Non-Coding RNA Search

Cow genome map


           Conread name:
           Lym1-jns73_D06.f
        

               Conread position:
               1-115
               

               Cow position:
               chrX:18196231-18196116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               91
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               1-122
               

               Cow position:
               chrX:1938244-1938125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               95
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               1-122
               

               Cow position:
               chrX:8642276-8642155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               97
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-122
               

               Cow position:
               chrX:42159173-42159052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               94
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1-158
               

               Cow position:
               chrX:16801036-16801193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               123, 37
               

               Conread position:
               1-160
               

               Cow position:
               chrX:41011121-41010966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               125
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               127, 37
               

               Conread position:
               1-167
               

               Cow position:
               chrX:597247-597413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               127, 141
               

               Conread position:
               1-183
               

               Cow position:
               chrX:35409983-35409797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               1-198
               

               Cow position:
               chrX:4092153-4091954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               127, 34
               

               Conread position:
               1-203
               

               Cow position:
               chrX:44040408-44040206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               123, 171
               

               Conread position:
               1-243
               

               Cow position:
               chrX:42480058-42479817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               34, 39
               

               Conread position:
               1-282
               

               Cow position:
               chrX:5134705-5134420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               191
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               64, 154
               

               Conread position:
               1-285
               

               Cow position:
               chrX:5063467-5063195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               1-309
               

               Cow position:
               chrX:22284070-22283750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               116, 158
               

               Conread position:
               1-315
               

               Cow position:
               chrX:40680846-40680523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1-316
               

               Cow position:
               chrX:31489752-31489431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               126, 173
               

               Conread position:
               1-322
               

               Cow position:
               chrX:27261421-27261093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               232
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               127, 32
               

               Conread position:
               1-325
               

               Cow position:
               chrX:12095540-12095871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 244
               

               Conread position:
               1-330
               

               Cow position:
               chrX:21328145-21327801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               234
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               1-339
               

               Cow position:
               chrX:17949261-17949601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               242
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               127, 95
               

               Conread position:
               1-347
               

               Cow position:
               chrX:4512476-4512115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               129, 111
               

               Conread position:
               1-360
               

               Cow position:
               chrX:9201774-9201418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               37, 72
               

               Conread position:
               1-360
               

               Cow position:
               chrX:25035150-25035516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               248
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               123, 231
               

               Conread position:
               1-360
               

               Cow position:
               chrX:25207630-25207975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               257
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               127, 71
               

               Conread position:
               1-360
               

               Cow position:
               chrX:36283571-36283217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               255
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               123, 203
               

               Conread position:
               1-363
               

               Cow position:
               chrX:15231428-15231789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               127, 246
               

               Conread position:
               1-363
               

               Cow position:
               chrX:18204235-18204598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               76, 34
               

               Conread position:
               1-363
               

               Cow position:
               chrX:18486034-18485663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               129, 105
               

               Conread position:
               1-363
               

               Cow position:
               chrX:21672796-21672420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 244
               

               Conread position:
               1-363
               

               Cow position:
               chrX:29723982-29723606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 261
               

               Conread position:
               1-363
               

               Cow position:
               chrX:46532259-46532641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               1-364
               

               Cow position:
               chrX:4399349-4398993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               260
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               117, 87
               

               Conread position:
               1-365
               

               Cow position:
               chrX:22387012-22387380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               80, 34
               

               Conread position:
               1-374
               

               Cow position:
               chrX:21593522-21593142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               259
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               84, 34
               

               Conread position:
               1-379
               

               Cow position:
               chrX:24332008-24331632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               261
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               127, 225
               

               Conread position:
               1-392
               

               Cow position:
               chrX:3580176-3579776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 237
               

               Conread position:
               1-392
               

               Cow position:
               chrX:4632623-4633019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 234
               

               Conread position:
               1-392
               

               Cow position:
               chrX:7179114-7178739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               264
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               127, 39
               

               Conread position:
               1-392
               

               Cow position:
               chrX:7722205-7721816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               277
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               86, 34
               

               Conread position:
               1-392
               

               Cow position:
               chrX:9425531-9425910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               269
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               100, 60
               

               Conread position:
               1-392
               

               Cow position:
               chrX:27508793-27509188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               268
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               93, 303
               

               Conread position:
               1-392
               

               Cow position:
               chrX:28013209-28013608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               270
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               107, 37
               

               Conread position:
               1-392
               

               Cow position:
               chrX:34554955-34554560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               270
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               127, 236
               

               Conread position:
               1-392
               

               Cow position:
               chrX:38549678-38549280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 67
               

               Conread position:
               1-392
               

               Cow position:
               chrX:41790196-41790613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               271
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               62, 69
               

               Conread position:
               1-393
               

               Cow position:
               chrX:13177253-13177634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               281
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               127, 34
               

               Conread position:
               2-223
               

               Cow position:
               chrX:35392074-35392289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               6, 37
               

               Conread position:
               2-374
               

               Cow position:
               chrX:36061390-36061010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               250
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               6, 372
               

               Conread position:
               3-264
               

               Cow position:
               chrX:28940473-28940210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               125, 82
               

               Conread position:
               3-363
               

               Cow position:
               chrX:34412077-34411709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               254
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               60, 230
               

               Conread position:
               3-393
               

               Cow position:
               chrX:31442610-31442991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               274
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               126, 70
               

               Conread position:
               4-117
               

               Cow position:
               chrX:19161902-19162015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               91
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-122
               

               Cow position:
               chrX:11670915-11670797 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               92
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               4-122
               

