• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Lym1-jns24_F09.f
        

               
Conread position:
               
1-284
               

               
Cow position:
               
chr28:32366062-32366345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr28:31649271-31648841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
2-328
               

               
Cow position:
               
chr28:4764065-4763722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 74
               

               
Conread position:
               
2-347
               

               
Cow position:
               
chr28:32366025-32365675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
66, 35
               

               
Conread position:
               
2-359
               

               
Cow position:
               
chr28:6643092-6643463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 122
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr28:4938991-4938592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
25, 118
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr28:20124988-20124539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 287
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr28:17624983-17625380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr28:23676320-23675898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 68
               

               
Conread position:
               
5-263
               

               
Cow position:
               
chr28:7539972-7540247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 250
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chr28:19564030-19564338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
8, 268
               

               
Conread position:
               
5-299
               

               
Cow position:
               
chr28:5193528-5193196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 290
               

               
Conread position:
               
5-325
               

               
Cow position:
               
chr28:21046385-21046720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
66, 208
               

               
Conread position:
               
5-339
               

               
Cow position:
               
chr28:8291617-8291269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
71, 276
               

               
Conread position:
               
5-363
               

               
Cow position:
               
chr28:11866463-11866855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 258
               

               
Conread position:
               
5-367
               

               
Cow position:
               
chr28:23724265-23724645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 238
               

               
Conread position:
               
5-374
               

               
Cow position:
               
chr28:21570361-21569991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
150, 36
               

               
Conread position:
               
5-415
               

               
Cow position:
               
chr28:25825680-25826108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
64, 324
               

               
Conread position:
               
5-420
               

               
Cow position:
               
chr28:5074317-5074739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
66, 275
               

               
Conread position:
               
5-420
               

               
Cow position:
               
chr28:13267973-13267539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 271
               

               
Conread position:
               
5-423
               

               
Cow position:
               
chr28:26719534-26719115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 216
               

               
Conread position:
               
5-424
               

               
Cow position:
               
chr28:5827135-5826702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 88
               

               
Conread position:
               
5-424
               

               
Cow position:
               
chr28:11426344-11426791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 280
               

               
Conread position:
               
5-424
               

               
Cow position:
               
chr28:24996414-24996834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 126
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr28:21502586-21502147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 42
               

               
Conread position:
               
6-340
               

               
Cow position:
               
chr28:33284925-33285281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
62, 93
               

               
Conread position:
               
6-422
               

               
Cow position:
               
chr28:24343555-24343125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 10
               

               
Conread position:
               
6-424
               

               
Cow position:
               
chr28:23007539-23007974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 277
               

               
Conread position:
               
6-424
               

               
Cow position:
               
chr28:26615056-26614649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 149
               

               
Conread position:
               
8-127
               

               
Cow position:
               
chr28:26703896-26704013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
8-254
               

               
Cow position:
               
chr28:9237496-9237235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 95
               

               
Conread position:
               
8-424
               

               
Cow position:
               
chr28:21598065-21598499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 51
               

               
Conread position:
               
11-210
               

               
Cow position:
               
chr28:2762370-2762163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
11-406
               

               
Cow position:
               
chr28:33163278-33163696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 268
               

               
Conread position:
               
11-420
               

               
Cow position:
               
chr28:25249533-25249113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 40
               

               
Conread position:
               
11-424
               

               
Cow position:
               
chr28:7865503-7865082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 63
               

               
Conread position:
               
12-424
               

               
Cow position:
               
chr28:9176581-9177000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
86, 46
               

               
Conread position:
               
13-426
               

               
Cow position:
               
chr28:25564260-25563828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 93
               

               
Conread position:
               
15-408
               

               
Cow position:
               
chr28:9100122-9099704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 13
               

               
Conread position:
               
15-424
               

               
Cow position:
               
chr28:23410140-23410570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 267
               

               
Conread position:
               
16-198
               

               
Cow position:
               
chr28:26372914-26372723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 189
               

               
Conread position:
               
16-253
               

               
Cow position:
               
chr28:3160781-3161032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
16-424
               

