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Cow genome map

           
Conread name:
           
Lym1-jns73_D06.f
        

               
Conread position:
               
1-122
               

               
Cow position:
               
chr5:55949449-55949569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr5:52032079-52032203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr5:74690023-74690148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr5:15413327-15413190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr5:12724162-12724322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr5:62996188-62996025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr5:57399022-57399224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
127, 173
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr5:17828248-17828471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr5:60514796-60515025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr5:2468982-2469208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
1-231
               

               
Cow position:
               
chr5:56059835-56060074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr5:52108029-52108296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 245
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr5:62812056-62811789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 177
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr5:41935424-41935716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
12, 174
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr5:43604368-43604083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
128, 90
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr5:37090408-37090712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 110
               

               
Conread position:
               
1-314
               

               
Cow position:
               
chr5:43403138-43402812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
1-315
               

               
Cow position:
               
chr5:61914800-61914481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 241
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr5:33834269-33833953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
127, 90
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr5:50575997-50575692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
266, 14
               

               
Conread position:
               
1-328
               

               
Cow position:
               
chr5:36650784-36650448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr5:31475913-31475579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
127, 232
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr5:12902148-12901800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 217
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr5:32338732-32339086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr5:49474325-49474670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
106, 92
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr5:64140767-64140399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
117, 94
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:39333300-39333671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
127, 72
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr5:44673934-44673555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
129, 251
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr5:24995992-24996359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr5:57767759-57768117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 34
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr5:62107255-62107627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
127, 216
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr5:63647248-63647609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 171
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr5:65967508-65967864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
127, 19
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr5:69338043-69337695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
127, 52
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr5:72952053-72951703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
231, 69
               

               
Conread position:
               
1-373
               

               
Cow position:
               
chr5:30276916-30276548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
40, 72
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr5:25495122-25495497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
91, 32
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr5:1247492-1247119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
62, 37
               

               
Conread position:
               
1-380
               

               
Cow position:
               
chr5:66582199-66581806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 118
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chr5:18289349-18288973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 74
               

               
Conread position:
               
1-386
               

               
Cow position:
               
chr5:42064436-42064039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 359
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr5:61726186-61725803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
127, 62
               

               
Conread position:
               
1-390
               

               
Cow position:
               
chr5:61576776-61576372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr5:15479358-15478944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 292
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr5:30253969-30253572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 67
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr5:32394831-32394431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 66
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr5:5856089-5855709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
70, 92
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr5:16937805-16938178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
322, 71
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr5:17371466-17371872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
83, 201
               

               
Conread position:
               
1-393
               

               
Cow position:
               
chr5:32975329-32975722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
115, 142
               

               
Conread position:
               
3-391
               

               
Cow position:
               
chr5:2309331-2309732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
4-116
               

               
Cow position:
               
chr5:45854727-45854613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
4-122
               

               
Cow position:
               
chr5:40740100-40740219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
4-122
               

               
Cow position:
               
chr5:41639368-41639486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-122
               

               
Cow position:
               
chr5:55749810-55749928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-127
               

               
Cow position:
               
chr5:24108832-24108955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-127
               

               
Cow position:
               
chr5:56624288-56624412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
4-131
               

               
Cow position:
               
chr5:13471335-13471208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
117, 91
               

               
Conread position:
               
4-158
               

               
Cow position:
               
chr5:54712842-54712996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
114, 134
               

               
Conread position:
               
4-160
               

               
Cow position:
               
chr5:30492565-30492727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
4-160
               

               
Cow position:
               
chr5:43611925-43611765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
4-167
               

               
Cow position:
               
chr5:59662831-59662998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
123, 87
               

               
Conread position:
               
4-168
               

               
Cow position:
               
chr5:17987667-17987835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
4-192
               

               
Cow position:
               
chr5:40122382-40122575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
4-197
               

               
Cow position:
               
chr5:24915299-24915499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr5:16185606-16185409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
125, 191
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr5:34288028-34288223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
124, 94
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr5:44196704-44196912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
120, 93
               

               
Conread position:
               
4-210
               

               
Cow position:
               
chr5:65552495-65552694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
4-216
               

               
Cow position:
               
chr5:55965666-55965883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
4-217
               

               
Cow position:
               
chr5:64060672-64060456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
124, 87
               

               
Conread position:
               
4-222
               

               
Cow position:
               
chr5:2240763-2240983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 186
               

               
Conread position:
               
4-225
               

               
Cow position:
               
chr5:5760083-5760311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
4-225
               

               
Cow position:
               
chr5:61049560-61049334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
4-227
               

               
Cow position:
               
chr5:63187650-63187883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr5:15364497-15364268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
96, 154
               