               Cow position:
               chrX:42506718-42506838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               94
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               4-127
               

               Cow position:
               chrX:51674-51795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               4-136
               

               Cow position:
               chrX:1996223-1996357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               107
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               4-137
               

               Cow position:
               chrX:14135903-14135772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               117, 74
               

               Conread position:
               4-160
               

               Cow position:
               chrX:9451569-9451413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               118
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               76, 56
               

               Conread position:
               4-165
               

               Cow position:
               chrX:41215551-41215385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               4-165
               

               Cow position:
               chrX:42760481-42760315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               4-166
               

               Cow position:
               chrX:8759851-8759688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               109, 144
               

               Conread position:
               4-166
               

               Cow position:
               chrX:17498551-17498384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               4-170
               

               Cow position:
               chrX:6480367-6480538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               122
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               4-193
               

               Cow position:
               chrX:1960197-1960390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               116, 71
               

               Conread position:
               4-197
               

               Cow position:
               chrX:18439225-18439027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               110, 0
               

               Conread position:
               4-200
               

               Cow position:
               chrX:2314390-2314591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               4-206
               

               Cow position:
               chrX:34398555-34398762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               4-208
               

               Cow position:
               chrX:24170497-24170709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               4-208
               

               Cow position:
               chrX:28068079-28067870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               4-208
               

               Cow position:
               chrX:35285402-35285193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               4-208
               

               Cow position:
               chrX:40337139-40336931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               125, 168
               

               Conread position:
               4-209
               

               Cow position:
               chrX:19018600-19018812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               4-210
               

               Cow position:
               chrX:19356692-19356487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               120, 136
               

               Conread position:
               4-210
               

               Cow position:
               chrX:20345679-20345471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               124, 179
               

               Conread position:
               4-210
               

               Cow position:
               chrX:20583888-20583684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               123, 31
               

               Conread position:
               4-215
               

               Cow position:
               chrX:17293184-17292968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               124, 91
               

               Conread position:
               4-215
               

               Cow position:
               chrX:26979563-26979776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               99, 37
               

               Conread position:
               4-226
               

               Cow position:
               chrX:17524155-17524382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               122, 160
               

               Conread position:
               4-229
               

               Cow position:
               chrX:25049053-25049284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               4-232
               

               Cow position:
               chrX:39290583-39290355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               37, 69
               

               Conread position:
               4-233
               

               Cow position:
               chrX:27668734-27668963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               124, 47
               

               Conread position:
               4-240
               

               Cow position:
               chrX:3806907-3806671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               6, 69
               

               Conread position:
               4-240
               

               Cow position:
               chrX:16984863-16984633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               117, 68
               

               Conread position:
               4-242
               

               Cow position:
               chrX:26843038-26843283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               77, 237
               

               Conread position:
               4-244
               

               Cow position:
               chrX:35276214-35275969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               120, 200
               

               Conread position:
               4-260
               

               Cow position:
               chrX:41941851-41941594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               124, 61
               

               Conread position:
               4-262
               

               Cow position:
               chrX:4289662-4289405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               97, 68
               

               Conread position:
               4-262
               

               Cow position:
               chrX:44834426-44834686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               44, 121
               

               Conread position:
               4-263
               

               Cow position:
               chrX:17956917-17956660 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               124, 83
               

               Conread position:
               4-265
               

               Cow position:
               chrX:11325881-11326137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               216, 8
               

               Conread position:
               4-265
               

               Cow position:
               chrX:42894150-42893880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               120, 57
               

               Conread position:
               4-267
               

               Cow position:
               chrX:43150659-43150381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               124, 106
               

               Conread position:
               4-281
               

               Cow position:
               chrX:35986043-35985764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               197
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               67, 32
               

               Conread position:
               4-283
               

               Cow position:
               chrX:4109413-4109134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               124, 207
               

               Conread position:
               4-284
               

               Cow position:
               chrX:40108285-40108573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               69, 237
               

               Conread position:
               4-285
               

               Cow position:
               chrX:296620-296337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               124, 168
               

               Conread position:
               4-285
               

               Cow position:
               chrX:13147212-13146923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               200
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               27, 219
               

               Conread position:
               4-285
               

               Cow position:
               chrX:38321155-38321445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               124, 92
               

               Conread position:
               4-286
               

               Cow position:
               chrX:13122172-13121871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               4-286
               

               Cow position:
               chrX:25037220-25036928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               4-290
               

               Cow position:
               chrX:7648184-7648464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               39, 112
               

               Conread position:
               4-291
               

               Cow position:
               chrX:2674725-2675021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               196
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               29, 180
               

               Conread position:
               4-292
               

               Cow position:
               chrX:20957465-20957184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               205
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               124, 11
               

               Conread position:
               4-297
               

               Cow position:
               chrX:48004074-48003777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               117, 242
               

               Conread position:
               4-307
               

               Cow position:
               chrX:22115086-22115397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               221
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               37, 94
               

               Conread position:
               4-307
               

               Cow position:
               chrX:36866401-36866091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               4-309
               

               Cow position:
               chrX:4152816-4153117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               176, 68
               

               Conread position:
               4-313
               

               Cow position:
               chrX:35590530-35590843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               43, 49
               

               Conread position:
               4-328
               

               Cow position:
               chrX:45449140-45448799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               4-341
               

               Cow position:
               chrX:30337726-30338055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               90, 201
               

               Conread position:
               4-346
               

               Cow position:
               chrX:34315755-34315407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               235
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               47, 276
               

               Conread position:
               4-348
               

               Cow position:
               chrX:4403546-4403194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 237
               