               
Cow position:
               
chr28:616562-616157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 261
               

               
Conread position:
               
16-424
               

               
Cow position:
               
chr28:20963354-20963778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 259
               

               
Conread position:
               
17-422
               

               
Cow position:
               
chr28:13866015-13865601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 100
               

               
Conread position:
               
17-424
               

               
Cow position:
               
chr28:3914897-3914464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 268
               

               
Conread position:
               
17-424
               

               
Cow position:
               
chr28:11451313-11451713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 61
               

               
Conread position:
               
19-398
               

               
Cow position:
               
chr28:5188240-5188622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
61, 115
               

               
Conread position:
               
21-280
               

               
Cow position:
               
chr28:32370702-32370979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
59, 29
               

               
Conread position:
               
26-287
               

               
Cow position:
               
chr28:17601710-17601986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
51, 211
               

               
Conread position:
               
28-426
               

               
Cow position:
               
chr28:30303027-30303441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 241
               

               
Conread position:
               
40-426
               

               
Cow position:
               
chr28:32300211-32300608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
100, 77
               

               
Conread position:
               
41-424
               

               
Cow position:
               
chr28:28765759-28766156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
111, 17
               

               
Conread position:
               
44-406
               

               
Cow position:
               
chr28:10606493-10606848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
101, 14
               

               
Conread position:
               
44-424
               

               
Cow position:
               
chr28:8787683-8787304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
44-424
               

               
Cow position:
               
chr28:13474442-13474060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 224
               

               
Conread position:
               
44-424
               

               
Cow position:
               
chr28:26103842-26103469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 13
               

               
Conread position:
               
45-424
               

               
Cow position:
               
chr28:5684843-5684458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 44
               

               
Conread position:
               
50-422
               

               
Cow position:
               
chr28:11527124-11527500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
103, 21
               

               
Conread position:
               
51-424
               

               
Cow position:
               
chr28:34561477-34561112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
86, 13
               

               
Conread position:
               
63-426
               

               
Cow position:
               
chr28:4536587-4536222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 212
               

               
Conread position:
               
64-403
               

               
Cow position:
               
chr28:24018105-24017781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
64-424
               

               
Cow position:
               
chr28:7548936-7549308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 206
               

               
Conread position:
               
65-288
               

               
Cow position:
               
chr28:23447714-23447936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
65-424
               

               
Cow position:
               
chr28:18591391-18591024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
72, 184
               

               
Conread position:
               
70-375
               

               
Cow position:
               
chr28:4809896-4809596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
13, 110
               

               
Conread position:
               
70-411
               

               
Cow position:
               
chr28:16204219-16204567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
70-420
               

               
Cow position:
               
chr28:4841274-4841639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 185
               

               
Conread position:
               
70-423
               

               
Cow position:
               
chr28:25806691-25806344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
34, 198
               

               
Conread position:
               
71-258
               

               
Cow position:
               
chr28:4182116-4181920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
71-324
               

               
Cow position:
               
chr28:30746614-30746879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 162
               

               
Conread position:
               
71-352
               

               
Cow position:
               
chr28:4643655-4643939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
69, 154
               

               
Conread position:
               
71-407
               

               
Cow position:
               
chr28:751340-750997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
76, 44
               

               
Conread position:
               
71-419
               

               
Cow position:
               
chr28:11422701-11423045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 199
               

               
Conread position:
               
71-419
               

               
Cow position:
               
chr28:22332643-22332308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 93
               

               
Conread position:
               
71-419
               

               
Cow position:
               
chr28:22346136-22345778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 173
               

               
Conread position:
               
71-424
               

               
Cow position:
               
chr28:8021988-8022357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
71-424
               

               
Cow position:
               
chr28:23621652-23621302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
93, 49
               

               
Conread position:
               
71-424
               

               
Cow position:
               
chr28:30326978-30327327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
65, 14
               

               
Conread position:
               
73-263
               

               
Cow position:
               
chr28:25677228-25677434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
77, 203
               

               
Conread position:
               
73-267
               

               
Cow position:
               
chr28:8147751-8147953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
75, 51
               

               
Conread position:
               