               
Conread position:
               
4-228
               

               
Cow position:
               
chr5:34914828-34915054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 95
               

               
Conread position:
               
4-230
               

               
Cow position:
               
chr5:12300137-12299907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 53
               

               
Conread position:
               
4-231
               

               
Cow position:
               
chr5:52853193-52852967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
121, 68
               

               
Conread position:
               
4-234
               

               
Cow position:
               
chr5:56613337-56613572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 76
               

               
Conread position:
               
4-249
               

               
Cow position:
               
chr5:34347507-34347751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
124, 152
               

               
Conread position:
               
4-258
               

               
Cow position:
               
chr5:55783735-55783978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
171, 117
               

               
Conread position:
               
4-260
               

               
Cow position:
               
chr5:26548917-26549175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
4-271
               

               
Cow position:
               
chr5:52001398-52001666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
120, 37
               

               
Conread position:
               
4-273
               

               
Cow position:
               
chr5:6443917-6444198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
73, 163
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr5:45405273-45404992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
24, 231
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr5:30419200-30418923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 31
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr5:57393077-57393354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
110, 217
               

               
Conread position:
               
4-284
               

               
Cow position:
               
chr5:63241205-63240918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
124, 245
               

               
Conread position:
               
4-286
               

               
Cow position:
               
chr5:11769498-11769208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
86, 169
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr5:52831704-52831382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
46, 244
               

               
Conread position:
               
4-315
               

               
Cow position:
               
chr5:19752527-19752216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 66
               

               
Conread position:
               
4-315
               

               
Cow position:
               
chr5:57526701-57527007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
197, 214
               

               
Conread position:
               
4-318
               

               
Cow position:
               
chr5:71015659-71015972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 63
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr5:25366325-25365994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
117, 27
               

               
Conread position:
               
4-333
               

               
Cow position:
               
chr5:43391251-43390923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
149, 10
               

               
Conread position:
               
4-334
               

               
Cow position:
               
chr5:43370967-43371305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
123, 202
               

               
Conread position:
               
4-338
               

               
Cow position:
               
chr5:35319334-35319684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 293
               

               
Conread position:
               
4-338
               

               
Cow position:
               
chr5:46681497-46681828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
120, 23
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr5:61999330-61999658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
103, 179
               

               
Conread position:
               
4-343
               

               
Cow position:
               
chr5:70678419-70678747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
124, 92
               

               
Conread position:
               
4-344
               

               
Cow position:
               
chr5:33560512-33560851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 66
               

               
Conread position:
               
4-346
               

               
Cow position:
               
chr5:7057171-7057525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
87, 149
               

               
Conread position:
               
4-346
               

               
Cow position:
               
chr5:49920151-49919805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
4-347
               

               
Cow position:
               
chr5:17086791-17087145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 92
               

               
Conread position:
               
4-352
               

               
Cow position:
               
chr5:37255107-37255455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 284
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr5:19335551-19335913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr5:48154237-48154603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr5:52126998-52126649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
110, 49
               

               
Conread position:
               
4-353
               

               
Cow position:
               
chr5:61600633-61600290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
123, 150
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr5:31096576-31096931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
124, 65
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr5:44028084-44028433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr5:46512542-46512895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
79, 34
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr5:48867521-48867884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
83, 94
               

               
Conread position:
               
4-359
               

               
Cow position:
               
chr5:57934894-57935241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
100, 66
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr5:991700-991333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
100, 84
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr5:44446649-44447001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
210, 112
               

               
Conread position:
               
4-360
               

               
Cow position:
               
chr5:59873190-59873538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 36
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:3582781-3582439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
69, 123
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:3626954-3627289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:11427010-11427374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 31
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:14550356-14550718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 231
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:21525386-21525032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
116, 25
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:21617681-21617322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:22242548-22242918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 54
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:25035028-25035378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 180
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:28224668-28224316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:29681320-29680941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:34562235-34561876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
124, 52
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:35208489-35208129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 178
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:47756998-47756636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
125, 91
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:47870828-47871183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 52
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:50858162-50857801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
124, 176
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:52164947-52165315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 154
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:52668265-52667894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 244
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:55068926-55068574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
124, 38
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:56524388-56524039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
219, 68
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:57591910-57591558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
118, 62
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:59081966-59082328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
95, 89
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:60952888-60952528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
128, 186
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:66972656-66972291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 45
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:70951666-70952012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
13, 119
               

               
Conread position:
               
4-363
               

               
Cow position:
               
chr5:73167787-73168134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
8, 69
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chr5:17999270-17999636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
124, 63
               

