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Cow genome map

           
Conread name:
           
Lym1-jns73_D06.f
        

               
Conread position:
               
1-117
               

               
Cow position:
               
chr29:22018985-22019100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr29:24605097-24604937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
127, 79
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr29:24187862-24188101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
128, 231
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr29:396603-396369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
127, 71
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr29:27911793-27911527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
127, 181
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr29:27926975-27926710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
127, 68
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr29:23155436-23155142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
61, 178
               

               
Conread position:
               
1-306
               

               
Cow position:
               
chr29:5520283-5520612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
123, 79
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr29:29183924-29183609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
127, 217
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr29:5176169-5175839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
79, 45
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr29:28813771-28814097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
127, 240
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr29:40994678-40995013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
73, 169
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr29:24035209-24035531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 19
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr29:38440458-38440114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
85, 34
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr29:30227079-30227406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
155, 123
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr29:35084022-35084370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
127, 44
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr29:20626771-20626416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
47, 233
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr29:40097182-40096800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
62, 181
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr29:22690428-22690060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 237
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr29:44378205-44378588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 153
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr29:25268339-25267947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1-387
               

               
Cow position:
               
chr29:24293071-24292679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
117, 52
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr29:16309922-16309558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
78, 37
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr29:1325647-1325241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
55, 95
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr29:4121057-4120649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr29:21196451-21196847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
128, 82
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr29:31929187-31928782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
127, 64
               

               
Conread position:
               
3-363
               

               
Cow position:
               
chr29:28195334-28195676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
84, 122
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr29:29769155-29769543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 87
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr29:29057373-29056963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
97, 14
               

               
Conread position:
               
4-122
               

               
Cow position:
               
chr29:4648014-4648127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
4-154
               

               
Cow position:
               
chr29:36357326-36357171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
4-199
               

               
Cow position:
               
chr29:14577055-14576859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
124, 87
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr29:19363906-19363700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
124, 76
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr29:28420955-28420745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
120, 166
               

               
Conread position:
               
4-215
               

               
Cow position:
               
chr29:16200278-16200494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
4-215
               

               
Cow position:
               
chr29:30827606-30827390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
4-232
               

               
Cow position:
               
chr29:5568690-5568457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
4-262
               

               
Cow position:
               
chr29:501398-501137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
19, 7
               

               
Conread position:
               
4-263
               

               
Cow position:
               
chr29:42630315-42630058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
118, 65
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chr29:18449940-18450200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
120, 91
               

               
Conread position:
               
4-265
               

               
Cow position:
               
chr29:20167621-20167357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
90, 35
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr29:21645515-21645246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 166
               

               
Conread position:
               
4-279
               

               
Cow position:
               
chr29:22518923-22519210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 32
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr29:16290921-16290645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
124, 63
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr29:20770542-20770258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
124, 57
               

               
Conread position:
               
4-306
               

               
Cow position:
               
chr29:26477742-26477432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 10
               

               
Conread position:
               
4-307
               

               
Cow position:
               
chr29:28674504-28674815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
4-313
               

               
Cow position:
               
chr29:1615125-1614813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
124, 78
               

               
Conread position:
               
4-313
               

               
Cow position:
               
chr29:22648045-22647736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
128, 28
               

               
Conread position:
               
4-314
               

               
Cow position:
               
chr29:11612045-11611724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
126, 237
               

               
Conread position:
               
4-317
               

               
Cow position:
               
chr29:20243607-20243927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 16
               

               
Conread position:
               
4-319
               

               
Cow position:
               
chr29:3685323-3685631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
119, 77
               

               
Conread position:
               
4-319
               

               
Cow position:
               
chr29:12625800-12626099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
229, 80
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr29:28805953-28805636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
117, 93
               

               
Conread position:
               
4-329
               

               
Cow position:
               
chr29:28734849-28735174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
124, 72
               

               
Conread position:
               
4-331
               

               
Cow position:
               
chr29:15947367-15947040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
120, 228
               

               
Conread position:
               
4-346
               

               
Cow position:
               
chr29:36220741-36220382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
46, 180
               

               
Conread position:
               
4-349
               

               
Cow position:
               
chr29:17297336-17296982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr29:20910492-20910850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
124, 188
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr29:25814637-25814988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
123, 161
               

               
Conread position:
               
