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Cow genome map

           
Conread name:
           
Lym1-jns73_D06.f
        

               
Conread position:
               
1-106
               

               
Cow position:
               
chr11:5559469-5559364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 36
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr11:26823298-26823181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1-117
               

               
Cow position:
               
chr11:33271615-33271502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
1-123
               

               
Cow position:
               
chr11:36361455-36361577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-125
               

               
Cow position:
               
chr11:83042054-83042179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1-132
               

               
Cow position:
               
chr11:68592205-68592072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr11:41278373-41278218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1-152
               

               
Cow position:
               
chr11:24551577-24551422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
1-154
               

               
Cow position:
               
chr11:44016431-44016273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr11:36136294-36136135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
99, 139
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr11:26442317-26442498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr11:1980079-1980280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr11:36521066-36520834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
127, 92
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr11:21886016-21885792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
127, 34
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr11:7500935-7500698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
117, 48
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr11:10956688-10956929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
126, 69
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chr11:15369575-15369330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr11:3715425-3715154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr11:62889705-62889973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 244
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr11:72871083-72870819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr11:53817041-53816759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 174
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr11:53510309-53510604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 184
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr11:73573833-73573542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
127, 232
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr11:5217274-5217587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
88, 72
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr11:3740150-3739831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
74, 300
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr11:81167845-81168154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
42, 37
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr11:32353800-32354115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
102, 112
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr11:50472504-50472182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
120, 198
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr11:75285570-75285902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr11:67615066-67615382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
127, 34
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr11:32777859-32777550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr11:32126802-32126454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
74, 261
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr11:67345473-67345807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 123
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr11:76890227-76889885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 23
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr11:6245507-6245157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 98
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr11:41133894-41134239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
143, 90
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr11:38334707-38334343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
127, 59
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr11:51687550-51687900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
127, 35
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr11:59463454-59463812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr11:64103865-64104234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
127, 59
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr11:70600641-70600996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
123, 171
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr11:5961493-5961137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
127, 205
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr11:7874327-7873971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 228
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr11:23271820-23272178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 53
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr11:30165697-30165333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
127, 203
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr11:38236431-38236068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
123, 46
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr11:46329684-46329324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
120, 27
               

               
Conread position:
               
1-361
               

               
Cow position:
               
chr11:62964680-62964311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
116, 358
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr11:5328971-5328618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
136, 179
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr11:5433452-5433087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
127, 71
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr11:10095529-10095167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
128, 96
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr11:23251413-23251780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
127, 38
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr11:26535970-26535599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
125, 96
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr11:35347565-35347934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 182
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr11:36194480-36194114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
126, 67
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr11:48383716-48383350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
143, 72
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr11:53773869-53773496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr11:65058426-65058791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
125, 239
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr11:47351521-47351156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
255, 153
               

               
Conread position:
               
1-372
               

               
Cow position:
               
chr11:64077316-64077696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
127, 111
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr11:30355231-30354877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr11:75479837-75480216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr11:13592925-13592547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 243
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr11:19591810-19592184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 34
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr11:79728486-79728860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 50
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr11:68913329-68912941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 235
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr11:77745061-77745462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 94
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr11:78380883-78381258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 73
               

               
Conread position:
               
1-391
               

               
Cow position:
               
chr11:62620562-62620172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
127, 79
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr11:4436520-4436119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr11:25791507-25791905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
123, 198
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr11:26117553-26117930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr11:63470044-63469669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr11:42884599-42884985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
126, 156
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr11:70422409-70422784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
2-280
               

               
Cow position:
               
chr11:30370289-30370010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 93
               

               
Conread position:
               
2-345
               

               
Cow position:
               
chr11:66572307-66572663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
85, 188
               

               
Conread position:
               
2-373
               

               
Cow position:
               
chr11:31417609-31417244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
6, 220
               

               
Conread position:
               
2-392
               

               
Cow position:
               
chr11:64044402-64044025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
265, 78
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr11:39060421-39060709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
125, 69
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr11:50112365-50112028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 94
               

               
Conread position:
               
3-359
               

               
Cow position:
               
chr11:30830439-30830791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 33
               

               
Conread position:
               
3-363
               

               
Cow position:
               
chr11:41354-41004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
125, 51
               

               
Conread position:
               
3-392
               

               
Cow position:
               
chr11:36182875-36182475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
125, 45
               

               
Conread position:
               
4-112
               

               
Cow position:
               
chr11:51683399-51683292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
4-122
               

               
Cow position:
               
chr11:26057464-26057584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
4-150
               

               
Cow position:
               
chr11:18119685-18119537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
125, 33
               

               
Conread position:
               
4-158
               

               
Cow position:
               
chr11:37099989-37100147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
120, 91
               

               
Conread position:
               
4-160
               

               
Cow position:
               
chr11:36300401-36300558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 31
               

               
Conread position:
               
4-160
               

               
Cow position:
               
chr11:80370297-80370137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
4-167
               

               
Cow position:
               
chr11:12555121-12555289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr11:25968670-25968865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
120, 174
               

               
Conread position:
               
4-197
               

               
Cow position:
               
chr11:49396343-49396539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
114, 65
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr11:43914476-43914265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
4-215
               