               
Conread position:
               
4-368
               

               
Cow position:
               
chr5:29097588-29097218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
4-372
               

               
Cow position:
               
chr5:29844487-29844134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
172, 67
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr5:31469365-31469730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
128, 196
               

               
Conread position:
               
4-373
               

               
Cow position:
               
chr5:35459070-35459440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
4-374
               

               
Cow position:
               
chr5:19778340-19778726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
75, 114
               

               
Conread position:
               
4-379
               

               
Cow position:
               
chr5:39937342-39936951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 17
               

               
Conread position:
               
4-381
               

               
Cow position:
               
chr5:26990613-26990239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
4-381
               

               
Cow position:
               
chr5:43858192-43858590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 178
               

               
Conread position:
               
4-384
               

               
Cow position:
               
chr5:9893899-9894288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
124, 34
               

               
Conread position:
               
4-389
               

               
Cow position:
               
chr5:12149777-12149379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
28, 297
               

               
Conread position:
               
4-389
               

               
Cow position:
               
chr5:30628927-30629324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
88, 108
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr5:3549579-3549945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
219, 63
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr5:11667958-11668346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr5:18899182-18898816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr5:26467853-26467452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
124, 27
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr5:44049926-44049535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
128, 180
               

               
Conread position:
               
4-390
               

               
Cow position:
               
chr5:56028319-56028698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
124, 82
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:58704-59098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
75, 289
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:3242268-3242643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 115
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:5257061-5257466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
65, 75
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:7044480-7044880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
124, 77
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:14903838-14904243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
7, 47
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:18574408-18574001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 299
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:30178276-30178680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
123, 259
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:30303107-30302726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
214, 91
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:34505698-34506095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
110, 271
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:34976614-34977009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:35969766-35969373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 194
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:36868963-36868576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
120, 243
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:40152713-40152306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:45845464-45845865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:47602034-47601647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
124, 53
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:50723274-50722877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 227
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:53842517-53842119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 59
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:57074111-57074504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:72034874-72035254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
97, 10
               

               
Conread position:
               
4-392
               

               
Cow position:
               
chr5:74643458-74643831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
124, 67
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr5:34625174-34624798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
171, 72
               

               
Conread position:
               
4-393
               

               
Cow position:
               
chr5:65941024-65941424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
42, 77
               

               
Conread position:
               
4-394
               

               
Cow position:
               
chr5:53055333-53055725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
123, 286
               

               
Conread position:
               
4-397
               

               
Cow position:
               
chr5:12322585-12322975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
124, 80
               

               
Conread position:
               
4-417
               

               
Cow position:
               
chr5:56014948-56014540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
79, 66
               

               
Conread position:
               
5-160
               

               
Cow position:
               
chr5:57447439-57447599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
5-167
               

               
Cow position:
               
chr5:35235462-35235629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chr5:44810012-44810237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
5-225
               

               
Cow position:
               
chr5:70749961-70750183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
123, 199
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr5:57101301-57101561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
106, 91
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr5:30247300-30247557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
228, 0
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chr5:7012624-7012908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
116, 164
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr5:20288033-20288328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
5-312
               

               
Cow position:
               
chr5:61771349-61771028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 172
               

               
Conread position:
               
5-320
               

               
Cow position:
               
chr5:59384461-59384784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr5:30233135-30232802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
101, 324
               

               
Conread position:
               
5-329
               

               
Cow position:
               
chr5:36038780-36039106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
123, 46
               

               
Conread position:
               
5-354
               

               
Cow position:
               
chr5:55756188-55756558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
5-363
               

               
Cow position:
               
chr5:5110833-5111209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
5-363
               

               
Cow position:
               
chr5:11229446-11229805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
80, 47
               

               
Conread position:
               
5-363
               

               
Cow position:
               
chr5:19278478-19278836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 111
               

               
Conread position:
               
5-363
               

               
Cow position:
               
chr5:55966648-55967015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
66, 223
               

               
Conread position:
               
5-390
               

               
Cow position:
               
chr5:21829089-21828697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 30
               

               
Conread position:
               
5-390
               

               
Cow position:
               
chr5:72903015-72903395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 76
               

               
Conread position:
               
5-392
               

               
Cow position:
               
chr5:3772067-3771677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
122, 77
               

               
Conread position:
               
5-392
               

               
Cow position:
               
chr5:12873977-12873574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 91
               

               
Conread position:
               
5-392
               

               
Cow position:
               
chr5:16893553-16893945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
123, 67
               

               
Conread position:
               
5-392
               

               
Cow position:
               
chr5:38833339-38832950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
123, 30
               

               
Conread position:
               