4-355
               

               
Cow position:
               
chr29:24624439-24624096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
111, 34
               

               
Conread position:
               
4-358
               

               
Cow position:
               
chr29:2056258-2055902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
31, 72
               

               
Conread position:
               
4-358
               

               
Cow position:
               
chr29:12025281-12025629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 32
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr29:31674829-31674471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
124, 65
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr29:5408944-5409307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
124, 84
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr29:39329385-39329754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
62, 246
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr29:732808-732458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
90, 47
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr29:1022492-1022130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
124, 53
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr29:11916019-11915657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr29:16657889-16657525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr29:19762461-19762113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
124, 34
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr29:19949503-19949150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr29:23845038-23844672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
123, 246
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr29:26275799-26275454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
69, 123
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr29:27816534-27816193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
124, 60
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr29:29942528-29942896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
128, 49
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr29:31489522-31489158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
89, 171
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr29:35405592-35405957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
115, 139
               

               
Conread position:
               
4-364
               

               
Cow position:
               
chr29:14501793-14501430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
110, 289
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chr29:10058345-10058704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chr29:17462581-17462953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
31, 83
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chr29:27668456-27668821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
86, 122
               

               
Conread position:
               
4-370
               

               
Cow position:
               
chr29:11397715-11398093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
80, 224
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr29:22068543-22068920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 120
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr29:31786872-31786505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
124, 45
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr29:34297373-34297737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
113, 89
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr29:41531049-41530677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 106
               

               
Conread position:
               
4-374
               

               
Cow position:
               
chr29:36531064-36530694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
124, 86
               

               
Conread position:
               
4-376
               

               
Cow position:
               
chr29:23874660-23874284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
120, 272
               

               
Conread position:
               
4-378
               

               
Cow position:
               
chr29:37618506-37618123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 271
               

               
Conread position:
               
4-384
               

               
Cow position:
               
chr29:22162066-22162439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
230, 31
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr29:16196053-16195658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
83, 193
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr29:21932923-21933307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
124, 53
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr29:35677343-35677739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 355
               

               
Conread position:
               
4-391
               

               
Cow position:
               
chr29:6337848-6337467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 10
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr29:699430-699812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
213, 129
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr29:3711574-3711190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
265, 168
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr29:5063341-5062935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
125, 72
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr29:11434310-11433926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
62, 34
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr29:17110151-17109775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
120, 34
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr29:22613619-22613231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
134, 34
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr29:22777983-22778378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
117, 31
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr29:23698168-23697782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
124, 34
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr29:32799505-32799899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 173
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr29:35501467-35501845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
69, 54
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr29:40891509-40891898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr29:4624800-4625190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
110, 10
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr29:9709891-9709502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr29:12680356-12679957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
87, 102
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr29:19756635-19756251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 31
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr29:25737222-25737612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
124, 11
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr29:28979318-28979677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
125, 29
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr29:35292284-35291902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 77
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr29:35458571-35458968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
113, 156
               

               
Conread position:
               
5-122
               

               
Cow position:
               
chr29:6716315-6716432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
5-160
               

               
Cow position:
               
chr29:4441008-4441165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
123, 86
               

               
Conread position:
               
5-250
               

               
Cow position:
               
chr29:33321546-33321304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
114, 169
               

               
Conread position:
               
5-289
               

               
Cow position:
               
chr29:23812851-23813126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
123, 30
               

               
Conread position:
               
5-306
               

               
Cow position:
               
chr29:5046850-5046545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
5-319
               

               
Cow position:
               
chr29:13028647-13028318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
75, 176
               

               
Conread position:
               
5-363
               

               
Cow position:
               
chr29:27834187-27833828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 50
               

               
Conread position:
               
5-390
               

               
Cow position:
               
chr29:28739824-28739434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
123, 237
               

               
Conread position:
               
5-393
               

               
Cow position:
               
chr29:12783758-12784152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 181
               

               
Conread position:
               
5-393
               

               
Cow position:
               
chr29:40117762-40117371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
6-297
               

               
Cow position:
               
chr29:8292717-8293014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
122, 189
               

               
Conread position:
               
6-391
               

               
Cow position:
               
chr29:7955792-7956179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 229
               

               
Conread position:
               
6-392
               

               
Cow position:
               
chr29:34745465-34745851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
6-393
               

               
Cow position:
               
chr29:22714514-22714925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
64, 202
               