               
Cow position:
               
chr11:34968430-34968645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
4-216
               

               
Cow position:
               
chr11:66939408-66939625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
4-220
               

               
Cow position:
               
chr11:15382312-15382539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
4-225
               

               
Cow position:
               
chr11:46922704-46922927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
108, 72
               

               
Conread position:
               
4-229
               

               
Cow position:
               
chr11:35351850-35352084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 176
               

               
Conread position:
               
4-231
               

               
Cow position:
               
chr11:18924930-18924698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
4-231
               

               
Cow position:
               
chr11:56311417-56311643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
4-233
               

               
Cow position:
               
chr11:53888466-53888685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr11:5231464-5231718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
124, 92
               

               
Conread position:
               
4-256
               

               
Cow position:
               
chr11:7560184-7559925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chr11:37918865-37919126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
39, 231
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chr11:48086101-48085834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
37, 33
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chr11:63866478-63866736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 72
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr11:1067256-1067532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
114, 11
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr11:36914382-36914657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
123, 245
               

               
Conread position:
               
4-272
               

               
Cow position:
               
chr11:69168771-69168493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr11:8670200-8669917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
110, 215
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr11:17676192-17676461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
123, 78
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr11:36977990-36977713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
110, 168
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr11:62812769-62813045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
4-280
               

               
Cow position:
               
chr11:55911464-55911732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
230, 84
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chr11:83032860-83032583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
119, 76
               

               
Conread position:
               
4-282
               

               
Cow position:
               
chr11:58594203-58594487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
110, 240
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr11:16315057-16314769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
120, 245
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr11:32881328-32881047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
123, 213
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr11:34010533-34010251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
168, 109
               

               
Conread position:
               
4-295
               

               
Cow position:
               
chr11:5602639-5602339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
4-306
               

               
Cow position:
               
chr11:13940370-13940068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 56
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr11:49872704-49873017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 68
               

               
Conread position:
               
4-314
               

               
Cow position:
               
chr11:29308765-29308451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
110, 267
               

               
Conread position:
               
4-315
               

               
Cow position:
               
chr11:67614742-67615061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
4-317
               

               
Cow position:
               
chr11:69978148-69977843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
4-318
               

               
Cow position:
               
chr11:62789310-62788993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
124, 82
               

               
Conread position:
               
4-319
               

               
Cow position:
               
chr11:59024170-59024490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
69, 152
               

               
Conread position:
               
4-319
               

               
Cow position:
               
chr11:70756657-70756345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
128, 82
               

               
Conread position:
               
4-319
               

               
Cow position:
               
chr11:76653204-76652886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
121, 228
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr11:52690342-52690661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
117, 42
               

               
Conread position:
               
4-323
               

               
Cow position:
               
chr11:42067047-42066721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
124, 87
               

               
Conread position:
               
4-325
               

               
Cow position:
               
chr11:72443297-72442971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
124, 271
               

               
Conread position:
               
4-328
               

               
Cow position:
               
chr11:63998907-63999234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
115, 193
               

               
Conread position:
               
4-329
               

               
Cow position:
               
chr11:23407643-23407316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 76
               

               
Conread position:
               
4-329
               

               
Cow position:
               
chr11:49057566-49057257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
232, 122
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr11:32254033-32254371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 86
               

               
Conread position:
               
4-340
               

               
Cow position:
               
chr11:44223064-44222734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
123, 31
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr11:30764675-30764321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr11:36940411-36940762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
124, 245
               

               
Conread position:
               
4-346
               

               
Cow position:
               
chr11:41215916-41215579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 46
               

               
Conread position:
               
4-346
               

               
Cow position:
               
chr11:80756607-80756946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
124, 66
               

               
Conread position:
               
4-347
               

               
Cow position:
               
chr11:48296208-48295869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
124, 45
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr11:24438036-24438390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
124, 117
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr11:33293596-33293953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
23, 136
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr11:45619533-45619184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
114, 82
               

               
Conread position:
               
4-350
               

               
Cow position:
               
chr11:42919033-42919394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 300
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr11:8496216-8495870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
120, 195
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr11:9464020-9463662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
124, 157
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr11:68770546-68770191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
94, 50
               

               
Conread position:
               
4-354
               

               
Cow position:
               
chr11:1380860-1380511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
120, 183
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr11:67600961-67600611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 84
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr11:32055002-32055360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
124, 86
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr11:18699053-18698701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
86, 113
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr11:34646778-34646415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 273
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr11:55053046-55052709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
124, 35
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr11:55334102-55333735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
87, 243
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr11:70483668-70484035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
124, 91
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:3720438-3720075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
124, 170
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:3920120-3920485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
123, 150
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:4732527-4732162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
128, 247
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:15632377-15632736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
55, 127
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:15772530-15772899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 84
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:19594002-19593642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
123, 170
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:20762035-20761667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 147
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:26143916-26144278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:27248671-27248313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
124, 76
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:27404888-27405245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
96, 83
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:29960475-29960127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
124, 24
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:32693311-32693651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:33349519-33349878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
128, 51
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:42016456-42016815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 23
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:42291657-42292012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
109, 91
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:44032189-44031823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:45276965-45277333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
88, 163
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:50152630-50152995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 93
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:57724640-57725005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
128, 228
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:63065835-63065477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
168, 35
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:70382506-70382872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
123, 197
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:74316889-74316534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:77758578-77758937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 60
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:80923143-80923503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 31
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:81300438-81300789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
107, 78
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr11:83398090-83397720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
124, 170
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr11:20684387-20684757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chr11:7458097-7458471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr11:49153123-49152763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
125, 71
               