6-284
               

               
Cow position:
               
chr5:61456071-61455787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
6-303
               

               
Cow position:
               
chr5:57755810-57756108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
121, 60
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr5:49668707-49668400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
95, 30
               

               
Conread position:
               
6-360
               

               
Cow position:
               
chr5:22738321-22737975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
181, 81
               

               
Conread position:
               
6-363
               

               
Cow position:
               
chr5:4221206-4220848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
35, 30
               

               
Conread position:
               
6-363
               

               
Cow position:
               
chr5:12760896-12761252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
132, 89
               

               
Conread position:
               
6-363
               

               
Cow position:
               
chr5:14314740-14314389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
213, 82
               

               
Conread position:
               
6-392
               

               
Cow position:
               
chr5:39447301-39447700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
69, 237
               

               
Conread position:
               
6-392
               

               
Cow position:
               
chr5:40109708-40109332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
122, 66
               

               
Conread position:
               
6-392
               

               
Cow position:
               
chr5:44847803-44848186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
122, 81
               

               
Conread position:
               
6-392
               

               
Cow position:
               
chr5:51053424-51053817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 31
               

               
Conread position:
               
6-392
               

               
Cow position:
               
chr5:53835945-53835545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
69, 320
               

               
Conread position:
               
6-392
               

               
Cow position:
               
chr5:64175906-64176290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
122, 70
               

               
Conread position:
               
7-122
               

               
Cow position:
               
chr5:45337197-45337311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
7-264
               

               
Cow position:
               
chr5:50101155-50101415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
117, 65
               

               
Conread position:
               
7-355
               

               
Cow position:
               
chr5:41226781-41227112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
147, 114
               

               
Conread position:
               
7-373
               

               
Cow position:
               
chr5:35228921-35229270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
121, 31
               

               
Conread position:
               
7-392
               

               
Cow position:
               
chr5:4280667-4280294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
7-394
               

               
Cow position:
               
chr5:11539829-11540215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 123
               

               
Conread position:
               
8-198
               

               
Cow position:
               
chr5:29256486-29256678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
126, 87
               

               
Conread position:
               
8-200
               

               
Cow position:
               
chr5:49821653-49821455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
8-228
               

               
Cow position:
               
chr5:39036004-39035779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
92, 111
               

               
Conread position:
               
8-234
               

               
Cow position:
               
chr5:69383473-69383248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
120, 64
               

               
Conread position:
               
8-282
               

               
Cow position:
               
chr5:20994867-20995151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
117, 34
               

               
Conread position:
               
8-285
               

               
Cow position:
               
chr5:33032390-33032114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
88, 30
               

               
Conread position:
               
8-324
               

               
Cow position:
               
chr5:64555753-64555433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
106, 216
               

               
Conread position:
               
8-373
               

               
Cow position:
               
chr5:35246885-35247256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 209
               

               
Conread position:
               
8-381
               

               
Cow position:
               
chr5:41165304-41164935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 118
               

               
Conread position:
               
8-391
               

               
Cow position:
               
chr5:72895908-72895524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
117, 87
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr5:28330119-28330501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
120, 210
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr5:30487449-30487074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
86, 118
               

               
Conread position:
               
8-392
               

               
Cow position:
               
chr5:44993817-44994207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
15, 157
               

               
Conread position:
               
8-393
               

               
Cow position:
               
chr5:29828270-29827883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 89
               

               
Conread position:
               
8-393
               

               
Cow position:
               
chr5:44796514-44796889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
112, 52
               

               
Conread position:
               
9-392
               

               
Cow position:
               
chr5:20128275-20127884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 226
               

               
Conread position:
               
10-265
               

               
Cow position:
               
chr5:61784505-61784766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 160
               

               
Conread position:
               
10-319
               

               
Cow position:
               
chr5:63234602-63234922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 184
               

               
Conread position:
               
10-339
               

               
Cow position:
               
chr5:71845706-71846036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
10-346
               

               
Cow position:
               
chr5:16179303-16179644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 166
               

               
Conread position:
               
10-363
               

               
Cow position:
               
chr5:55177100-55176754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
153, 36
               

               
Conread position:
               
10-364
               

               
Cow position:
               
chr5:47703901-47704267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
7, 247
               

               
Conread position:
               
10-364
               

               
Cow position:
               
chr5:67932246-67932598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 166
               

               
Conread position:
               
10-374
               

               
Cow position:
               
chr5:55956130-55955763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 113
               

               
Conread position:
               
10-392
               

               
Cow position:
               
chr5:42845377-42845770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
117, 29
               

               
Conread position:
               