               Conread position:
               4-349
               

               Cow position:
               chrX:18111607-18111269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               239
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               128, 218
               

               Conread position:
               4-349
               

               Cow position:
               chrX:38935507-38935164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               110, 184
               

               Conread position:
               4-349
               

               Cow position:
               chrX:40320636-40320284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               244
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               7, 246
               

               Conread position:
               4-353
               

               Cow position:
               chrX:33654615-33654972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               249
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               114, 228
               

               Conread position:
               4-353
               

               Cow position:
               chrX:48010833-48010473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               231
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               4-354
               

               Cow position:
               chrX:5872560-5872191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 245
               

               Conread position:
               4-354
               

               Cow position:
               chrX:43115377-43115025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               124, 68
               

               Conread position:
               4-359
               

               Cow position:
               chrX:9251935-9252306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               259
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               110, 74
               

               Conread position:
               4-359
               

               Cow position:
               chrX:20584540-20584192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               252
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               66, 83
               

               Conread position:
               4-359
               

               Cow position:
               chrX:24365594-24365958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 354
               

               Conread position:
               4-359
               

               Cow position:
               chrX:31729665-31729312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               247
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               120, 68
               

               Conread position:
               4-359
               

               Cow position:
               chrX:34504825-34505178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               124, 68
               

               Conread position:
               4-359
               

               Cow position:
               chrX:45110879-45110528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               124, 68
               

               Conread position:
               4-359
               

               Cow position:
               chrX:45977152-45976789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               247
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               111, 38
               

               Conread position:
               4-359
               

               Cow position:
               chrX:46072602-46072948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               83, 107
               

               Conread position:
               4-360
               

               Cow position:
               chrX:7695991-7695616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               255
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               88, 183
               

               Conread position:
               4-360
               

               Cow position:
               chrX:22813293-22812932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               253
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               66, 198
               

               Conread position:
               4-360
               

               Cow position:
               chrX:38853439-38853066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               73, 178
               

               Conread position:
               4-360
               

               Cow position:
               chrX:44961983-44961619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               39, 172
               

               Conread position:
               4-363
               

               Cow position:
               chrX:7351529-7351164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               257
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               73, 31
               

               Conread position:
               4-363
               

               Cow position:
               chrX:8869176-8869537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               250
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               110, 74
               

               Conread position:
               4-363
               

               Cow position:
               chrX:11614903-11614564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               248
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               114, 33
               

               Conread position:
               4-363
               

               Cow position:
               chrX:12979607-12979962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               124, 68
               

               Conread position:
               4-363
               

               Cow position:
               chrX:14883729-14884093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               124, 77
               

               Conread position:
               4-363
               

               Cow position:
               chrX:15546109-15545760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               124, 35
               

               Conread position:
               4-363
               

               Cow position:
               chrX:20339667-20340023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 34
               

               Conread position:
               4-363
               

               Cow position:
               chrX:22921549-22921181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               4-363
               

               Cow position:
               chrX:23563562-23563928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 245
               

               Conread position:
               4-363
               

               Cow position:
               chrX:27431696-27432049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               250
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               124, 31
               

               Conread position:
               4-363
               

               Cow position:
               chrX:34314249-34313898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               247
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               124, 68
               

               Conread position:
               4-363
               

               Cow position:
               chrX:34792095-34792442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               257
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               124, 31
               

               Conread position:
               4-363
               

               Cow position:
               chrX:38094298-38094658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 34
               

               Conread position:
               4-363
               

               Cow position:
               chrX:40035214-40035575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               124, 14
               

               Conread position:
               4-363
               

               Cow position:
               chrX:40183126-40183481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               123, 102
               

               Conread position:
               4-363
               

               Cow position:
               chrX:41027388-41027022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 319
               

               Conread position:
               4-363
               

               Cow position:
               chrX:47279708-47280067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               251
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               99, 107
               

               Conread position:
               4-363
               

               Cow position:
               chrX:47484030-47484403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               4-364
               

               Cow position:
               chrX:21663523-21663176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               248
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               128, 209
               

               Conread position:
               4-369
               

               Cow position:
               chrX:47657621-47657243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               252
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               60, 118
               

               Conread position:
               4-372
               

               Cow position:
               chrX:869954-870314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               250
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               110, 91
               

               Conread position:
               4-373
               

               Cow position:
               chrX:11844008-11844391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               259
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               28, 293
               

               Conread position:
               4-373
               

               Cow position:
               chrX:46588048-46587673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 60
               

               Conread position:
               4-374
               

               Cow position:
               chrX:27175228-27174850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 171
               

               Conread position:
               4-374
               

               Cow position:
               chrX:35822559-35822197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               253
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               124, 34
               

               Conread position:
               4-376
               

               Cow position:
               chrX:21642253-21642627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               254
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               115, 234
               

               Conread position:
               4-380
               

               Cow position:
               chrX:40826522-40826907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 244
               

               Conread position:
               4-381
               

               Cow position:
               chrX:36356332-36355958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               261
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               127, 68
               

               Conread position:
               4-384
               

               Cow position:
               chrX:34532739-34532368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               262
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               124, 30
               

               Conread position:
               4-387
               

               Cow position:
               chrX:6414260-6413881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               261
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               123, 31
               

               Conread position:
               4-387
               

               Cow position:
               chrX:12290946-12290572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               266
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               114, 68
               

               Conread position:
               4-388
               

               Cow position:
               chrX:5637951-5638330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               249
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               265, 71
               

               Conread position:
               4-390
               

               Cow position:
               chrX:13913303-13912914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               87, 68
               