               
Conread position:
               
4-374
               

               
Cow position:
               
chr11:31526063-31525677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
121, 378
               

               
Conread position:
               
4-374
               

               
Cow position:
               
chr11:35580444-35580067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
83, 92
               

               
Conread position:
               
4-388
               

               
Cow position:
               
chr11:19500621-19500987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
103, 68
               

               
Conread position:
               
4-389
               

               
Cow position:
               
chr11:20238859-20238463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
124, 96
               

               
Conread position:
               
4-389
               

               
Cow position:
               
chr11:65157222-65157618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 320
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr11:2084328-2083936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 357
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr11:2917410-2917791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
80, 115
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr11:3726473-3726074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr11:13061071-13061435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
105, 50
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr11:27747101-27746709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr11:35153637-35154039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
56, 42
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr11:40792510-40792905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
28, 23
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr11:65762402-65762808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
82, 14
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr11:68909669-68910059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 171
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr11:83043184-83043572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
75, 124
               

               
Conread position:
               
4-391
               

               
Cow position:
               
chr11:1625039-1625427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
95, 246
               

               
Conread position:
               
4-391
               

               
Cow position:
               
chr11:66041455-66041061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:6233695-6234092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 33
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:13500193-13499801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 27
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:14649128-14649526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
110, 211
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:21893966-21894367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
85, 167
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:30476178-30475785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
128, 32
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:34616444-34616055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
123, 228
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:39462802-39462404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
120, 70
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:40459288-40458907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
110, 27
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:41985865-41986257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
123, 66
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:42359276-42358911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:45283110-45282723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
124, 64
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:47899433-47899063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
260, 71
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:48672897-48672488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
123, 201
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:52380689-52381084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
124, 84
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:53778803-53778399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:58102574-58102988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:61454320-61454748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
59, 53
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:63519176-63518801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
263, 23
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:64029084-64029470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 91
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:65495161-65495541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
125, 73
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:66188138-66188534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 34
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr11:80819842-80820212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
225, 31
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr11:17859970-17860368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
81, 244
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr11:17889544-17889941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
124, 228
               

               
Conread position:
               
4-394
               

               
Cow position:
               
chr11:2788578-2788164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
4-397
               

               
Cow position:
               
chr11:37804369-37804769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 284
               

               
Conread position:
               
5-117
               

               
Cow position:
               
chr11:44176775-44176667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
5-118
               

               
Cow position:
               
chr11:21124427-21124540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-127
               

               
Cow position:
               
chr11:63475489-63475611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-166
               

               
Cow position:
               
chr11:63407876-63407713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 44
               

               
Conread position:
               
5-199
               

               
Cow position:
               
chr11:42084491-42084691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
5-258
               

               
Cow position:
               
chr11:57503662-57503407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
58, 240
               

               
Conread position:
               
5-273
               

               
Cow position:
               
chr11:22676294-22676025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
223, 245
               

               
Conread position:
               
5-283
               

               
Cow position:
               
chr11:2327871-2327586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 232
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr11:48660112-48659793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
122, 67
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr11:40395619-40395298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
5-333
               

               
Cow position:
               
chr11:45742552-45742232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
5-346
               

               
Cow position:
               
chr11:258991-259335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
5-363
               

               
Cow position:
               
chr11:2874584-2874209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
85, 252
               

               
Conread position:
               
5-363
               

               
Cow position:
               
chr11:6399882-6400249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 343
               

               
Conread position:
               
5-363
               

               
Cow position:
               
chr11:30192360-30191993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
89, 33
               

               
Conread position:
               
5-391
               

               
Cow position:
               
chr11:4207493-4207100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 22
               

               
Conread position:
               
5-392
               

               
Cow position:
               
chr11:17227470-17227853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
79, 6
               

               
Conread position:
               
5-392
               

               
Cow position:
               
chr11:42835771-42836174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
6-118
               

               
Cow position:
               
chr11:43594247-43594358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
6-208
               

               
Cow position:
               
chr11:34644839-34644631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
83, 170
               

               
Conread position:
               
6-224
               

               
Cow position:
               
chr11:29786312-29786539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr11:21508192-21507913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 236
               

               
Conread position:
               
6-315
               

               
Cow position:
               
chr11:40608412-40608730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
73, 59
               

               
Conread position:
               
6-316
               

               
Cow position:
               
chr11:62742467-62742766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
122, 84
               

               
Conread position:
               
6-343
               

               
Cow position:
               
chr11:71390393-71390723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
168, 66
               

               
Conread position:
               
6-360
               

               
Cow position:
               
chr11:866461-866126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
309, 113
               

               
Conread position:
               
6-378
               

               
Cow position:
               
chr11:68841390-68841011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
122, 239
               

               
Conread position:
               
6-384
               

               
Cow position:
               
chr11:62239922-62239543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
122, 59
               