11-363
               

               
Cow position:
               
chr5:50600265-50599921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
117, 69
               

               
Conread position:
               
11-381
               

               
Cow position:
               
chr5:20779180-20779540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
121, 82
               

               
Conread position:
               
12-363
               

               
Cow position:
               
chr5:56071076-56070720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 87
               

               
Conread position:
               
12-364
               

               
Cow position:
               
chr5:30845324-30844976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
107, 60
               

               
Conread position:
               
13-317
               

               
Cow position:
               
chr5:59395881-59395565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
115, 226
               

               
Conread position:
               
13-328
               

               
Cow position:
               
chr5:53947116-53946794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
112, 309
               

               
Conread position:
               
13-392
               

               
Cow position:
               
chr5:34050325-34049940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
204, 105
               

               
Conread position:
               
13-392
               

               
Cow position:
               
chr5:58144387-58144773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
70, 20
               

               
Conread position:
               
13-393
               

               
Cow position:
               
chr5:48009664-48010017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
252, 43
               

               
Conread position:
               
14-293
               

               
Cow position:
               
chr5:61007280-61006999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
114, 21
               

               
Conread position:
               
15-324
               

               
Cow position:
               
chr5:17554820-17555129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 65
               

               
Conread position:
               
15-331
               

               
Cow position:
               
chr5:64523649-64523971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
109, 78
               

               
Conread position:
               
15-363
               

               
Cow position:
               
chr5:37065314-37064961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
117, 97
               

               
Conread position:
               
15-364
               

               
Cow position:
               
chr5:17062864-17063228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
114, 314
               

               
Conread position:
               
15-391
               

               
Cow position:
               
chr5:6503661-6504048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 281
               

               
Conread position:
               
16-196
               

               
Cow position:
               
chr5:53980538-53980723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
16-286
               

               
Cow position:
               
chr5:35123307-35123574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 78
               

               
Conread position:
               
16-294
               

               
Cow position:
               
chr5:57994666-57994933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
159, 20
               

               
Conread position:
               
16-359
               

               
Cow position:
               
chr5:57328011-57327664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
112, 56
               

               
Conread position:
               
16-392
               

               
Cow position:
               
chr5:26377466-26377836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 90
               

               
Conread position:
               
17-363
               

               
Cow position:
               
chr5:35826811-35826469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
21, 113
               

               
Conread position:
               
18-333
               

               
Cow position:
               
chr5:64168025-64168346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
87, 142
               

               
Conread position:
               
20-245
               

               
Cow position:
               
chr5:16939382-16939610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 208
               

               
Conread position:
               
20-392
               

               
Cow position:
               
chr5:24349300-24348942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 16
               

               
Conread position:
               
21-339
               

               
Cow position:
               
chr5:60016373-60016055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
133, 72
               

               
Conread position:
               
21-374
               

               
Cow position:
               
chr5:12673271-12673606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
107, 77
               

               
Conread position:
               
21-390
               

               
Cow position:
               
chr5:33414199-33414576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
107, 76
               

               
Conread position:
               
21-392
               

               
Cow position:
               
chr5:26097499-26097126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
107, 75
               

               
Conread position:
               
22-368
               

               
Cow position:
               
chr5:45397773-45397437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
106, 16
               

               
Conread position:
               
22-392
               

               
Cow position:
               
chr5:65753068-65752687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
39, 79
               

               
Conread position:
               
23-391
               

               
Cow position:
               
chr5:45225613-45225993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
105, 63
               

               
Conread position:
               
23-392
               

               
Cow position:
               
chr5:64137465-64137082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
23-393
               

               
Cow position:
               
chr5:6286241-6286597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 64
               

               
Conread position:
               
23-398
               

               
Cow position:
               
chr5:64697995-64697605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
69, 160
               

               
Conread position:
               
24-361
               

               
Cow position:
               
chr5:57419590-57419928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
104, 51
               

               
Conread position:
               
27-363
               

               
Cow position:
               
chr5:4506760-4507093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
98, 196
               

               
Conread position:
               
27-363
               

               
Cow position:
               
chr5:33080606-33080925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
149, 50
               

               
Conread position:
               
27-363
               

               
Cow position:
               
chr5:48829358-48829022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
101, 64
               

               
Conread position:
               
27-363
               

               
Cow position:
               
chr5:57265699-57266030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 222
               

               
Conread position:
               
27-363
               

               
Cow position:
               
chr5:64026812-64027144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
44, 200
               

               
Conread position:
               
27-392
               

               
Cow position:
               
chr5:5938529-5938155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
61, 213
               

               
Conread position:
               
27-392
               

               
Cow position:
               
chr5:52040118-52040489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
100, 190
               