               Conread position:
               4-390
               

               Cow position:
               chrX:25815671-25816062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               67, 247
               

               Conread position:
               4-390
               

               Cow position:
               chrX:40557430-40557842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               276
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               69, 338
               

               Conread position:
               4-390
               

               Cow position:
               chrX:44055031-44054635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 224
               

               Conread position:
               4-392
               

               Cow position:
               chrX:152133-151733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               269
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               67, 166
               

               Conread position:
               4-392
               

               Cow position:
               chrX:10865642-10866036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               274
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               83, 186
               

               Conread position:
               4-392
               

               Cow position:
               chrX:11633910-11633510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 91
               

               Conread position:
               4-392
               

               Cow position:
               chrX:11656306-11655920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 77
               

               Conread position:
               4-392
               

               Cow position:
               chrX:16762996-16762604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               270
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               123, 68
               

               Conread position:
               4-392
               

               Cow position:
               chrX:17231965-17231566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               267
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               106, 242
               

               Conread position:
               4-392
               

               Cow position:
               chrX:27393790-27394182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               278
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               66, 31
               

               Conread position:
               4-392
               

               Cow position:
               chrX:27446911-27446520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               271
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               123, 60
               

               Conread position:
               4-392
               

               Cow position:
               chrX:31948706-31949099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               263
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               114, 270
               

               Conread position:
               4-392
               

               Cow position:
               chrX:34377167-34376787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               124, 68
               

               Conread position:
               4-392
               

               Cow position:
               chrX:34441225-34441620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 201
               

               Conread position:
               4-392
               

               Cow position:
               chrX:34503154-34502750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 17
               

               Conread position:
               4-392
               

               Cow position:
               chrX:34565513-34565124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               263
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               78, 68
               

               Conread position:
               4-392
               

               Cow position:
               chrX:35885504-35885898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               276
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               120, 68
               

               Conread position:
               4-392
               

               Cow position:
               chrX:37489957-37489562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 240
               

               Conread position:
               4-392
               

               Cow position:
               chrX:38218941-38218539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               278
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               115, 86
               

               Conread position:
               4-392
               

               Cow position:
               chrX:38964325-38963938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 63
               

               Conread position:
               4-392
               

               Cow position:
               chrX:41123273-41122903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               252
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               80, 90
               

               Conread position:
               4-392
               

               Cow position:
               chrX:42246953-42247352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 310
               

               Conread position:
               4-392
               

               Cow position:
               chrX:42492293-42492683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 226
               

               Conread position:
               4-392
               

               Cow position:
               chrX:45429803-45430185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               252
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               81, 12
               

               Conread position:
               4-392
               

               Cow position:
               chrX:46032500-46032890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               124, 34
               

               Conread position:
               4-393
               

               Cow position:
               chrX:27705815-27705420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 48
               

               Conread position:
               4-393
               

               Cow position:
               chrX:30962647-30963041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 235
               

               Conread position:
               4-393
               

               Cow position:
               chrX:31250618-31250220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 330
               

               Conread position:
               4-393
               

               Cow position:
               chrX:42380884-42381269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               275
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               79, 31
               

               Conread position:
               4-400
               

               Cow position:
               chrX:5919715-5919325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               123, 32
               

               Conread position:
               4-411
               

               Cow position:
               chrX:30133096-30133517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               293
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               124, 35
               

               Conread position:
               5-117
               

               Cow position:
               chrX:876620-876731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               89
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               5-122
               

               Cow position:
               chrX:37717949-37717832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               93
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               5-126
               

               Cow position:
               chrX:42220474-42220595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               95
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               5-158
               

               Cow position:
               chrX:33678243-33678403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               5-266
               

               Cow position:
               chrX:35431014-35431282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               132, 109
               

               Conread position:
               5-278
               

               Cow position:
               chrX:36367707-36367994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               198
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               5-317
               

               Cow position:
               chrX:47588940-47588622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               127, 89
               

               Conread position:
               5-324
               

               Cow position:
               chrX:20168782-20168461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               228
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               124, 31
               

               Conread position:
               5-335
               

               Cow position:
               chrX:13924088-13923764 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               123, 71
               

               Conread position:
               5-360
               

               Cow position:
               chrX:48237044-48236684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               245
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               18, 84
               

               Conread position:
               5-366
               

               Cow position:
               chrX:36393114-36393485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               252
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               122, 152
               

               Conread position:
               5-374
               

               Cow position:
               chrX:26493234-26492861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 167
               

               Conread position:
               5-380
               

               Cow position:
               chrX:20887422-20887802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               270
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               101, 31
               

               Conread position:
               5-390
               

               Cow position:
               chrX:29542001-29542385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               271
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               182, 67
               

               Conread position:
               5-392
               

               Cow position:
               chrX:6488792-6488418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               264
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               53, 99
               

               Conread position:
               5-392
               

               Cow position:
               chrX:8925907-8925537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               265
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               262, 83
               

               Conread position:
               5-392
               

               Cow position:
               chrX:11938726-11939095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               260
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               183, 76
               

               Conread position:
               5-393
               

               Cow position:
               chrX:47186099-47186490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               87, 110
               

               Conread position:
               6-248
               

               Cow position:
               chrX:42836407-42836164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               122, 89
               

               Conread position:
               6-314
               

               Cow position:
               chrX:6559230-6559532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               218
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               135, 115
               

               Conread position:
               6-318
               

               Cow position:
               chrX:29050468-29050156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               121, 33
               

               Conread position:
               6-324
               

               Cow position:
               chrX:34836846-34837150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               121, 29
               