               
Conread position:
               
6-390
               

               
Cow position:
               
chr11:11558349-11557957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
7-160
               

               
Cow position:
               
chr11:33369332-33369174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
7-347
               

               
Cow position:
               
chr11:81134989-81135325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
122, 83
               

               
Conread position:
               
7-363
               

               
Cow position:
               
chr11:46747679-46748043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
121, 313
               

               
Conread position:
               
7-368
               

               
Cow position:
               
chr11:36058978-36058620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
120, 210
               

               
Conread position:
               
7-390
               

               
Cow position:
               
chr11:4323546-4323155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
7-392
               

               
Cow position:
               
chr11:15504289-15503887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
107, 123
               

               
Conread position:
               
7-392
               

               
Cow position:
               
chr11:51293231-51293623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
162, 206
               

               
Conread position:
               
7-393
               

               
Cow position:
               
chr11:19247025-19247409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 35
               

               
Conread position:
               
8-262
               

               
Cow position:
               
chr11:17721622-17721883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
120, 80
               

               
Conread position:
               
8-265
               

               
Cow position:
               
chr11:41313483-41313738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
121, 34
               

               
Conread position:
               
8-274
               

               
Cow position:
               
chr11:4199453-4199181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
65, 163
               

               
Conread position:
               
8-285
               

               
Cow position:
               
chr11:80412830-80413114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
69, 234
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chr11:46999165-46998873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 177
               

               
Conread position:
               
8-322
               

               
Cow position:
               
chr11:70206494-70206184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
8-327
               

               
Cow position:
               
chr11:21421759-21422079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
120, 222
               

               
Conread position:
               
8-342
               

               
Cow position:
               
chr11:6202635-6202288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
63, 236
               

               
Conread position:
               
8-348
               

               
Cow position:
               
chr11:51729453-51729124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
99, 61
               

               
Conread position:
               
8-353
               

               
Cow position:
               
chr11:5075051-5075392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
130, 114
               

               
Conread position:
               
8-354
               

               
Cow position:
               
chr11:33286776-33287122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
119, 241
               

               
Conread position:
               
8-355
               

               
Cow position:
               
chr11:30209644-30209992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
8-359
               

               
Cow position:
               
chr11:30638773-30639121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 78
               

               
Conread position:
               
8-360
               

               
Cow position:
               
chr11:25620211-25620573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
120, 70
               

               
Conread position:
               
8-360
               

               
Cow position:
               
chr11:55744648-55744300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 214
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr11:21843960-21844312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
120, 72
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr11:30721279-30720917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
106, 199
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr11:32595638-32595290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
119, 206
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr11:35724149-35723800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
120, 187
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr11:52297044-52297400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
120, 67
               

               
Conread position:
               
8-369
               

               
Cow position:
               
chr11:68112080-68112449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
120, 82
               

               
Conread position:
               
8-390
               

               
Cow position:
               
chr11:85723873-85723490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 217
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr11:11125844-11125450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 27
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr11:18484022-18484373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
186, 63
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr11:21728110-21728481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
173, 19
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr11:48544615-48544229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
110, 78
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr11:49149225-49148835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
121, 78
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr11:58990690-58990297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 173
               

               
Conread position:
               
8-393
               

               
Cow position:
               
chr11:33348020-33348399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 40
               

               
Conread position:
               
9-225
               

               
Cow position:
               
chr11:3715000-3714784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
119, 165
               

               
Conread position:
               
9-276
               

               
Cow position:
               
chr11:80564475-80564201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
76, 104
               

               
Conread position:
               
9-320
               

               
Cow position:
               
chr11:35980963-35981281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
122, 114
               

               
Conread position:
               
9-355
               

               
Cow position:
               
chr11:65607513-65607862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
43, 81
               

               
Conread position:
               
9-359
               

               
Cow position:
               
chr11:84385462-84385813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 26
               

               
Conread position:
               
9-392
               

               
Cow position:
               
chr11:75178076-75177675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
9-393
               

               
Cow position:
               
chr11:45631602-45631979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
230, 84
               

               
Conread position:
               
10-291
               

               
Cow position:
               
chr11:17036355-17036638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
118, 73
               

               
Conread position:
               
10-358
               

               
Cow position:
               
chr11:14470538-14470195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
118, 60
               

               
Conread position:
               
10-358
               

               
Cow position:
               
chr11:43360610-43360963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
118, 82
               

               
Conread position:
               
10-360
               

               
Cow position:
               
chr11:18572960-18572624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
165, 64
               

               
Conread position:
               
10-363
               

               
Cow position:
               
chr11:81913545-81913899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 85
               

               
Conread position:
               
10-392
               

               
Cow position:
               
chr11:45872132-45872532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 88
               

               
Conread position:
               
10-392
               

               
Cow position:
               
chr11:56676102-56675704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
65, 81
               

               
Conread position:
               
10-397
               

               
Cow position:
               
chr11:86925787-86926139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
385, 10
               

               
Conread position:
               
11-394
               

               
Cow position:
               
chr11:9221546-9221941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
62, 174
               

               
Conread position:
               
12-363
               

               
Cow position:
               
chr11:2907359-2907698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
116, 23
               