73-286
               

               
Cow position:
               
chr28:17398121-17398335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 104
               

               
Conread position:
               
73-286
               

               
Cow position:
               
chr28:17414362-17414576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 104
               

               
Conread position:
               
73-287
               

               
Cow position:
               
chr28:18369903-18370118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
99, 61
               

               
Conread position:
               
73-297
               

               
Cow position:
               
chr28:11079414-11079185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 7
               

               
Conread position:
               
73-300
               

               
Cow position:
               
chr28:12672351-12672585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
27, 193
               

               
Conread position:
               
73-315
               

               
Cow position:
               
chr28:27161214-27161472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
80, 47
               

               
Conread position:
               
73-376
               

               
Cow position:
               
chr28:4138558-4138868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
67, 139
               

               
Conread position:
               
73-416
               

               
Cow position:
               
chr28:18354214-18354556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 76
               

               
Conread position:
               
73-422
               

               
Cow position:
               
chr28:16085438-16085080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 170
               

               
Conread position:
               
73-422
               

               
Cow position:
               
chr28:34877869-34878217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
73-423
               

               
Cow position:
               
chr28:4282378-4282737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 193
               

               
Conread position:
               
73-424
               

               
Cow position:
               
chr28:7684591-7684923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 73
               

               
Conread position:
               
73-424
               

               
Cow position:
               
chr28:8408847-8408490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 195
               

               
Conread position:
               
73-424
               

               
Cow position:
               
chr28:14934071-14933716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 111
               

               
Conread position:
               
73-424
               

               
Cow position:
               
chr28:26533656-26533296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 133
               

               
Conread position:
               
73-424
               

               
Cow position:
               
chr28:27218435-27218074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 55
               

               
Conread position:
               
74-255
               

               
Cow position:
               
chr28:7350766-7350577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 151
               

               
Conread position:
               
74-279
               

               
Cow position:
               
chr28:11307407-11307611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
74-364
               

               
Cow position:
               
chr28:11828850-11829129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
63, 119
               

               
Conread position:
               
74-381
               

               
Cow position:
               
chr28:4089946-4090248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
93, 134
               

               
Conread position:
               
74-403
               

               
Cow position:
               
chr28:4016643-4016304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 153
               

               
Conread position:
               
74-410
               

               
Cow position:
               
chr28:2131812-2132155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
79, 170
               

               
Conread position:
               
74-412
               

               
Cow position:
               
chr28:3746314-3745967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
79, 165
               

               
Conread position:
               
74-415
               

               
Cow position:
               
chr28:9285265-9285615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 62
               

               
Conread position:
               
74-417
               

               
Cow position:
               
chr28:9636345-9636696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 191
               

               
Conread position:
               
74-424
               

               
Cow position:
               
chr28:2960718-2961068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
81, 189
               

               
Conread position:
               
74-424
               

               
Cow position:
               
chr28:3492672-3493030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 194
               

               
Conread position:
               
74-424
               

               
Cow position:
               
chr28:5204307-5203956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 197
               

               
Conread position:
               
74-424
               

               
Cow position:
               
chr28:14235064-14234728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
79, 42
               

               
Conread position:
               
74-424
               

               
Cow position:
               
chr28:14998178-14997818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
74-424
               

               
Cow position:
               
chr28:16369971-16370320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
84, 120
               

               
Conread position:
               
74-424
               

               
Cow position:
               
chr28:24966499-24966142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 192
               

               
Conread position:
               
74-424
               

               
Cow position:
               
chr28:25596740-25596386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 194
               

               
Conread position:
               
74-425
               

               
Cow position:
               
chr28:15043750-15044102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
63, 168
               

               
Conread position:
               
74-426
               

               
Cow position:
               
chr28:5817954-5817599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 133
               

               
Conread position:
               
74-426
               

               
Cow position:
               
chr28:33052148-33051772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 10
               

               
Conread position:
               
74-426
               

               
Cow position:
               
chr28:34133973-34133616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
76, 161
               

               
Conread position:
               
75-424
               

               
Cow position:
               
chr28:6971237-6971585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
78, 89
               