               Conread position:
               6-341
               

               Cow position:
               chrX:38654206-38654543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               79, 145
               

               Conread position:
               6-343
               

               Cow position:
               chrX:47873110-47873454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               219
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               105, 241
               

               Conread position:
               6-360
               

               Cow position:
               chrX:5118272-5118634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 89
               

               Conread position:
               6-363
               

               Cow position:
               chrX:8917621-8917261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               245
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               122, 230
               

               Conread position:
               6-369
               

               Cow position:
               chrX:41871283-41870932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               250
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               78, 52
               

               Conread position:
               6-391
               

               Cow position:
               chrX:6407770-6407381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 152
               

               Conread position:
               7-116
               

               Cow position:
               chrX:44995725-44995616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               87
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               7-183
               

               Cow position:
               chrX:13347494-13347318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               126, 120
               

               Conread position:
               7-219
               

               Cow position:
               chrX:4327957-4328174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               22, 104
               

               Conread position:
               7-233
               

               Cow position:
               chrX:4467176-4466962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               7-282
               

               Cow position:
               chrX:44339096-44339379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               65, 26
               

               Conread position:
               7-327
               

               Cow position:
               chrX:10516479-10516157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               231
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               121, 287
               

               Conread position:
               7-353
               

               Cow position:
               chrX:16541431-16541799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               240
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               125, 185
               

               Conread position:
               7-392
               

               Cow position:
               chrX:35269081-35268719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               270
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               51, 32
               

               Conread position:
               8-136
               

               Cow position:
               chrX:10479974-10479844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               8-219
               

               Cow position:
               chrX:1122323-1122534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               116, 21
               

               Conread position:
               8-243
               

               Cow position:
               chrX:27074827-27075065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               71, 88
               

               Conread position:
               8-245
               

               Cow position:
               chrX:42449789-42450033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               112, 164
               

               Conread position:
               8-265
               

               Cow position:
               chrX:24749311-24749050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               90, 160
               

               Conread position:
               8-273
               

               Cow position:
               chrX:1087924-1088190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               120, 64
               

               Conread position:
               8-274
               

               Cow position:
               chrX:22392764-22393033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               117, 64
               

               Conread position:
               8-304
               

               Cow position:
               chrX:47345554-47345257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               75, 88
               

               Conread position:
               8-306
               

               Cow position:
               chrX:39220312-39220001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               32, 234
               

               Conread position:
               8-342
               

               Cow position:
               chrX:42927606-42927933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               120, 41
               

               Conread position:
               8-345
               

               Cow position:
               chrX:26881338-26881685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               240
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               93, 43
               

               Conread position:
               8-359
               

               Cow position:
               chrX:41878713-41879063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               252
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               120, 31
               

               Conread position:
               8-360
               

               Cow position:
               chrX:1175766-1176111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               238
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               262, 58
               

               Conread position:
               8-360
               

               Cow position:
               chrX:45598384-45598732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               17, 22
               

               Conread position:
               8-363
               

               Cow position:
               chrX:616015-616397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               259
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               63, 340
               

               Conread position:
               8-363
               

               Cow position:
               chrX:21986077-21986427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               225, 73
               

               Conread position:
               8-363
               

               Cow position:
               chrX:33001122-33000772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               204, 116
               

               Conread position:
               8-363
               

               Cow position:
               chrX:44192218-44192584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               46, 347
               

               Conread position:
               8-387
               

               Cow position:
               chrX:32330395-32329994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               266
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               110, 168
               

               Conread position:
               8-389
               

               Cow position:
               chrX:44397235-44396856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               265
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               106, 164
               

               Conread position:
               8-390
               

               Cow position:
               chrX:6544469-6544090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               254
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               99, 110
               

               Conread position:
               8-390
               

               Cow position:
               chrX:17795203-17794819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               269
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               119, 13
               

               Conread position:
               8-390
               

               Cow position:
               chrX:27145823-27145457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               120, 64
               

               Conread position:
               8-392
               

               Cow position:
               chrX:7278130-7277751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               121, 31
               

               Conread position:
               8-392
               

               Cow position:
               chrX:15006935-15007319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               259
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               110, 74
               

               Conread position:
               8-393
               

               Cow position:
               chrX:1499878-1499501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               307, 81
               

               Conread position:
               8-393
               

               Cow position:
               chrX:9634968-9635350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               263
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               94, 30
               

               Conread position:
               9-345
               

               Cow position:
               chrX:44744599-44744934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               167, 161
               

               Conread position:
               9-363
               

               Cow position:
               chrX:37780889-37781249 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               248
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               105, 31
               

               Conread position:
               9-392
               

               Cow position:
               chrX:7646459-7646092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               226, 62
               

               Conread position:
               9-392
               

               Cow position:
               chrX:29601606-29602001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 79
               

               Conread position:
               10-318
               

               Cow position:
               chrX:1466385-1466070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               213
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               42, 81
               

               Conread position:
               10-392
               

               Cow position:
               chrX:15146977-15147356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               269
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               119, 28
               

               Conread position:
               10-393
               

               Cow position:
               chrX:842378-841989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               264
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               7, 27
               

               Conread position:
               11-392
               

               Cow position:
               chrX:31436690-31436314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 61
               

               Conread position:
               12-315
               

               Cow position:
               chrX:20881741-20882025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               81, 74
               

               Conread position:
               12-392
               

               Cow position:
               chrX:18694702-18695088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               268
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               62, 26
               

               Conread position:
               13-272
               

               Cow position:
               chrX:4645695-4645957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               105, 78
               