               
Conread position:
               
7-285
               

               
Cow position:
               
chr29:32894452-32894182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
117, 64
               

               
Conread position:
               
7-359
               

               
Cow position:
               
chr29:25092299-25091953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
118, 65
               

               
Conread position:
               
7-392
               

               
Cow position:
               
chr29:2744074-2744468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 86
               

               
Conread position:
               
8-195
               

               
Cow position:
               
chr29:26539425-26539239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
120, 74
               

               
Conread position:
               
8-294
               

               
Cow position:
               
chr29:29188904-29189186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
123, 8
               

               
Conread position:
               
8-309
               

               
Cow position:
               
chr29:1008014-1007706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
8-360
               

               
Cow position:
               
chr29:28196826-28197166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
96, 27
               

               
Conread position:
               
8-361
               

               
Cow position:
               
chr29:363443-363096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
120, 16
               

               
Conread position:
               
8-363
               

               
Cow position:
               
chr29:5893040-5892687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
8-391
               

               
Cow position:
               
chr29:40583979-40583602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
86, 27
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr29:10653516-10653151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
97, 88
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr29:24952881-24952488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
120, 162
               

               
Conread position:
               
9-259
               

               
Cow position:
               
chr29:30681510-30681771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
62, 175
               

               
Conread position:
               
9-360
               

               
Cow position:
               
chr29:34773556-34773894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
69, 97
               

               
Conread position:
               
9-363
               

               
Cow position:
               
chr29:43099556-43099905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
119, 58
               

               
Conread position:
               
9-391
               

               
Cow position:
               
chr29:26259669-26259280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
119, 63
               

               
Conread position:
               
9-393
               

               
Cow position:
               
chr29:30441132-30440728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 344
               

               
Conread position:
               
10-271
               

               
Cow position:
               
chr29:32656628-32656359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
10-333
               

               
Cow position:
               
chr29:11667140-11666828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 96
               

               
Conread position:
               
10-358
               

               
Cow position:
               
chr29:2644129-2644463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
91, 49
               

               
Conread position:
               
12-392
               

               
Cow position:
               
chr29:21443151-21443540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
13-226
               

               
Cow position:
               
chr29:11227192-11227416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
14-345
               

               
Cow position:
               
chr29:27619069-27618736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
113, 129
               

               
Conread position:
               
14-388
               

               
Cow position:
               
chr29:18878294-18878693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
110, 21
               

               
Conread position:
               
15-344
               

               
Cow position:
               
chr29:24046185-24045846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
15-392
               

               
Cow position:
               
chr29:39111137-39111504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
220, 69
               

               
Conread position:
               
16-218
               

               
Cow position:
               
chr29:23825026-23825229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
16-234
               

               
Cow position:
               
chr29:29324234-29324455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
59, 152
               

               
Conread position:
               
16-359
               

               
Cow position:
               
chr29:26017314-26017669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 156
               

               
Conread position:
               
16-364
               

               
Cow position:
               
chr29:16609936-16609577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
18-392
               

               
Cow position:
               
chr29:19253645-19254019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
117, 39
               

               
Conread position:
               
19-224
               

               
Cow position:
               
chr29:22723779-22723576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
20-265
               

               
Cow position:
               
chr29:36632678-36632927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
104, 64
               

               
Conread position:
               
21-337
               

               
Cow position:
               
chr29:5121680-5122006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
111, 227
               

               
Conread position:
               
21-363
               

               
Cow position:
               
chr29:25475114-25474748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
21-392
               

               
Cow position:
               
chr29:34744450-34744813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
117, 17
               

               
Conread position:
               
22-363
               

               
Cow position:
               
chr29:38582150-38581812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
106, 161
               

               
Conread position:
               
23-368
               

               
Cow position:
               
chr29:19389659-19389316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
97, 199
               

               
Conread position:
               
23-391
               

               
Cow position:
               
chr29:4520511-4520140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
106, 70
               

               
Conread position:
               
23-392
               

               
Cow position:
               
chr29:18735470-18735839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
178, 110
               

               
Conread position:
               
24-323
               

               
Cow position:
               
chr29:17168583-17168280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
195, 145
               

               
Conread position:
               
27-363
               

               
Cow position:
               
chr29:3237176-3237517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
100, 180
               

               
Conread position:
               
