Conread position:
               
9-380
               

               
Cow position:
               
chrX:3580162-3579781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
74, 259
               

               
Conread position:
               
9-380
               

               
Cow position:
               
chrX:12290935-12290572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
70, 111
               

               
Conread position:
               
9-380
               

               
Cow position:
               
chrX:27175217-27174832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
35, 104
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chrX:9634975-9635345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
77, 23
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chrX:14973540-14973897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
216, 60
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chrX:20152065-20151686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
198, 56
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chrX:20677581-20677207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 13
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chrX:25815682-25816060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
68, 96
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chrX:30962658-30963036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
61, 107
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chrX:31489738-31489347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 92
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chrX:33466839-33466449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chrX:34554941-34554564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
56, 103
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chrX:38964314-38963942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
75, 34
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chrX:41238145-41238530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
212, 63
               

               
Conread position:
               
9-381
               

               
Cow position:
               
chrX:44055020-44054637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
56, 85
               

               
Conread position:
               
9-382
               

               
Cow position:
               
chrX:15231442-15231823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
66, 89
               

               
Conread position:
               
10-235
               

               
Cow position:
               
chrX:45382845-45383057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
209, 79
               

               
Conread position:
               
10-271
               

               
Cow position:
               
chrX:20957455-20957198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
69, 202
               

               
Conread position:
               
10-354
               

               
Cow position:
               
chrX:8731310-8730950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
68, 114
               

               
Conread position:
               
10-355
               

               
Cow position:
               
chrX:31729653-31729309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
91, 65
               

               
Conread position:
               
10-360
               

               
Cow position:
               
chrX:10831265-10831632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
97, 79
               

               
Conread position:
               
10-360
               

               
Cow position:
               
chrX:23563574-23563932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
68, 105
               

               
Conread position:
               
10-360
               

               
Cow position:
               
chrX:27228345-27227984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
67, 107
               

               
Conread position:
               
10-371
               

               
Cow position:
               
chrX:38208338-38208691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
208, 43
               

               
Conread position:
               
10-380
               

               
Cow position:
               
chrX:4632638-4633014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
67, 114
               

               
Conread position:
               
10-380
               

               
Cow position:
               
chrX:45429814-45430180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
223, 69
               

               
Conread position:
               
10-381
               

               
Cow position:
               
chrX:10865654-10866032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
68, 89
               

               
Conread position:
               
10-381
               

               
Cow position:
               
chrX:16762984-16762608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
119, 62
               

               
Conread position:
               
10-381
               

               
Cow position:
               
chrX:31436685-31436318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 62
               

               
Conread position:
               
10-381
               

               
Cow position:
               
chrX:34441237-34441616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
88, 205
               

               
Conread position:
               
10-381
               

               
Cow position:
               
chrX:37956061-37955673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
10-381
               

               
Cow position:
               
chrX:41192905-41192520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
213, 38
               

               
Conread position:
               
11-233
               

               
Cow position:
               
chrX:4467166-4466957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
212, 42
               

               
Conread position:
               
11-278
               

               
Cow position:
               
chrX:19469300-19469563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
208, 61
               

               
Conread position:
               
11-300
               

               
Cow position:
               
chrX:36866388-36866092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
64, 104
               

               
Conread position:
               
11-307
               

               
Cow position:
               
chrX:40680830-40680525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
11-334
               

               
Cow position:
               
chrX:9650812-9651138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 78
               

               
Conread position:
               
11-355
               

               
Cow position:
               
chrX:45110866-45110525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 68
               

               
Conread position:
               
11-381
               

               
Cow position:
               
chrX:9425547-9425906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
224, 32
               

               
Conread position:
               
11-381
               

               
Cow position:
               
chrX:42246966-42247348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 308
               

               
Conread position:
               
11-381
               

               
Cow position:
               
chrX:42380897-42381264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
12-354
               

               
Cow position:
               
chrX:35273586-35273223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
63, 162
               

               
Conread position:
               