               Conread position:
               13-341
               

               Cow position:
               chrX:9650808-9651138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               228
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               115, 80
               

               Conread position:
               13-358
               

               Cow position:
               chrX:45875609-45875261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               236
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               105, 25
               

               Conread position:
               13-363
               

               Cow position:
               chrX:27515078-27514737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               113, 209
               

               Conread position:
               13-392
               

               Cow position:
               chrX:20152067-20151682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               274
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               115, 57
               

               Conread position:
               15-228
               

               Cow position:
               chrX:34420953-34420734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               15-294
               

               Cow position:
               chrX:27460085-27459789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               205
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               17, 244
               

               Conread position:
               15-390
               

               Cow position:
               chrX:13868921-13868527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               86, 75
               

               Conread position:
               15-392
               

               Cow position:
               chrX:32821257-32820860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 183
               

               Conread position:
               16-235
               

               Cow position:
               chrX:28837100-28836887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               140, 22
               

               Conread position:
               16-285
               

               Cow position:
               chrX:1360298-1360028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               112, 56
               

               Conread position:
               16-360
               

               Cow position:
               chrX:8731310-8730951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               249
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               102, 156
               

               Conread position:
               16-363
               

               Cow position:
               chrX:10831265-10831628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 313
               

               Conread position:
               16-398
               

               Cow position:
               chrX:27228345-27227953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 218
               

               Conread position:
               17-360
               

               Cow position:
               chrX:9361099-9360754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               28, 20
               

               Conread position:
               18-285
               

               Cow position:
               chrX:14275531-14275804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               185
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               8, 65
               

               Conread position:
               20-392
               

               Cow position:
               chrX:47344511-47344126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               256
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               60, 282
               

               Conread position:
               21-359
               

               Cow position:
               chrX:29544675-29545009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               244
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               107, 18
               

               Conread position:
               21-363
               

               Cow position:
               chrX:1615847-1616179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               198, 43
               

               Conread position:
               21-363
               

               Cow position:
               chrX:4278908-4279246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               27, 17
               

               Conread position:
               21-363
               

               Cow position:
               chrX:12309174-12309520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 214
               

               Conread position:
               21-363
               

               Cow position:
               chrX:34543997-34543651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 232
               

               Conread position:
               21-392
               

               Cow position:
               chrX:36976163-36975781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 182
               

               Conread position:
               21-393
               

               Cow position:
               chrX:4768939-4768581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               255
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               107, 54
               

               Conread position:
               21-394
               

               Cow position:
               chrX:34238934-34238550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               271
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               79, 279
               

               Conread position:
               22-363
               

               Cow position:
               chrX:35543094-35542760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               106, 76
               

               Conread position:
               22-392
               

               Cow position:
               chrX:32420421-32420050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               259
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               106, 73
               

               Conread position:
               23-346
               

               Cow position:
               chrX:5679721-5680053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               110, 256
               

               Conread position:
               23-355
               

               Cow position:
               chrX:34222923-34222586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               8, 71
               

               Conread position:
               23-360
               

               Cow position:
               chrX:22822264-22821919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               77, 219
               

               Conread position:
               23-363
               

               Cow position:
               chrX:31294360-31294693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               62, 207
               

               Conread position:
               24-353
               

               Cow position:
               chrX:47165676-47166011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               79, 199
               

               Conread position:
               24-392
               

               Cow position:
               chrX:28877958-28878327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               48, 219
               

               Conread position:
               24-392
               

               Cow position:
               chrX:46770754-46771138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               17, 13
               

               Conread position:
               27-339
               

               Cow position:
               chrX:4991819-4992127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               210
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               185, 105
               

               Conread position:
               27-352
               

               Cow position:
               chrX:27945848-27946183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               92, 229
               

               Conread position:
               27-360
               

               Cow position:
               chrX:8900224-8899896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               77, 93
               

               Conread position:
               27-389
               

               Cow position:
               chrX:23513802-23514180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               262
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               48, 173
               

               Conread position:
               27-393
               

               Cow position:
               chrX:21064487-21064117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               70, 214
               

               Conread position:
               28-360
               

               Cow position:
               chrX:14955564-14955897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               100, 181
               

               Conread position:
               32-324
               

               Cow position:
               chrX:40283323-40283029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               215
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               71, 141
               

               Conread position:
               34-334
               

               Cow position:
               chrX:169343-169646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               58, 155
               

               Conread position:
               34-404
               

               Cow position:
               chrX:13647586-13647965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               94, 179
               

               Conread position:
               38-349
               

               Cow position:
               chrX:24287739-24288045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               208
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               90, 55
               

               Conread position:
               38-374
               

               Cow position:
               chrX:34753980-34754333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               248
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               21, 218
               

               Conread position:
               39-230
               

               Cow position:
               chrX:39180040-39180235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               39-359
               

               Cow position:
               chrX:27302070-27301739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               89, 118
               

               Conread position:
               39-392
               

               Cow position:
               chrX:34662653-34663012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               81, 212
               

               Conread position:
               41-305
               

               Cow position:
               chrX:4515879-4515606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               195
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               73, 31
               

               Conread position:
               42-363
               

               Cow position:
               chrX:31252598-31252283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               230
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               75, 140
               

               Conread position:
               42-392
               

               Cow position:
               chrX:47046323-47046688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               72, 85
               

               Conread position:
               43-389
               

               Cow position:
               chrX:29680070-29680422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 14
               

               Conread position:
               49-363
               

               Cow position:
               chrX:16416686-16416375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               31, 96
               

               Conread position:
               51-310
               

               Cow position:
               chrX:16575294-16575040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               78, 177
               