30-277
               

               
Cow position:
               
chr29:38347855-38348107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
108, 207
               

               
Conread position:
               
33-345
               

               
Cow position:
               
chr29:29795211-29795533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
33-363
               

               
Cow position:
               
chr29:3100096-3100421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
28, 69
               

               
Conread position:
               
34-199
               

               
Cow position:
               
chr29:24051210-24051381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
34-395
               

               
Cow position:
               
chr29:12900382-12900745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
93, 187
               

               
Conread position:
               
38-363
               

               
Cow position:
               
chr29:856236-856577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
90, 179
               

               
Conread position:
               
39-298
               

               
Cow position:
               
chr29:30713554-30713807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
227, 81
               

               
Conread position:
               
39-363
               

               
Cow position:
               
chr29:9718612-9718932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
80, 38
               

               
Conread position:
               
39-373
               

               
Cow position:
               
chr29:8669518-8669194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
42-363
               

               
Cow position:
               
chr29:14112545-14112211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
75, 98
               

               
Conread position:
               
42-393
               

               
Cow position:
               
chr29:86844-87219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
42-393
               

               
Cow position:
               
chr29:13639203-13639564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
29, 224
               

               
Conread position:
               
49-363
               

               
Cow position:
               
chr29:31891383-31891686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
50-355
               

               
Cow position:
               
chr29:28166072-28166368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
63-363
               

               
Cow position:
               
chr29:23243737-23244043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
65, 160
               

               
Conread position:
               
69-319
               

               
Cow position:
               
chr29:21941735-21941479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
59, 5
               

               
Conread position:
               
69-326
               

               
Cow position:
               
chr29:20260729-20261001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
59, 213
               

               
Conread position:
               
69-359
               

               
Cow position:
               
chr29:32210936-32211215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 75
               

               
Conread position:
               
69-363
               

               
Cow position:
               
chr29:40959713-40960011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 115
               

               
Conread position:
               
70-374
               

               
Cow position:
               
chr29:10156172-10156473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
71-360
               

               
Cow position:
               
chr29:13372796-13372505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
57, 44
               

               
Conread position:
               
71-391
               

               
Cow position:
               
chr29:11705246-11704927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
71-392
               

               
Cow position:
               
chr29:25333328-25333650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
53, 94
               

               
Conread position:
               
72-384
               

               
Cow position:
               
chr29:11647226-11646915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 138
               

               
Conread position:
               
73-390
               

               
Cow position:
               
chr29:22175813-22175496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
11, 123
               

               
Conread position:
               
77-363
               

               
Cow position:
               
chr29:26653916-26654200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 162
               

               
Conread position:
               
77-363
               

               
Cow position:
               
chr29:29149798-29149506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 19
               

               
Conread position:
               
77-393
               

               
Cow position:
               
chr29:19339128-19338782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
81-390
               

               
Cow position:
               
chr29:6286038-6286352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
50, 151
               

               
Conread position:
               
81-392
               

               
Cow position:
               
chr29:706834-707142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
89-390
               

               
Cow position:
               
chr29:22936386-22936085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
31, 103
               

               
Conread position:
               
98-407
               

               
Cow position:
               
chr29:44008679-44008987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
102-392
               

               
Cow position:
               
chr29:11053758-11054050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
103-363
               

               
Cow position:
               
chr29:28868744-28868473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
26, 229
               

               
Conread position:
               
137-363
               

               
Cow position:
               
chr29:26771501-26771273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
137-392
               

               
Cow position:
               
chr29:9139483-9139212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
137-392
               

               
Cow position:
               
chr29:41365171-41364913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
131, 16
               

               
Conread position:
               
140-391
               

               
Cow position:
               
chr29:868834-868577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
129, 81
               

               
Conread position:
               
141-339
               

               
Cow position:
               
chr29:27329951-27329753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
128, 172
               

               
Conread position:
               
141-392
               

               
Cow position:
               
chr29:3704140-3704400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
142-393
               

               
Cow position:
               
chr29:17131562-17131805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
38, 24
               

               
Conread position:
               
145-393
               

               
Cow position:
               
chr29:36183335-36183078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 92
               

               
Conread position:
               
146-347
               

               
Cow position:
               
chr29:17301587-17301382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
147-363
               

               
Cow position:
               
chr29:23983903-23984122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
147-392
               