12-354
               

               
Cow position:
               
chrX:47344513-47344165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
74, 287
               

               
Conread position:
               
13-262
               

               
Cow position:
               
chrX:19394768-19394511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
13-355
               

               
Cow position:
               
chrX:18204253-18204597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
13-367
               

               
Cow position:
               
chrX:21593504-21593142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
14-204
               

               
Cow position:
               
chrX:20340446-20340623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
14-360
               

               
Cow position:
               
chrX:12309173-12309524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
68, 108
               

               
Conread position:
               
15-355
               

               
Cow position:
               
chrX:40035228-40035574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 170
               

               
Conread position:
               
16-355
               

               
Cow position:
               
chrX:35543094-35542761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 73
               

               
Conread position:
               
17-307
               

               
Cow position:
               
chrX:35590549-35590843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
25, 30
               

               
Conread position:
               
17-352
               

               
Cow position:
               
chrX:31294360-31294688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
66, 216
               

               
Conread position:
               
17-358
               

               
Cow position:
               
chrX:36393132-36393484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
61, 134
               

               
Conread position:
               
17-381
               

               
Cow position:
               
chrX:31948725-31949095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
65, 265
               

               
Conread position:
               
18-380
               

               
Cow position:
               
chrX:41068928-41068564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
206, 61
               

               
Conread position:
               
19-281
               

               
Cow position:
               
chrX:27511628-27511367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
218, 66
               

               
Conread position:
               
21-360
               

               
Cow position:
               
chrX:47484057-47484407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
21-361
               

               
Cow position:
               
chrX:11844035-11844387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
56, 266
               

               
Conread position:
               
23-355
               

               
Cow position:
               
chrX:13647581-13647919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 240
               

               
Conread position:
               
27-354
               

               
Cow position:
               
chrX:14275549-14275866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
196, 45
               

               
Conread position:
               
27-355
               

               
Cow position:
               
chrX:21672761-21672421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
48, 70
               

               
Conread position:
               
35-299
               

               
Cow position:
               
chrX:4515879-4515606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
48, 64
               

               
Conread position:
               
35-379
               

               
Cow position:
               
chrX:34532709-34532366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 53
               

               
Conread position:
               
36-193
               

               
Cow position:
               
chrX:29687985-29688144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
36-362
               

               
Cow position:
               
chrX:28865814-28866137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
29, 137
               

               
Conread position:
               
36-381
               

               
Cow position:
               
chrX:34662656-34663008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 81
               

               
Conread position:
               
43-355
               

               
Cow position:
               
chrX:31252591-31252284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
32, 93
               

               
Conread position:
               
47-353
               

               
Cow position:
               
chrX:42873555-42873260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 8
               

               
Conread position:
               
53-355
               

               
Cow position:
               
chrX:45175021-45174715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
31, 11
               

               
Conread position:
               
57-355
               

               
Cow position:
               
chrX:32310273-32309975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
15, 10
               

               
Conread position:
               
57-355
               

               
Cow position:
               
chrX:41884246-41884548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 34
               

               
Conread position:
               
57-380
               

               
Cow position:
               
chrX:878214-878536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
171, 32
               

               
Conread position:
               
57-381
               

               
Cow position:
               
chrX:27771802-27772125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
58-360
               

               
Cow position:
               
chrX:46433655-46433347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
60-336
               

               
Cow position:
               
chrX:6265438-6265712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
168, 19
               

               
Conread position:
               
60-355
               

               
Cow position:
               
chrX:38006605-38006898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
60-361
               

               
Cow position:
               
chrX:45414144-45414440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
60-381
               

               
Cow position:
               
chrX:11717622-11717947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
154, 19
               

               
Conread position:
               
64-261
               

               
Cow position:
               
chrX:40531886-40532084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
64-273
               

               
Cow position:
               
chrX:32977927-32978129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
158, 15
               

               
Conread position:
               
64-350
               

               
Cow position:
               
chrX:42235368-42235662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
158, 15
               