               
Conread position:
               
29-363
               

               
Cow position:
               
chr5:20554563-20554882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
238, 83
               

               
Conread position:
               
33-363
               

               
Cow position:
               
chr5:68872392-68872059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
94, 138
               

               
Conread position:
               
34-390
               

               
Cow position:
               
chr5:69461531-69461167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
93, 48
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr5:61492291-61492019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
49, 201
               

               
Conread position:
               
39-363
               

               
Cow position:
               
chr5:66366700-66366381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
46, 68
               

               
Conread position:
               
41-387
               

               
Cow position:
               
chr5:71495011-71494653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
77, 28
               

               
Conread position:
               
43-392
               

               
Cow position:
               
chr5:28248362-28248007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 205
               

               
Conread position:
               
54-392
               

               
Cow position:
               
chr5:12710056-12709716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
178, 55
               

               
Conread position:
               
57-360
               

               
Cow position:
               
chr5:30949740-30950049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
71, 264
               

               
Conread position:
               
57-392
               

               
Cow position:
               
chr5:26093991-26094339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
67, 212
               

               
Conread position:
               
59-363
               

               
Cow position:
               
chr5:37646377-37646682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 27
               

               
Conread position:
               
65-345
               

               
Cow position:
               
chr5:19524067-19523779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
67, 189
               

               
Conread position:
               
69-324
               

               
Cow position:
               
chr5:55019458-55019196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
24, 173
               

               
Conread position:
               
70-346
               

               
Cow position:
               
chr5:26476856-26477131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 133
               

               
Conread position:
               
70-355
               

               
Cow position:
               
chr5:16205993-16206284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 126
               

               
Conread position:
               
70-359
               

               
Cow position:
               
chr5:54767747-54768042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
48, 139
               

               
Conread position:
               
70-360
               

               
Cow position:
               
chr5:54060438-54060144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
50, 107
               

               
Conread position:
               
70-363
               

               
Cow position:
               
chr5:37189935-37190231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
58, 179
               

               
Conread position:
               
70-392
               

               
Cow position:
               
chr5:9089866-9090193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
199, 160
               

               
Conread position:
               
70-392
               

               
Cow position:
               
chr5:59115539-59115211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
70-411
               

               
Cow position:
               
chr5:43992486-43992131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
71-350
               

               
Cow position:
               
chr5:53710528-53710816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
57, 285
               

               
Conread position:
               
71-392
               

               
Cow position:
               
chr5:63987284-63987616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
23, 99
               

               
Conread position:
               
71-396
               

               
Cow position:
               
chr5:3204987-3204661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 41
               

               
Conread position:
               
73-363
               

               
Cow position:
               
chr5:36255098-36255396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 229
               

               
Conread position:
               
74-366
               

               
Cow position:
               
chr5:14473245-14473554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 289
               

               
Conread position:
               
77-328
               

               
Cow position:
               
chr5:41294237-41293979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
22, 5
               

               
Conread position:
               
77-392
               

               
Cow position:
               
chr5:458641-458312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
78-388
               

               
Cow position:
               
chr5:36855360-36855047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 158
               

               
Conread position:
               
78-392
               

               
Cow position:
               
chr5:54311490-54311163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
79-336
               

               
Cow position:
               
chr5:35126208-35125945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
41, 250
               

               
Conread position:
               
81-339
               

               
Cow position:
               
chr5:7698151-7697893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 160
               

               
Conread position:
               
81-362
               

               
Cow position:
               
chr5:45273351-45273636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 168
               

               
Conread position:
               
81-391
               

               
Cow position:
               
chr5:50215413-50215728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
38, 43
               

               
Conread position:
               
82-359
               

               
Cow position:
               
chr5:57575925-57575636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
14, 250
               

               
Conread position:
               
88-392
               

               
Cow position:
               
chr5:72564908-72564592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
89-359
               

               
Cow position:
               
chr5:47323605-47323322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
40, 109
               

               
Conread position:
               
89-392
               

               
Cow position:
               
chr5:37808520-37808834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 166
               

               
Conread position:
               
90-393
               

               
Cow position:
               
chr5:6528827-6528510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
39, 205
               

               
Conread position:
               
96-392
               

               
Cow position:
               
chr5:6045432-6045118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
32, 235
               

               
Conread position:
               
100-392
               

               
Cow position:
               
chr5:58856234-58855934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
101-363
               

               
Cow position:
               
chr5:50821914-50821646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
27, 116
               

               
Conread position:
               
102-392
               

               
Cow position:
               
chr5:15598108-15598403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 166
               

               
Conread position:
               