               Conread position:
               51-392
               

               Cow position:
               chrX:4043675-4044019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               39, 139
               

               Conread position:
               54-322
               

               Cow position:
               chrX:23113461-23113181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               78, 39
               

               Conread position:
               54-363
               

               Cow position:
               chrX:6278315-6278637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               226
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               64-363
               

               Cow position:
               chrX:38006603-38006899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               197
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               64, 21
               

               Conread position:
               65-363
               

               Cow position:
               chrX:14599700-14599398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               223
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               63, 47
               

               Conread position:
               65-392
               

               Cow position:
               chrX:3488723-3489053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               62, 115
               

               Conread position:
               66-392
               

               Cow position:
               chrX:17888256-17888574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               5, 24
               

               Conread position:
               67-358
               

               Cow position:
               chrX:28134504-28134220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               60, 95
               

               Conread position:
               70-316
               

               Cow position:
               chrX:45883808-45884064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               58, 138
               

               Conread position:
               70-324
               

               Cow position:
               chrX:37129432-37129172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               57, 225
               

               Conread position:
               70-336
               

               Cow position:
               chrX:16348408-16348676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               22, 102
               

               Conread position:
               70-339
               

               Cow position:
               chrX:29194389-29194123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               193
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               56, 19
               

               Conread position:
               70-347
               

               Cow position:
               chrX:23562796-23562516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               10, 181
               

               Conread position:
               70-359
               

               Cow position:
               chrX:9365513-9365806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               58, 186
               

               Conread position:
               70-373
               

               Cow position:
               chrX:11084900-11085202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               28, 163
               

               Conread position:
               70-392
               

               Cow position:
               chrX:11717620-11717951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               48, 242
               

               Conread position:
               70-392
               

               Cow position:
               chrX:23785811-23785485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               22, 159
               

               Conread position:
               70-392
               

               Cow position:
               chrX:42235364-42235702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               59, 18
               

               Conread position:
               70-392
               

               Cow position:
               chrX:43730061-43730383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               222
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               59, 127
               

               Conread position:
               71-375
               

               Cow position:
               chrX:878216-878524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               17, 225
               

               Conread position:
               71-391
               

               Cow position:
               chrX:8797411-8797080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               235
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               57, 103
               

               Conread position:
               71-392
               

               Cow position:
               chrX:9416522-9416861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               233
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               57, 138
               

               Conread position:
               71-392
               

               Cow position:
               chrX:27771806-27772129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               57, 86
               

               Conread position:
               71-392
               

               Cow position:
               chrX:33640137-33639803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               47, 142
               

               Conread position:
               74-308
               

               Cow position:
               chrX:4746087-4746322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               64, 135
               

               Conread position:
               76-370
               

               Cow position:
               chrX:45113777-45113478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               49, 20
               

               Conread position:
               77-355
               

               Cow position:
               chrX:7710380-7710670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               9, 168
               

               Conread position:
               77-363
               

               Cow position:
               chrX:618852-619139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               15, 55
               

               Conread position:
               77-369
               

               Cow position:
               chrX:38728890-38728594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               220
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               51, 139
               

               Conread position:
               77-392
               

               Cow position:
               chrX:37836734-37836419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               79, 94
               

               Conread position:
               77-392
               

               Cow position:
               chrX:40809849-40809518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               79-393
               

               Cow position:
               chrX:46433644-46433313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               49, 17
               

               Conread position:
               81-363
               

               Cow position:
               chrX:31312181-31311894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               47, 195
               

               Conread position:
               82-346
               

               Cow position:
               chrX:5679421-5679684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               36, 90
               

               Conread position:
               82-392
               

               Cow position:
               chrX:11073038-11073357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               19, 222
               

               Conread position:
               83-363
               

               Cow position:
               chrX:29289728-29289445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               46, 155
               

               Conread position:
               90-359
               

               Cow position:
               chrX:36778541-36778280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               44, 71
               

               Conread position:
               100-317
               

               Cow position:
               chrX:31515307-31515079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               101-363
               

               Cow position:
               chrX:37232539-37232278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               27, 116
               

               Conread position:
               101-393
               

               Cow position:
               chrX:29121179-29120887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               28, 72
               

               Conread position:
               102-363
               

               Cow position:
               chrX:38226979-38227230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               27, 65
               

               Conread position:
               103-363
               

               Cow position:
               chrX:19690345-19690086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               26, 129
               

               Conread position:
               136-363
               

               Cow position:
               chrX:27685341-27685112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               136-393
               

               Cow position:
               chrX:26440693-26440949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               134, 36
               

               Conread position:
               137-349
               

               Cow position:
               chrX:45403734-45403951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               66, 103
               

               Conread position:
               137-363
               

               Cow position:
               chrX:2467975-2467748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               80, 126
               

               Conread position:
               137-363
               

               Cow position:
               chrX:42171203-42171431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               99, 188
               

               Conread position:
               137-363
               

               Cow position:
               chrX:46722643-46722872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               91, 112
               

               Conread position:
               137-380
               

               Cow position:
               chrX:22454007-22454245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               80, 33
               

               Conread position:
               137-388
               

               Cow position:
               chrX:21004775-21004517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               48, 52
               

               Conread position:
               137-390
               

               Cow position:
               chrX:43527599-43527337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               130, 96
               

               Conread position:
               137-392
               

               Cow position:
               chrX:7571996-7571738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               177
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               103, 180
               

               Conread position:
               137-392
               

               Cow position:
               chrX:11082531-11082782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               99, 132
               