               
Conread position:
               
64-355
               

               
Cow position:
               
chrX:33493934-33493644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 24
               

               
Conread position:
               
64-360
               

               
Cow position:
               
chrX:8797408-8797112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
64-380
               

               
Cow position:
               
chrX:36068178-36067856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 248
               

               
Conread position:
               
65-278
               

               
Cow position:
               
chrX:169390-169602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
65-302
               

               
Cow position:
               
chrX:18272901-18273139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
163, 23
               

               
Conread position:
               
65-307
               

               
Cow position:
               
chrX:11317812-11318053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 34
               

               
Conread position:
               
65-311
               

               
Cow position:
               
chrX:16348415-16348658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
156, 42
               

               
Conread position:
               
65-352
               

               
Cow position:
               
chrX:9365520-9365806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
168, 14
               

               
Conread position:
               
65-353
               

               
Cow position:
               
chrX:42171140-42171428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
163, 10
               

               
Conread position:
               
65-355
               

               
Cow position:
               
chrX:618850-619138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
163, 61
               

               
Conread position:
               
65-355
               

               
Cow position:
               
chrX:6278342-6278636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
156, 14
               

               
Conread position:
               
65-355
               

               
Cow position:
               
chrX:40269650-40269354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
65-360
               

               
Cow position:
               
chrX:14599688-14599394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
65-360
               

               
Cow position:
               
chrX:34503078-34502783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
174, 24
               

               
Conread position:
               
65-361
               

               
Cow position:
               
chrX:29680104-29680400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
143, 48
               

               
Conread position:
               
65-365
               

               
Cow position:
               
chrX:616100-616407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
65-375
               

               
Cow position:
               
chrX:11084905-11085213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
244, 73
               

               
Conread position:
               
65-380
               

               
Cow position:
               
chrX:9416530-9416856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
112, 23
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chrX:5017263-5017572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
114, 59
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chrX:6690104-6690412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
165, 22
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chrX:17726134-17725810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chrX:24424245-24424552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
267, 23
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chrX:27393870-27394178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 14
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chrX:28878018-28878323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chrX:34402162-34401833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chrX:37489874-37489566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
249, 22
               

               
Conread position:
               
65-381
               

               
Cow position:
               
chrX:43730066-43730379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
159, 25
               

               
Conread position:
               
67-300
               

               
Cow position:
               
chrX:23562788-23562556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
69-381
               

               
Cow position:
               
chrX:40557524-40557840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 299
               

               
Conread position:
               
69-382
               

               
Cow position:
               
chrX:7513636-7513349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
288, 19
               

               
Conread position:
               
70-355
               

               
Cow position:
               
chrX:31312184-31311895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 200
               

               
Conread position:
               
70-360
               

               
Cow position:
               
chrX:45846254-45845960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
154, 20
               

               
Conread position:
               
70-381
               

               
Cow position:
               
chrX:42469789-42470101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
109, 26
               

               
Conread position:
               
72-303
               

               
Cow position:
               
chrX:5135369-5135607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
72-339
               

               
Cow position:
               
chrX:5679423-5679684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
160, 7
               

               
Conread position:
               
72-354
               

               
Cow position:
               
chrX:22387099-22387376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
237, 17
               

               
Conread position:
               
73-354
               

               
Cow position:
               
chrX:17042831-17042559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
73-381
               

               
Cow position:
               
chrX:23092021-23091717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
76, 6
               

               
Conread position:
               
78-354
               

               
Cow position:
               
chrX:38066309-38066583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
147, 176
               

               
Conread position:
               
79-287
               

               
Cow position:
               
chrX:12082179-12082391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
140, 85
               

               
Conread position:
               
80-356
               

               
Cow position:
               
chrX:17964378-17964654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
207, 146
               

               
Conread position:
               
80-381
               

               
Cow position:
               
chrX:11073049-11073353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
147, 16
               

               
Conread position:
               
81-273
               

               
Cow position:
               
chrX:25328474-25328658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
81-355
               