109-373
               

               
Cow position:
               
chr5:47547603-47547863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
126-360
               

               
Cow position:
               
chr5:39875225-39874990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
135-394
               

               
Cow position:
               
chr5:32696730-32696984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
136-359
               

               
Cow position:
               
chr5:67540110-67540335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 134
               

               
Conread position:
               
136-390
               

               
Cow position:
               
chr5:50637912-50637662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
131, 52
               

               
Conread position:
               
136-392
               

               
Cow position:
               
chr5:61840279-61840017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
133, 84
               

               
Conread position:
               
137-363
               

               
Cow position:
               
chr5:63865885-63865659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
101, 41
               

               
Conread position:
               
137-363
               

               
Cow position:
               
chr5:65883682-65883912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
39, 35
               

               
Conread position:
               
137-390
               

               
Cow position:
               
chr5:65601547-65601293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
137-392
               

               
Cow position:
               
chr5:29213028-29212779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
92, 25
               

               
Conread position:
               
137-392
               

               
Cow position:
               
chr5:31481238-31480985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
93, 150
               

               
Conread position:
               
137-392
               

               
Cow position:
               
chr5:46509775-46510036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
104, 156
               

               
Conread position:
               
137-392
               

               
Cow position:
               
chr5:57737189-57736945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
132, 75
               

               
Conread position:
               
137-392
               

               
Cow position:
               
chr5:62142766-62142501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
92, 157
               

               
Conread position:
               
140-340
               

               
Cow position:
               
chr5:13717482-13717684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
127, 58
               

               
Conread position:
               
140-363
               

               
Cow position:
               
chr5:38719126-38718902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
127, 93
               

               
Conread position:
               
146-363
               

               
Cow position:
               
chr5:47313554-47313337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
87, 51
               

               
Conread position:
               
146-373
               

               
Cow position:
               
chr5:46122272-46122499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
123, 75
               

               
Conread position:
               
146-382
               

               
Cow position:
               
chr5:31144706-31144941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 175
               

               
Conread position:
               
146-390
               

               
Cow position:
               
chr5:34638965-34638718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
123, 175
               

               
Conread position:
               
146-390
               

               
Cow position:
               
chr5:42744867-42744626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
88, 122
               

               
Conread position:
               
147-360
               

               
Cow position:
               
chr5:28926100-28926317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
81, 102
               

               
Conread position:
               
147-363
               

               
Cow position:
               
chr5:63964089-63964305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
70, 102
               

               
Conread position:
               
149-397
               

               
Cow position:
               
chr5:32140630-32140882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
150-363
               

               
Cow position:
               
chr5:21920457-21920235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
154-392
               

               
Cow position:
               
chr5:21964362-21964122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 76
               

               
Conread position:
               
156-356
               

               
Cow position:
               
chr5:56680322-56680118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
61, 94
               

               
Conread position:
               
163-392
               

               
Cow position:
               
chr5:2500115-2500358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
166-392
               

               
Cow position:
               
chr5:35235648-35235878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
168-390
               

               
Cow position:
               
chr5:59443193-59443419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 20
               

               
Conread position:
               
171-392
               

               
Cow position:
               
chr5:41522744-41522965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 92
               

               
Conread position:
               
174-360
               

               
Cow position:
               
chr5:34300972-34300783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 144
               

               
Conread position:
               
174-363
               

               
Cow position:
               
chr5:29979929-29980118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 131
               

               
Conread position:
               
174-363
               

               
Cow position:
               
chr5:49361939-49362124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
142, 63
               

               
Conread position:
               
174-363
               

               
Cow position:
               
chr5:52000276-52000086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
60, 148
               

               
Conread position:
               
174-363
               

               
Cow position:
               
chr5:54404837-54405028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
174-368
               

               
Cow position:
               
chr5:51800919-51801111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
93, 168
               

               
Conread position:
               
174-391
               

               
Cow position:
               
chr5:41486684-41486906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
174-392
               

               
Cow position:
               
chr5:28927532-28927762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 145
               

               
Conread position:
               
178-390
               

               
Cow position:
               
chr5:26790406-26790619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
56, 65
               

               
Conread position:
               
179-337
               

               
Cow position:
               
chr5:60448264-60448105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
179-360
               

               
Cow position:
               
chr5:67463013-67462833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
179-392
               

               
Cow position:
               
chr5:34115701-34115493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
38, 139
               

               
Conread position:
               
180-390
               

               
Cow position:
               
chr5:24485387-24485593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
58, 124
               

               
Conread position:
               
181-359
               

               
Cow position:
               
chr5:50972576-50972398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
133, 75
               