               
Conread position:
               
12-393
               

               
Cow position:
               
chr11:13042973-13043356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 65
               

               
Conread position:
               
13-209
               

               
Cow position:
               
chr11:35109366-35109563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
13-392
               

               
Cow position:
               
chr11:19487305-19487689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
115, 260
               

               
Conread position:
               
14-392
               

               
Cow position:
               
chr11:70459730-70459361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
100, 126
               

               
Conread position:
               
15-183
               

               
Cow position:
               
chr11:60720282-60720455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
15-202
               

               
Cow position:
               
chr11:46884547-46884355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
15-206
               

               
Cow position:
               
chr11:25783887-25783690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
15-293
               

               
Cow position:
               
chr11:82374042-82373759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
113, 163
               

               
Conread position:
               
15-319
               

               
Cow position:
               
chr11:43008134-43008442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 164
               

               
Conread position:
               
15-389
               

               
Cow position:
               
chr11:48474881-48474497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
15-390
               

               
Cow position:
               
chr11:71868433-71868815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 14
               

               
Conread position:
               
16-276
               

               
Cow position:
               
chr11:6296907-6297172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 247
               

               
Conread position:
               
16-339
               

               
Cow position:
               
chr11:31337550-31337225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
201, 54
               

               
Conread position:
               
16-359
               

               
Cow position:
               
chr11:28993577-28993903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
251, 75
               

               
Conread position:
               
16-363
               

               
Cow position:
               
chr11:8524947-8525290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
108, 60
               

               
Conread position:
               
16-392
               

               
Cow position:
               
chr11:60301806-60302171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
112, 38
               

               
Conread position:
               
16-392
               

               
Cow position:
               
chr11:62709713-62710084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
317, 120
               

               
Conread position:
               
17-313
               

               
Cow position:
               
chr11:47772212-47772522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 106
               

               
Conread position:
               
20-368
               

               
Cow position:
               
chr11:81406000-81406343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
108, 82
               

               
Conread position:
               
21-299
               

               
Cow position:
               
chr11:11994546-11994822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 51
               

               
Conread position:
               
21-329
               

               
Cow position:
               
chr11:85703855-85703560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
127, 56
               

               
Conread position:
               
21-339
               

               
Cow position:
               
chr11:63435688-63435362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 151
               

               
Conread position:
               
21-363
               

               
Cow position:
               
chr11:4674278-4674627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
106, 30
               

               
Conread position:
               
21-363
               

               
Cow position:
               
chr11:17508385-17508739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
107, 223
               

               
Conread position:
               
21-363
               

               
Cow position:
               
chr11:34144753-34145093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 145
               

               
Conread position:
               
21-390
               

               
Cow position:
               
chr11:32199109-32198728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
107, 100
               

               
Conread position:
               
21-392
               

               
Cow position:
               
chr11:73353901-73354267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
108, 53
               

               
Conread position:
               
21-392
               

               
Cow position:
               
chr11:83066658-83066282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
51, 106
               

               
Conread position:
               
23-286
               

               
Cow position:
               
chr11:31875258-31874989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
101, 245
               

               
Conread position:
               
23-319
               

               
Cow position:
               
chr11:35791656-35791948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
91, 183
               

               
Conread position:
               
23-358
               

               
Cow position:
               
chr11:18508865-18509193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 193
               

               
Conread position:
               
24-271
               

               
Cow position:
               
chr11:35926746-35926995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
24-368
               

               
Cow position:
               
chr11:45646430-45646779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
90, 66
               

               
Conread position:
               
27-219
               

               
Cow position:
               
chr11:54741925-54742116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
94, 39
               

               
Conread position:
               
27-274
               

               
Cow position:
               
chr11:41281206-41280948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
101, 215
               

               
Conread position:
               
27-277
               

               
Cow position:
               
chr11:63396979-63396722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
5, 222
               

               
Conread position:
               
27-319
               

               
Cow position:
               
chr11:63202087-63202383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 234
               

               
Conread position:
               
27-348
               

               
Cow position:
               
chr11:39499515-39499194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
80, 45
               

               
Conread position:
               
27-349
               

               
Cow position:
               
chr11:8544856-8545178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 137
               

               
Conread position:
               
31-363
               

               
Cow position:
               
chr11:59903048-59902711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
97, 204
               

               
Conread position:
               
32-346
               

               
Cow position:
               
chr11:17493638-17493316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
32-363
               

               
Cow position:
               
chr11:87155676-87155338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
92, 142
               

               
Conread position:
               
34-363
               

               
Cow position:
               
chr11:34121351-34121021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
91, 56
               

               
Conread position:
               
34-392
               

               
Cow position:
               
chr11:11469500-11469847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 86
               

               
Conread position:
               
38-359
               

               
Cow position:
               
chr11:3393065-3393384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 84
               

               
Conread position:
               
38-360
               

               
Cow position:
               
chr11:8988087-8988404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
39-324
               

               
Cow position:
               
chr11:53463090-53462802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
87, 43
               

               
Conread position:
               
39-363
               

               
Cow position:
               
chr11:68206698-68207018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
117, 47
               

               
Conread position:
               
39-390
               

               
Cow position:
               
chr11:22977729-22978071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 30
               

               
Conread position:
               