               
Cow position:
               
chrX:10959254-10959531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
127, 20
               

               
Conread position:
               
81-358
               

               
Cow position:
               
chrX:37986366-37986096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
147, 17
               

               
Conread position:
               
81-363
               

               
Cow position:
               
chrX:1503468-1503196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
144, 15
               

               
Conread position:
               
82-248
               

               
Cow position:
               
chrX:4615869-4616036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
82-283
               

               
Cow position:
               
chrX:46429679-46429883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
138, 14
               

               
Conread position:
               
82-355
               

               
Cow position:
               
chrX:17662458-17662727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
25, 11
               

               
Conread position:
               
82-364
               

               
Cow position:
               
chrX:32431766-32431484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
82-367
               

               
Cow position:
               
chrX:39415228-39415516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
132, 194
               

               
Conread position:
               
84-360
               

               
Cow position:
               
chrX:25338328-25338044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
5, 29
               

               
Conread position:
               
87-361
               

               
Cow position:
               
chrX:47481933-47481659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
152, 84
               

               
Conread position:
               
89-355
               

               
Cow position:
               
chrX:10411849-10412119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 199
               

               
Conread position:
               
89-362
               

               
Cow position:
               
chrX:48014570-48014300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
133, 178
               

               
Conread position:
               
89-379
               

               
Cow position:
               
chrX:11082487-11082776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 9
               

               
Conread position:
               
89-381
               

               
Cow position:
               
chrX:29121182-29120892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
131, 267
               

               
Conread position:
               
90-355
               

               
Cow position:
               
chrX:37232541-37232279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
90-357
               

               
Cow position:
               
chrX:7162190-7161924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
135, 73
               

               
Conread position:
               
91-381
               

               
Cow position:
               
chrX:35413744-35413468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 80
               

               
Conread position:
               
92-352
               

               
Cow position:
               
chrX:19273575-19273854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
94-381
               

               
Cow position:
               
chrX:18694801-18695084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
138, 61
               

               
Conread position:
               
94-381
               

               
Cow position:
               
chrX:37574970-37574692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
98-257
               

               
Cow position:
               
chrX:29585245-29585084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
98-340
               

               
Cow position:
               
chrX:11851553-11851788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 26
               

               
Conread position:
               
98-381
               

               
Cow position:
               
chrX:39558223-39558511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
133, 38
               

               
Conread position:
               
108-371
               

               
Cow position:
               
chrX:7572021-7571752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 206
               

               
Conread position:
               
110-355
               

               
Cow position:
               
chrX:2467998-2467749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
114, 147
               

               
Conread position:
               
113-355
               

               
Cow position:
               
chrX:7509250-7509008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
116, 37
               

               
Conread position:
               
116-354
               

               
Cow position:
               
chrX:26625563-26625806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
136, 104
               

               
Conread position:
               
116-360
               

               
Cow position:
               
chrX:21566515-21566263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
116-360
               

               
Cow position:
               
chrX:38936808-38936561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
68, 62
               

               
Conread position:
               
116-381
               

               
Cow position:
               
chrX:23513909-23514179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 54
               

               
Conread position:
               
117-360
               

               
Cow position:
               
chrX:31340817-31340569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
87, 16
               

               
Conread position:
               
117-367
               

               
Cow position:
               
chrX:7646358-7646110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
96, 107
               

               
Conread position:
               
117-381
               

               
Cow position:
               
chrX:7497349-7497079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
92, 16
               

               
Conread position:
               
122-381
               

               
Cow position:
               
chrX:755066-754794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
123-360
               

               
Cow position:
               
chrX:27685350-27685108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
124-355
               

               
Cow position:
               
chrX:36961740-36961505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
124-360
               

               
Cow position:
               
chrX:43779747-43779987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
107, 99
               

               
Conread position:
               
124-360
               

               
Cow position:
               
chrX:45993330-45993084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
24, 194
               

               
Conread position:
               