               
Conread position:
               
181-392
               

               
Cow position:
               
chr5:7140060-7140274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 180
               

               
Conread position:
               
184-363
               

               
Cow position:
               
chr5:42705304-42705128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
184-363
               

               
Cow position:
               
chr5:49821183-49821007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
137, 61
               

               
Conread position:
               
184-392
               

               
Cow position:
               
chr5:51490721-51490924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
85, 33
               

               
Conread position:
               
187-393
               

               
Cow position:
               
chr5:8994525-8994736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
188-345
               

               
Cow position:
               
chr5:16509139-16508977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
190-353
               

               
Cow position:
               
chr5:21944435-21944269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
27, 151
               

               
Conread position:
               
190-360
               

               
Cow position:
               
chr5:69047327-69047495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
79, 15
               

               
Conread position:
               
190-373
               

               
Cow position:
               
chr5:71579213-71579028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
190-392
               

               
Cow position:
               
chr5:17644617-17644825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
195-359
               

               
Cow position:
               
chr5:50975934-50975760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 136
               

               
Conread position:
               
195-363
               

               
Cow position:
               
chr5:59777662-59777831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
195-368
               

               
Cow position:
               
chr5:7921372-7921541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
74, 35
               

               
Conread position:
               
195-392
               

               
Cow position:
               
chr5:16185120-16184920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 127
               

               
Conread position:
               
195-392
               

               
Cow position:
               
chr5:30638831-30639022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
195-392
               

               
Cow position:
               
chr5:43474877-43474678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
74, 35
               

               
Conread position:
               
195-398
               

               
Cow position:
               
chr5:6130386-6130177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
196-360
               

               
Cow position:
               
chr5:31222884-31223048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
71, 41
               

               
Conread position:
               
201-353
               

               
Cow position:
               
chr5:9859685-9859839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
204-380
               

               
Cow position:
               
chr5:44849708-44849884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
143, 31
               

               
Conread position:
               
204-392
               

               
Cow position:
               
chr5:56134941-56135138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
19, 98
               

               
Conread position:
               
204-393
               

               
Cow position:
               
chr5:75230698-75230513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
220-374
               

               
Cow position:
               
chr5:40356857-40357013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
16, 148
               

               
Conread position:
               
220-389
               

               
Cow position:
               
chr5:18090732-18090561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
222-363
               

               
Cow position:
               
chr5:43816605-43816744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
222-392
               

               
Cow position:
               
chr5:56820257-56820431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 92
               

               
Conread position:
               
223-355
               

               
Cow position:
               
chr5:47721543-47721410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
223-368
               

               
Cow position:
               
chr5:19294487-19294627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
223-392
               

               
Cow position:
               
chr5:64844128-64844287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
227-360
               

               
Cow position:
               
chr5:31020140-31020268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
227-388
               

               
Cow position:
               
chr5:32956096-32956261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
227-390
               

               
Cow position:
               
chr5:44752317-44752478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
133, 40
               

               
Conread position:
               
227-392
               

               
Cow position:
               
chr5:40039771-40039940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
42, 18
               

               
Conread position:
               
228-373
               

               
Cow position:
               
chr5:65932930-65933077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
41, 5
               

               
Conread position:
               
230-392
               

               
Cow position:
               
chr5:72150244-72150082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 92
               

               
Conread position:
               
231-391
               

               
Cow position:
               
chr5:42748153-42747987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
232-387
               

               
Cow position:
               
chr5:6575596-6575752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 40
               

               
Conread position:
               
233-360
               

               
Cow position:
               
chr5:56433798-56433671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 82
               

               
Conread position:
               
233-392
               

               
Cow position:
               
chr5:32963637-32963799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 43
               

               
Conread position:
               
233-392
               

               
Cow position:
               
chr5:45037015-45036852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
36, 76
               

               
Conread position:
               
233-392
               

               
Cow position:
               
chr5:56518217-56518379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
31, 12
               

               
Conread position:
               
233-394
               

               
Cow position:
               
chr5:39242204-39242361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
237-392
               

               
Cow position:
               
chr5:3492185-3492032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
32, 108
               

               
Conread position:
               
237-392
               

               
Cow position:
               
chr5:57271275-57271434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
238-363
               

               
Cow position:
               
chr5:30816708-30816583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
238-392
               

               
Cow position:
               
chr5:60520151-60519997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
31, 77
               

               
Conread position:
               
261-392
               

               
Cow position:
               
chr5:45025953-45026087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
109, 15
               

               
Conread position:
               
266-392
               

               
Cow position:
               
chr5:15462675-15462544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               
Show alignments to all cow chromosomes.