               
Conread position:
               
75-424
               

               
Cow position:
               
chr28:21868568-21868206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 155
               

               
Conread position:
               
76-376
               

               
Cow position:
               
chr28:4159065-4158753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
77, 170
               

               
Conread position:
               
76-424
               

               
Cow position:
               
chr28:26922258-26922610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 191
               

               
Conread position:
               
78-215
               

               
Cow position:
               
chr28:32179801-32179655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
78-241
               

               
Cow position:
               
chr28:7437364-7437526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
78-246
               

               
Cow position:
               
chr28:20759594-20759775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
78-270
               

               
Cow position:
               
chr28:7388664-7388861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
67, 186
               

               
Conread position:
               
78-270
               

               
Cow position:
               
chr28:10297959-10297765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
78-288
               

               
Cow position:
               
chr28:3011162-3011385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
78-288
               

               
Cow position:
               
chr28:5166875-5166654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 190
               

               
Conread position:
               
78-288
               

               
Cow position:
               
chr28:7372014-7372233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
85, 189
               

               
Conread position:
               
78-308
               

               
Cow position:
               
chr28:8140590-8140350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
75, 150
               

               
Conread position:
               
78-315
               

               
Cow position:
               
chr28:4355654-4355416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
78-333
               

               
Cow position:
               
chr28:1632549-1632815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
75, 229
               

               
Conread position:
               
78-341
               

               
Cow position:
               
chr28:32174737-32174470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
75, 94
               

               
Conread position:
               
78-343
               

               
Cow position:
               
chr28:657367-657618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
234, 67
               

               
Conread position:
               
78-343
               

               
Cow position:
               
chr28:21363848-21363576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 73
               

               
Conread position:
               
78-363
               

               
Cow position:
               
chr28:6091472-6091174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 182
               

               
Conread position:
               
78-369
               

               
Cow position:
               
chr28:26982630-26982938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 189
               

               
Conread position:
               
78-372
               

               
Cow position:
               
chr28:4881132-4881440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 125
               

               
Conread position:
               
78-403
               

               
Cow position:
               
chr28:1838093-1837767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
78-404
               

               
Cow position:
               
chr28:8347839-8347508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 190
               

               
Conread position:
               
78-406
               

               
Cow position:
               
chr28:16407192-16406858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
78-408
               

               
Cow position:
               
chr28:12951525-12951202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
78-409
               

               
Cow position:
               
chr28:5144413-5144754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 166
               

               
Conread position:
               
78-419
               

               
Cow position:
               
chr28:4307789-4308139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 195
               

               
Conread position:
               
78-421
               

               
Cow position:
               
chr28:5128620-5128970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
78-421
               

               
Cow position:
               
chr28:13176581-13176922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 81
               

               
Conread position:
               
78-422
               

               
Cow position:
               
chr28:10172309-10172658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 46
               

               
Conread position:
               
78-423
               

               
Cow position:
               
chr28:21355339-21354979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 118
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr28:2899097-2898749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 125
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr28:6059362-6059719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 187
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr28:7267838-7268182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 122
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr28:11752031-11752391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 186
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr28:15601383-15601018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
70, 190
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr28:19025897-19026249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 199
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr28:19222043-19222391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 113
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr28:20313385-20313029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 192
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr28:22321527-22321176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 92
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr28:24672372-24672027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr28:26743734-26743376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 193
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr28:29434320-29434671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
59, 182
               

               
Conread position:
               
79-305
               

               
Cow position:
               
chr28:11346380-11346614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 145
               

               
Conread position:
               
79-308
               

               
Cow position:
               
chr28:1538268-1538036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
76, 25
               

               
Conread position:
               
79-424
               

               
Cow position:
               
chr28:5236497-5236846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
58, 185
               

               
Conread position:
               
79-424
               

               
Cow position:
               
chr28:9426244-9426588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
80-263
               

               
Cow position:
               
chr28:30865523-30865331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 170
               

               
Conread position:
               
80-278
               

               
Cow position:
               
chr28:34247923-34248125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 144
               

               
Conread position:
               