               
Cow position:
               
chr29:19428712-19428467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
8, 84
               

               
Conread position:
               
148-363
               

               
Cow position:
               
chr29:19792225-19792439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
119, 81
               

               
Conread position:
               
149-393
               

               
Cow position:
               
chr29:41747498-41747243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
153-392
               

               
Cow position:
               
chr29:31926243-31926487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
116, 80
               

               
Conread position:
               
162-363
               

               
Cow position:
               
chr29:1395634-1395436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 6
               

               
Conread position:
               
163-392
               

               
Cow position:
               
chr29:26330242-26330017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
130, 64
               

               
Conread position:
               
172-363
               

               
Cow position:
               
chr29:2533086-2532902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 58
               

               
Conread position:
               
173-393
               

               
Cow position:
               
chr29:11685033-11684815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
94, 72
               

               
Conread position:
               
174-381
               

               
Cow position:
               
chr29:14484512-14484731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
174-390
               

               
Cow position:
               
chr29:6926034-6925825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
93, 54
               

               
Conread position:
               
174-392
               

               
Cow position:
               
chr29:9912201-9911981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
56, 150
               

               
Conread position:
               
174-392
               

               
Cow position:
               
chr29:36217140-36216921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
95, 71
               

               
Conread position:
               
174-393
               

               
Cow position:
               
chr29:6293453-6293665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
95, 57
               

               
Conread position:
               
174-393
               

               
Cow position:
               
chr29:39643201-39642979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
140, 93
               

               
Conread position:
               
174-397
               

               
Cow position:
               
chr29:12004737-12004966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
178-363
               

               
Cow position:
               
chr29:25432418-25432240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
179-384
               

               
Cow position:
               
chr29:4334746-4334539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
183, 51
               

               
Conread position:
               
179-393
               

               
Cow position:
               
chr29:94537-94746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 38
               

               
Conread position:
               
183-392
               

               
Cow position:
               
chr29:26735045-26734837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
62, 73
               

               
Conread position:
               
184-360
               

               
Cow position:
               
chr29:19186755-19186589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
83, 53
               

               
Conread position:
               
186-388
               

               
Cow position:
               
chr29:11696543-11696341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
189-363
               

               
Cow position:
               
chr29:24252249-24252075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
63, 86
               

               
Conread position:
               
190-387
               

               
Cow position:
               
chr29:32290618-32290411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
191-318
               

               
Cow position:
               
chr29:11489712-11489841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
192-392
               

               
Cow position:
               
chr29:2984898-2984688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
195-359
               

               
Cow position:
               
chr29:40615517-40615681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 122
               

               
Conread position:
               
196-360
               

               
Cow position:
               
chr29:4495124-4494962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
204-392
               

               
Cow position:
               
chr29:35281493-35281304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
26, 45
               

               
Conread position:
               
205-360
               

               
Cow position:
               
chr29:8163863-8164017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
205-392
               

               
Cow position:
               
chr29:10818440-10818633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
64, 116
               

               
Conread position:
               
209-393
               

               
Cow position:
               
chr29:9686009-9686198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 108
               

               
Conread position:
               
213-361
               

               
Cow position:
               
chr29:45384113-45383964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
25, 103
               

               
Conread position:
               
215-388
               

               
Cow position:
               
chr29:3396092-3395918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
20, 107
               

               
Conread position:
               
224-363
               

               
Cow position:
               
chr29:32963532-32963395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
43, 87
               

               
Conread position:
               
227-363
               

               
Cow position:
               
chr29:26980372-26980236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 87
               

               
Conread position:
               
229-363
               

               
Cow position:
               
chr29:29940471-29940336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 8
               

               
Conread position:
               
229-373
               

               
Cow position:
               
chr29:2522538-2522402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
230-341
               

               
Cow position:
               
chr29:6217578-6217689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
39, 102
               

               
Conread position:
               
233-374
               

               
Cow position:
               
chr29:16757025-16756885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
233-411
               

               
Cow position:
               
chr29:26986895-26986721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
163, 33
               

               
Conread position:
               
237-392
               

               
Cow position:
               
chr29:12798882-12798733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 78
               

               
Conread position:
               
239-393
               

               
Cow position:
               
chr29:4805193-4805036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
243-392
               

               
Cow position:
               
chr29:4066043-4065890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
24, 72
               
Show alignments to all cow chromosomes.