42-379
               

               
Cow position:
               
chr11:63909510-63909853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
35, 135
               

               
Conread position:
               
42-392
               

               
Cow position:
               
chr11:4662909-4663252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
86, 30
               

               
Conread position:
               
42-392
               

               
Cow position:
               
chr11:36112563-36112204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
90, 45
               

               
Conread position:
               
42-392
               

               
Cow position:
               
chr11:82940481-82940831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
43-363
               

               
Cow position:
               
chr11:23586784-23586458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
28, 12
               

               
Conread position:
               
46-363
               

               
Cow position:
               
chr11:18243804-18244118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
221, 128
               

               
Conread position:
               
49-353
               

               
Cow position:
               
chr11:81282091-81281778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
89, 33
               

               
Conread position:
               
49-363
               

               
Cow position:
               
chr11:32436476-32436152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
28, 51
               

               
Conread position:
               
49-375
               

               
Cow position:
               
chr11:34113400-34113075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 44
               

               
Conread position:
               
50-363
               

               
Cow position:
               
chr11:33414375-33414057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
78, 204
               

               
Conread position:
               
51-360
               

               
Cow position:
               
chr11:59873059-59872757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
53-363
               

               
Cow position:
               
chr11:7924458-7924766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
71, 87
               

               
Conread position:
               
58-363
               

               
Cow position:
               
chr11:83687304-83687607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
63-391
               

               
Cow position:
               
chr11:71168477-71168790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
65-360
               

               
Cow position:
               
chr11:44636631-44636934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 36
               

               
Conread position:
               
66-309
               

               
Cow position:
               
chr11:33345566-33345317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
66-367
               

               
Cow position:
               
chr11:39118874-39118572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 29
               

               
Conread position:
               
70-360
               

               
Cow position:
               
chr11:61958628-61958923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
70-363
               

               
Cow position:
               
chr11:15373958-15373672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 165
               

               
Conread position:
               
70-363
               

               
Cow position:
               
chr11:28644206-28643902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
58, 253
               

               
Conread position:
               
70-384
               

               
Cow position:
               
chr11:25387186-25386860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
70-392
               

               
Cow position:
               
chr11:48272319-48271981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 226
               

               
Conread position:
               
71-355
               

               
Cow position:
               
chr11:16906933-16907214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
48, 112
               

               
Conread position:
               
71-363
               

               
Cow position:
               
chr11:377523-377825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
30, 183
               

               
Conread position:
               
71-392
               

               
Cow position:
               
chr11:44234473-44234141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
57, 239
               

               
Conread position:
               
74-392
               

               
Cow position:
               
chr11:36849032-36848718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 104
               

               
Conread position:
               
75-363
               

               
Cow position:
               
chr11:67747393-67747105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
67, 42
               

               
Conread position:
               
75-392
               

               
Cow position:
               
chr11:62155752-62155413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
53, 323
               

               
Conread position:
               
75-392
               

               
Cow position:
               
chr11:63482317-63482639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
76-392
               

               
Cow position:
               
chr11:20602339-20602026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
42, 190
               

               
Conread position:
               
77-347
               

               
Cow position:
               
chr11:63917365-63917628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
52, 158
               

               
Conread position:
               
77-348
               

               
Cow position:
               
chr11:7460502-7460782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
26, 175
               

               
Conread position:
               
77-354
               

               
Cow position:
               
chr11:70086444-70086154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
77-359
               

               
Cow position:
               
chr11:65409047-65409330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
77-360
               

               
Cow position:
               
chr11:30955112-30954822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
51, 252
               

               
Conread position:
               
77-363
               

               
Cow position:
               
chr11:17831111-17831398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
51, 19
               

               
Conread position:
               
77-364
               

               
Cow position:
               
chr11:7590300-7590013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 102
               

               
Conread position:
               
77-392
               

               
Cow position:
               
chr11:30925266-30924939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
61, 224
               

               
Conread position:
               
77-392
               

               
Cow position:
               
chr11:33753800-33754113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
38, 49
               

               
Conread position:
               
77-392
               

               
Cow position:
               
chr11:77128774-77128455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
77-392
               

               
Cow position:
               
chr11:83230289-83230601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
51, 115
               

               
Conread position:
               
78-392
               

               
Cow position:
               
chr11:36658713-36659026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
47, 27
               

               
Conread position:
               
79-374
               

               
Cow position:
               
chr11:2933256-2932962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 97
               

               
Conread position:
               
81-392
               

               
Cow position:
               
chr11:71501024-71501336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
84-359
               

               
Cow position:
               
chr11:49934626-49934916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 165
               

               
Conread position:
               
84-390
               

               
Cow position:
               
chr11:36799203-36799510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
46, 153
               

               
Conread position:
               
87-360
               

               
Cow position:
               
chr11:1157747-1157468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 99
               

               
Conread position:
               
89-359
               

               
Cow position:
               
chr11:76114742-76114479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 139
               

               
Conread position:
               
89-363
               

               
Cow position:
               
chr11:1362368-1362657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
89-392
               

               
Cow position:
               
chr11:30934516-30934211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 139
               

               
Conread position:
               
91-393
               

               
Cow position:
               
chr11:26483803-26483504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
179, 14
               