80-308
               

               
Cow position:
               
chr28:7008872-7009107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
73, 187
               

               
Conread position:
               
80-333
               

               
Cow position:
               
chr28:18759949-18760207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
59, 38
               

               
Conread position:
               
80-405
               

               
Cow position:
               
chr28:10053219-10053566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
73, 196
               

               
Conread position:
               
80-413
               

               
Cow position:
               
chr28:11884415-11884758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 186
               

               
Conread position:
               
80-422
               

               
Cow position:
               
chr28:5931458-5931109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 188
               

               
Conread position:
               
80-422
               

               
Cow position:
               
chr28:23793203-23793545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 24
               

               
Conread position:
               
80-424
               

               
Cow position:
               
chr28:7228284-7228629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 12
               

               
Conread position:
               
80-424
               

               
Cow position:
               
chr28:7697876-7698227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 185
               

               
Conread position:
               
80-424
               

               
Cow position:
               
chr28:10529384-10529729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 123
               

               
Conread position:
               
80-424
               

               
Cow position:
               
chr28:10615841-10616197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
67, 9
               

               
Conread position:
               
80-424
               

               
Cow position:
               
chr28:23230978-23231312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
80-426
               

               
Cow position:
               
chr28:16386413-16386754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 10
               

               
Conread position:
               
81-291
               

               
Cow position:
               
chr28:25128991-25128768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 60
               

               
Conread position:
               
81-343
               

               
Cow position:
               
chr28:20409492-20409222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
74, 49
               

               
Conread position:
               
81-343
               

               
Cow position:
               
chr28:25728299-25728035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 184
               

               
Conread position:
               
81-385
               

               
Cow position:
               
chr28:5436984-5437299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
72, 25
               

               
Conread position:
               
81-424
               

               
Cow position:
               
chr28:11786612-11786954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 90
               

               
Conread position:
               
81-424
               

               
Cow position:
               
chr28:16210996-16211343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
70, 83
               

               
Conread position:
               
81-424
               

               
Cow position:
               
chr28:25727477-25727135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
72, 165
               

               
Conread position:
               
82-378
               

               
Cow position:
               
chr28:14512637-14512325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 198
               

               
Conread position:
               
82-404
               

               
Cow position:
               
chr28:26685220-26684886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
82-426
               

               
Cow position:
               
chr28:14494927-14494584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 19
               

               
Conread position:
               
83-424
               

               
Cow position:
               
chr28:2814406-2814745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
83, 184
               

               
Conread position:
               
83-424
               

               
Cow position:
               
chr28:13693852-13693503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
12, 7
               

               
Conread position:
               
86-229
               

               
Cow position:
               
chr28:4823704-4823552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
86-327
               

               
Cow position:
               
chr28:18186656-18186403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
69, 184
               

               
Conread position:
               
96-364
               

               
Cow position:
               
chr28:11762785-11762507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 7
               

               
Conread position:
               
96-411
               

               
Cow position:
               
chr28:21380972-21380644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 176
               

               
Conread position:
               
99-389
               

               
Cow position:
               
chr28:12947036-12946726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
52, 145
               

               
Conread position:
               
99-412
               

               
Cow position:
               
chr28:26340419-26340102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
55, 67
               

               
Conread position:
               
99-424
               

               
Cow position:
               
chr28:7512497-7512838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 172
               

               
Conread position:
               
99-424
               

               
Cow position:
               
chr28:15272186-15272507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
56, 91
               

               
Conread position:
               
100-424
               

               
Cow position:
               
chr28:10745300-10744963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 130
               

               
Conread position:
               
100-424
               

               
Cow position:
               
chr28:11759477-11759783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 71
               

               
Conread position:
               
101-330
               

               
Cow position:
               
chr28:8358982-8358747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 88
               

               
Conread position:
               
101-399
               

               
Cow position:
               
chr28:18625319-18625001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
50, 172
               

               
Conread position:
               
101-424
               

               
Cow position:
               
chr28:16770677-16770346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
106-353
               

               
Cow position:
               
chr28:17235656-17235904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 74
               

               
Conread position:
               