124-381
               

               
Cow position:
               
chrX:11856530-11856264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
108, 150
               

               
Conread position:
               
125-355
               

               
Cow position:
               
chrX:47145184-47144961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
127-373
               

               
Cow position:
               
chrX:27680495-27680245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
83, 154
               

               
Conread position:
               
128-381
               

               
Cow position:
               
chrX:21004780-21004517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
88, 141
               

               
Conread position:
               
128-381
               

               
Cow position:
               
chrX:29289674-29289412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 156
               

               
Conread position:
               
128-381
               

               
Cow position:
               
chrX:43527604-43527339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
104, 89
               

               
Conread position:
               
131-341
               

               
Cow position:
               
chrX:27119790-27119579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
100, 142
               

               
Conread position:
               
131-359
               

               
Cow position:
               
chrX:15815177-15814949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
83, 146
               

               
Conread position:
               
131-360
               

               
Cow position:
               
chrX:45403732-45403969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
131-361
               

               
Cow position:
               
chrX:48194942-48195181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
105, 93
               

               
Conread position:
               
131-381
               

               
Cow position:
               
chrX:37843810-37843556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
98, 14
               

               
Conread position:
               
131-381
               

               
Cow position:
               
chrX:40809786-40809522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 101
               

               
Conread position:
               
137-354
               

               
Cow position:
               
chrX:48385276-48385493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
57, 16
               

               
Conread position:
               
143-355
               

               
Cow position:
               
chrX:11589507-11589722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chrX:19003372-19003174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
150-381
               

               
Cow position:
               
chrX:13785286-13785522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
79, 217
               

               
Conread position:
               
151-381
               

               
Cow position:
               
chrX:6234376-6234613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
154-381
               

               
Cow position:
               
chrX:26875811-26876047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
160-381
               

               
Cow position:
               
chrX:34192734-34192512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
65, 49
               

               
Conread position:
               
164-381
               

               
Cow position:
               
chrX:41166902-41167129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
165-402
               

               
Cow position:
               
chrX:41991986-41992227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 85
               

               
Conread position:
               
169-360
               

               
Cow position:
               
chrX:42875038-42874842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
169-379
               

               
Cow position:
               
chrX:34991091-34990878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
174-354
               

               
Cow position:
               
chrX:35681392-35681205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
174-354
               

               
Cow position:
               
chrX:40452168-40452342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
174-360
               

               
Cow position:
               
chrX:42994663-42994477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 118
               

               
Conread position:
               
174-381
               

               
Cow position:
               
chrX:19015487-19015278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 84
               

               
Conread position:
               
174-384
               

               
Cow position:
               
chrX:15139497-15139712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
187-355
               

               
Cow position:
               
chrX:38439518-38439344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
190-381
               

               
Cow position:
               
chrX:30832818-30833010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
150, 78
               

               
Conread position:
               
197-381
               

               
Cow position:
               
chrX:45015603-45015422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
107, 158
               

               
Conread position:
               
198-381
               

               
Cow position:
               
chrX:17908262-17908448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
202-381
               

               
Cow position:
               
chrX:4750281-4750468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
202-381
               

               
Cow position:
               
chrX:20583044-20582866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
214-373
               

               
Cow position:
               
chrX:34270408-34270250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
97, 43
               

               
Conread position:
               
215-361
               

               
Cow position:
               
chrX:41743918-41743772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
93, 135
               

               
Conread position:
               
220-354
               

               
Cow position:
               
chrX:11806012-11806146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
223-360
               

               
Cow position:
               
chrX:14003643-14003780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
223-381
               

               
Cow position:
               
chrX:35284617-35284459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 13
               

               
Conread position:
               
234-355
               

               
Cow position:
               
chrX:35387915-35388036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
234-380
               

               
Cow position:
               
chrX:14924988-14924836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
237-380
               

               
Cow position:
               
chrX:45759376-45759234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
249-381
               

               
Cow position:
               
chrX:9997363-9997498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               
Show alignments to all cow chromosomes.