               
Conread position:
               
100-363
               

               
Cow position:
               
chr11:42043908-42044167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
28, 72
               

               
Conread position:
               
100-380
               

               
Cow position:
               
chr11:73512355-73512625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
100-392
               

               
Cow position:
               
chr11:36987038-36986748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 116
               

               
Conread position:
               
101-392
               

               
Cow position:
               
chr11:35873915-35874199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 160
               

               
Conread position:
               
105-392
               

               
Cow position:
               
chr11:44642208-44642499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
23, 48
               

               
Conread position:
               
106-359
               

               
Cow position:
               
chr11:7395212-7394966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
32, 57
               

               
Conread position:
               
114-355
               

               
Cow position:
               
chr11:41175875-41176121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 212
               

               
Conread position:
               
126-393
               

               
Cow position:
               
chr11:70273367-70273086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
136-392
               

               
Cow position:
               
chr11:30120614-30120875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
136-393
               

               
Cow position:
               
chr11:23138007-23138276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
87, 54
               

               
Conread position:
               
137-360
               

               
Cow position:
               
chr11:49231920-49231700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
90, 109
               

               
Conread position:
               
137-363
               

               
Cow position:
               
chr11:45898003-45898232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
137-363
               

               
Cow position:
               
chr11:47545178-47544951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
86, 25
               

               
Conread position:
               
137-363
               

               
Cow position:
               
chr11:71009175-71008957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
81, 31
               

               
Conread position:
               
137-363
               

               
Cow position:
               
chr11:80761331-80761560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 27
               

               
Conread position:
               
137-368
               

               
Cow position:
               
chr11:8147852-8148081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
132, 164
               

               
Conread position:
               
137-390
               

               
Cow position:
               
chr11:38874355-38874614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
137-390
               

               
Cow position:
               
chr11:52983722-52983479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
130, 93
               

               
Conread position:
               
137-392
               

               
Cow position:
               
chr11:3833316-3833561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
209, 32
               

               
Conread position:
               
137-392
               

               
Cow position:
               
chr11:34032156-34032411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
130, 27
               

               
Conread position:
               
140-363
               

               
Cow position:
               
chr11:16910315-16910543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
141-392
               

               
Cow position:
               
chr11:18340998-18341252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
145-392
               

               
Cow position:
               
chr11:42792934-42793189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 7
               

               
Conread position:
               
146-363
               

               
Cow position:
               
chr11:5031738-5031954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
123, 28
               

               
Conread position:
               
146-390
               

               
Cow position:
               
chr11:2811692-2811935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
90, 148
               

               
Conread position:
               
146-392
               

               
Cow position:
               
chr11:11232418-11232666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
147-392
               

               
Cow position:
               
chr11:8339369-8339618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
72, 86
               

               
Conread position:
               
147-393
               

               
Cow position:
               
chr11:27386302-27386554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
81, 208
               

               
Conread position:
               
148-363
               

               
Cow position:
               
chr11:61246423-61246639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
98, 81
               

               
Conread position:
               
153-341
               

               
Cow position:
               
chr11:21427962-21428151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
162-394
               

               
Cow position:
               
chr11:38810327-38810566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
173-333
               

               
Cow position:
               
chr11:65435865-65435704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 39
               

               
Conread position:
               
173-390
               

               
Cow position:
               
chr11:16251233-16251460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
61, 141
               

               
Conread position:
               
173-392
               

               
Cow position:
               
chr11:17661102-17660881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
173-392
               

               
Cow position:
               
chr11:62880615-62880839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
141, 94
               

               
Conread position:
               
174-360
               

               
Cow position:
               
chr11:33468720-33468536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
93, 56
               

               
Conread position:
               
174-363
               

               
Cow position:
               
chr11:37347488-37347297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
174-391
               

               
Cow position:
               
chr11:48932577-48932796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
93, 56
               

               
Conread position:
               
174-392
               

               
Cow position:
               
chr11:24585191-24584967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 144
               

               
Conread position:
               
174-392
               

               
Cow position:
               
chr11:48697458-48697234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
54, 81
               

               
Conread position:
               
174-392
               

               
Cow position:
               
chr11:58588356-58588131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
93, 101
               

               
Conread position:
               
175-391
               

               
Cow position:
               
chr11:62979499-62979265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
175-392
               

               
Cow position:
               
chr11:73924554-73924772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
95, 63
               

               
Conread position:
               
178-392
               

               
Cow position:
               
chr11:43430450-43430660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 8
               

               
Conread position:
               
179-345
               

               
Cow position:
               
chr11:57170825-57170990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
90, 136
               

               
Conread position:
               
179-346
               

               
Cow position:
               
chr11:65843087-65843256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
6, 123
               

               
Conread position:
               
179-358
               

               
Cow position:
               
chr11:15525972-15525779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
179-363
               

               
Cow position:
               
chr11:36672039-36672227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
179-390
               

               
Cow position:
               
chr11:53130818-53130600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
179-390
               

               
Cow position:
               
chr11:83196502-83196287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
179-392
               

               
Cow position:
               
chr11:10076773-10076562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
51, 174
               

               
Conread position:
               