112-303
               

               
Cow position:
               
chr28:3484654-3484449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 159
               

               
Conread position:
               
112-412
               

               
Cow position:
               
chr28:34430349-34430661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 157
               

               
Conread position:
               
112-424
               

               
Cow position:
               
chr28:2801300-2800997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
43, 78
               

               
Conread position:
               
112-424
               

               
Cow position:
               
chr28:5771440-5771120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
54, 158
               

               
Conread position:
               
113-287
               

               
Cow position:
               
chr28:3726957-3726772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
45, 155
               

               
Conread position:
               
115-336
               

               
Cow position:
               
chr28:7500960-7501187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
51, 115
               

               
Conread position:
               
115-424
               

               
Cow position:
               
chr28:23616478-23616156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 154
               

               
Conread position:
               
118-385
               

               
Cow position:
               
chr28:10035456-10035193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
55, 78
               

               
Conread position:
               
120-411
               

               
Cow position:
               
chr28:28076366-28076641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 38
               

               
Conread position:
               
124-424
               

               
Cow position:
               
chr28:12942440-12942139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 145
               

               
Conread position:
               
127-424
               

               
Cow position:
               
chr28:18791070-18790765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 7
               

               
Conread position:
               
145-424
               

               
Cow position:
               
chr28:26269366-26269083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 121
               

               
Conread position:
               
146-426
               

               
Cow position:
               
chr28:13607917-13607637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
149-422
               

               
Cow position:
               
chr28:17288249-17287980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
13, 113
               

               
Conread position:
               
149-423
               

               
Cow position:
               
chr28:16252823-16253100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 119
               

               
Conread position:
               
149-424
               

               
Cow position:
               
chr28:19222572-19222843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
150-424
               

               
Cow position:
               
chr28:16243735-16244005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
150-424
               

               
Cow position:
               
chr28:25424262-25424548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
24, 88
               

               
Conread position:
               
151-333
               

               
Cow position:
               
chr28:33032291-33032105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 115
               

               
Conread position:
               
152-407
               

               
Cow position:
               
chr28:20265417-20265159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
62, 20
               

               
Conread position:
               
165-328
               

               
Cow position:
               
chr28:7542069-7542240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
165-363
               

               
Cow position:
               
chr28:19024158-19023947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
30, 97
               

               
Conread position:
               
165-388
               

               
Cow position:
               
chr28:3714814-3714591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
38, 97
               

               
Conread position:
               
165-415
               

               
Cow position:
               
chr28:5552925-5553167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
165-422
               

               
Cow position:
               
chr28:15374810-15375070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 53
               

               
Conread position:
               
165-424
               

               
Cow position:
               
chr28:8681826-8682097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
165-424
               

               
Cow position:
               
chr28:22170696-22170964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 102
               

               
Conread position:
               
166-425
               

               
Cow position:
               
chr28:7547315-7547594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
37, 94
               

               
Conread position:
               
167-424
               

               
Cow position:
               
chr28:15689055-15688795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
25, 17
               

               
Conread position:
               
169-421
               

               
Cow position:
               
chr28:6577650-6577412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
169-422
               

               
Cow position:
               
chr28:26784454-26784711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
170-424
               

               
Cow position:
               
chr28:9390355-9390611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 92
               

               
Conread position:
               
172-306
               

               
Cow position:
               
chr28:5838545-5838407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
31, 87
               

               
Conread position:
               
172-356
               

               
Cow position:
               
chr28:118044-118234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
172-400
               

               
Cow position:
               
chr28:22739798-22739579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
28, 88
               

               
Conread position:
               
172-422
               

               
Cow position:
               
chr28:23840210-23839965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
23, 91
               

               
Conread position:
               
172-423
               

               
Cow position:
               
chr28:15008167-15007916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 88
               

               
Conread position:
               
182-424
               

               
Cow position:
               
chr28:29455664-29455903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
130, 74
               

               
Conread position:
               
191-389
               

               
Cow position:
               
chr28:10478359-10478554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
90, 66
               

               
Conread position:
               
191-420
               

               
Cow position:
               
chr28:7590197-7590424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
95, 65
               

               
Conread position:
               
191-423
               

               
Cow position:
               
chr28:2340517-2340286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
121, 32
               

               
Conread position:
               
193-411
               

               
Cow position:
               
chr28:6051714-6051499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
117, 10
               

               
Conread position:
               
194-424
               

               
Cow position:
               
chr28:13356595-13356831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
82, 63
               

               
Conread position:
               
195-364
               

               
Cow position:
               
chr28:3105230-3105052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 62
               

               
Conread position:
               
195-417
               

               
Cow position:
               
chr28:19394596-19394390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
95, 62
               

               
Conread position:
               
195-423
               

               
Cow position:
               
chr28:16412726-16412500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
113, 62
               

               
Conread position:
               
195-424
               

               
Cow position:
               
chr28:6960481-6960250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
196-341
               

               
Cow position:
               
chr28:28903689-28903836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
94, 61
               

               
Conread position:
               
196-424
               

               
Cow position:
               
chr28:25700894-25701104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
89, 61
               

               
Conread position:
               
196-424
               

               
Cow position:
               
chr28:34208685-34208463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 143
               

               
Conread position:
               
196-426
               

               
Cow position:
               
chr28:4022364-4022135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
196-426
               

               
Cow position:
               
chr28:15263738-15263973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 63
               

               
Conread position:
               
197-385
               

               
Cow position:
               
chr28:9108422-9108234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
109, 9
               

               
Conread position:
               
197-423
               

               
Cow position:
               
chr28:7751326-7751546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
197-424
               

               
Cow position:
               
chr28:2905550-2905334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
199-424
               

               
Cow position:
               
chr28:30978249-30978036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
65, 58
               

               
Conread position:
               
199-424
               

               
Cow position:
               
chr28:34150551-34150777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
113, 149
               

               
Conread position:
               
199-426
               

               
Cow position:
               
chr28:3474935-3474724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
200-424
               

               
Cow position:
               
chr28:10533960-10534175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
201-385
               

               
Cow position:
               
chr28:2124402-2124223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 42
               

               
Conread position:
               
201-422
               

               
Cow position:
               
chr28:25071097-25070872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
201-424
               

               
Cow position:
               
chr28:19295386-19295609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 58
               

               
Conread position:
               
201-424
               

               
Cow position:
               
chr28:24367959-24368197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
65, 15
               

               
Conread position:
               
201-426
               

               
Cow position:
               
chr28:16214930-16215139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
202-378
               

               
Cow position:
               
chr28:25459501-25459325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
82, 55
               

               
Conread position:
               
202-424
               

               
Cow position:
               
chr28:16401871-16401649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
108, 55
               

               
Conread position:
               
203-426
               

               
Cow position:
               
chr28:2279694-2279914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
107, 53
               

               
Conread position:
               
204-343
               

               
Cow position:
               
chr28:26264775-26264633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
81, 8
               

               
Conread position:
               
205-411
               

               
Cow position:
               
chr28:23776015-23775812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
107, 11
               

               
Conread position:
               
205-426
               

               
Cow position:
               
chr28:27428713-27428504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
139, 52
               

               
Conread position:
               
215-422
               

               
Cow position:
               
chr28:17738114-17738323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
71, 42
               

               
Conread position:
               
216-415
               

               
Cow position:
               
chr28:5658510-5658317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
217-418
               

               
Cow position:
               
chr28:4914137-4914342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
68, 40
               

               
Conread position:
               
217-424
               

               
Cow position:
               
chr28:21103878-21104093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
65, 40
               

               
Conread position:
               
218-369
               

               
Cow position:
               
chr28:10999723-10999860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
221-424
               

               
Cow position:
               
chr28:22304799-22304608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
223-424
               

               
Cow position:
               
chr28:30995230-30995034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
97, 20
               

               
Conread position:
               
237-332
               

               
Cow position:
               
chr28:19015346-19015444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
44, 23
               

               
Conread position:
               
252-424
               

               
Cow position:
               
chr28:3480196-3480022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 70
               
Show alignments to all cow chromosomes.