179-392
               

               
Cow position:
               
chr11:37068312-37068517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 58
               

               
Conread position:
               
179-393
               

               
Cow position:
               
chr11:2309877-2309659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 135
               

               
Conread position:
               
180-363
               

               
Cow position:
               
chr11:48042031-48042219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
180-390
               

               
Cow position:
               
chr11:59155871-59156083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 71
               

               
Conread position:
               
180-392
               

               
Cow position:
               
chr11:81174890-81174676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
181-363
               

               
Cow position:
               
chr11:41239266-41239451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
181-386
               

               
Cow position:
               
chr11:63499321-63499528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
89, 49
               

               
Conread position:
               
182-332
               

               
Cow position:
               
chr11:67246792-67246644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
182-374
               

               
Cow position:
               
chr11:17553343-17553533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
88, 59
               

               
Conread position:
               
184-382
               

               
Cow position:
               
chr11:47586350-47586552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
160, 46
               

               
Conread position:
               
184-390
               

               
Cow position:
               
chr11:31901046-31900836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
83, 115
               

               
Conread position:
               
184-392
               

               
Cow position:
               
chr11:8105785-8105569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
184-392
               

               
Cow position:
               
chr11:62808652-62808862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
85, 43
               

               
Conread position:
               
184-392
               

               
Cow position:
               
chr11:63516827-63516610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 132
               

               
Conread position:
               
185-360
               

               
Cow position:
               
chr11:7445043-7444864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
187-389
               

               
Cow position:
               
chr11:34829782-34829989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 102
               

               
Conread position:
               
190-363
               

               
Cow position:
               
chr11:3175376-3175202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
31, 56
               

               
Conread position:
               
190-364
               

               
Cow position:
               
chr11:33364336-33364164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
80, 8
               

               
Conread position:
               
190-390
               

               
Cow position:
               
chr11:17112638-17112838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 98
               

               
Conread position:
               
190-391
               

               
Cow position:
               
chr11:81614646-81614845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 72
               

               
Conread position:
               
190-392
               

               
Cow position:
               
chr11:986924-986726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 43
               

               
Conread position:
               
190-393
               

               
Cow position:
               
chr11:30110956-30110753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
77, 137
               

               
Conread position:
               
194-392
               

               
Cow position:
               
chr11:49106047-49105844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
195-360
               

               
Cow position:
               
chr11:81605618-81605451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
37, 51
               

               
Conread position:
               
195-372
               

               
Cow position:
               
chr11:9088315-9088495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 38
               

               
Conread position:
               
196-392
               

               
Cow position:
               
chr11:77241358-77241160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 131
               

               
Conread position:
               
204-363
               

               
Cow position:
               
chr11:30879655-30879503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
204-392
               

               
Cow position:
               
chr11:9837118-9837310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
204-394
               

               
Cow position:
               
chr11:43914195-43914006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 139
               

               
Conread position:
               
205-392
               

               
Cow position:
               
chr11:17574354-17574534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 65
               

               
Conread position:
               
206-360
               

               
Cow position:
               
chr11:47851004-47850850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 29
               

               
Conread position:
               
207-363
               

               
Cow position:
               
chr11:71846369-71846525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
62, 114
               

               
Conread position:
               
213-390
               

               
Cow position:
               
chr11:81066616-81066793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
218-392
               

               
Cow position:
               
chr11:21819479-21819658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
51, 104
               

               
Conread position:
               
219-363
               

               
Cow position:
               
chr11:74929747-74929603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
222-392
               

               
Cow position:
               
chr11:29946968-29947140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
46, 100
               

               
Conread position:
               
223-392
               

               
Cow position:
               
chr11:75748394-75748221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
44, 73
               

               
Conread position:
               
224-392
               

               
Cow position:
               
chr11:27462432-27462598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
95, 45
               

               
Conread position:
               
225-363
               

               
Cow position:
               
chr11:57111348-57111489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 88
               

               
Conread position:
               
225-392
               

               
Cow position:
               
chr11:77208004-77207835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 8
               

               
Conread position:
               
229-390
               

               
Cow position:
               
chr11:68570711-68570883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
41, 166
               

               
Conread position:
               
230-392
               

               
Cow position:
               
chr11:41577060-41577222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
40, 85
               

               
Conread position:
               
232-359
               

               
Cow position:
               
chr11:84924143-84924270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
233-364
               

               
Cow position:
               
chr11:64904948-64904816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
233-373
               

               
Cow position:
               
chr11:29786654-29786794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
36, 100
               

               
Conread position:
               
242-354
               

               
Cow position:
               
chr11:29266483-29266370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
242-392
               

               
Cow position:
               
chr11:35363440-35363281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
243-358
               

               
Cow position:
               
chr11:84890809-84890924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
243-391
               

               
Cow position:
               
chr11:16233002-16233143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
243-392
               

               
Cow position:
               
chr11:25165383-25165230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
246-373
               

               
Cow position:
               
chr11:6329187-6329056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
24, 124
               

               
Conread position:
               
248-392
               

               
Cow position:
               
chr11:34413034-34412883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 141
               

               
Conread position:
               
249-392
               

               
Cow position:
               
chr11:46451542-46451403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
22, 37
               
Show alignments to all cow chromosomes.