               Conread position:
               137-392
               

               Cow position:
               chrX:11856521-11856260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               92, 141
               

               Conread position:
               137-392
               

               Cow position:
               chrX:27680489-27680233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               193
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               86, 149
               

               Conread position:
               137-392
               

               Cow position:
               chrX:34402091-34401829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               95, 180
               

               Conread position:
               137-392
               

               Cow position:
               chrX:42469850-42470105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               43, 69
               

               Conread position:
               140-340
               

               Cow position:
               chrX:44873473-44873673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               80, 28
               

               Conread position:
               140-363
               

               Cow position:
               chrX:12405293-12405522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               141-360
               

               Cow position:
               chrX:40480785-40481001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               128, 34
               

               Conread position:
               146-392
               

               Cow position:
               chrX:17662516-17662765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               123, 22
               

               Conread position:
               146-392
               

               Cow position:
               chrX:44656875-44657133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               81, 62
               

               Conread position:
               150-392
               

               Cow position:
               chrX:24105702-24105458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               175
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               88, 99
               

               Conread position:
               153-374
               

               Cow position:
               chrX:11589513-11589733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               114, 76
               

               Conread position:
               156-392
               

               Cow position:
               chrX:37541190-37540956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               163
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               112, 55
               

               Conread position:
               161-352
               

               Cow position:
               chrX:48044446-48044636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               14, 72
               

               Conread position:
               164-391
               

               Cow position:
               chrX:13785296-13785525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               72, 160
               

               Conread position:
               170-335
               

               Cow position:
               chrX:35848623-35848454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               16, 117
               

               Conread position:
               173-349
               

               Cow position:
               chrX:9155316-9155133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               173-392
               

               Cow position:
               chrX:26875826-26876051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               67, 150
               

               Conread position:
               174-324
               

               Cow position:
               chrX:29549491-29549644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               174-345
               

               Cow position:
               chrX:12018346-12018171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               58, 72
               

               Conread position:
               174-360
               

               Cow position:
               chrX:8070645-8070830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               93, 64
               

               Conread position:
               174-363
               

               Cow position:
               chrX:9855352-9855169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               58, 94
               

               Conread position:
               174-365
               

               Cow position:
               chrX:40692697-40692889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               137
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               52, 132
               

               Conread position:
               174-375
               

               Cow position:
               chrX:28845887-28845690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               56, 164
               

               Conread position:
               174-389
               

               Cow position:
               chrX:41991991-41992207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               12, 57
               

               Conread position:
               174-391
               

               Cow position:
               chrX:6234395-6234616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               174-394
               

               Cow position:
               chrX:41166908-41167135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               175-364
               

               Cow position:
               chrX:36961692-36961503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               94, 10
               

               Conread position:
               176-392
               

               Cow position:
               chrX:40648038-40647809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               167
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               91, 139
               

               Conread position:
               179-360
               

               Cow position:
               chrX:13382380-13382197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               44, 56
               

               Conread position:
               179-360
               

               Cow position:
               chrX:35681391-35681206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               40, 26
               

               Conread position:
               179-373
               

               Cow position:
               chrX:27416107-27415922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               179-380
               

               Cow position:
               chrX:5017362-5017564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               55, 139
               

               Conread position:
               179-389
               

               Cow position:
               chrX:15139498-15139710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               91, 54
               

               Conread position:
               179-392
               

               Cow position:
               chrX:19015486-19015274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               65, 88
               

               Conread position:
               179-392
               

               Cow position:
               chrX:34270451-34270238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               54, 187
               

               Conread position:
               181-392
               

               Cow position:
               chrX:32127946-32128149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               133, 7
               

               Conread position:
               181-392
               

               Cow position:
               chrX:42994660-42994446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               88, 112
               

               Conread position:
               183-373
               

               Cow position:
               chrX:11673872-11673685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               47, 5
               

               Conread position:
               183-393
               

               Cow position:
               chrX:27442512-27442725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               87, 46
               

               Conread position:
               184-360
               

               Cow position:
               chrX:4091684-4091513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               86, 42
               

               Conread position:
               184-392
               

               Cow position:
               chrX:14925044-14924831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               83, 53
               

               Conread position:
               187-391
               

               Cow position:
               chrX:47379426-47379634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               43, 186
               

               Conread position:
               187-392
               

               Cow position:
               chrX:29509397-29509612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               188-363
               

               Cow position:
               chrX:40567638-40567468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               126, 48
               

               Conread position:
               190-363
               

               Cow position:
               chrX:12116085-12115904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               190-390
               

               Cow position:
               chrX:17498123-17497930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               38, 67
               

               Conread position:
               190-392
               

               Cow position:
               chrX:23970417-23970220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               46, 82
               

               Conread position:
               190-392
               

               Cow position:
               chrX:41743952-41743744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               190-393
               

               Cow position:
               chrX:10411948-10412158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               39, 44
               

               Conread position:
               191-363
               

               Cow position:
               chrX:9954176-9954010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               48, 77
               

               Conread position:
               191-366
               

               Cow position:
               chrX:31986826-31987005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               76, 21
               

               Conread position:
               191-392
               

               Cow position:
               chrX:9997297-9997502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               41, 47
               

               Conread position:
               195-363
               

               Cow position:
               chrX:38439514-38439343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               39, 123
               

               Conread position:
               195-390
               

               Cow position:
               chrX:17908255-17908450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               40, 35
               

               Conread position:
               195-392
               

               Cow position:
               chrX:14973708-14973901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               72, 38
               

               Conread position:
               202-379
               

               Cow position:
               chrX:35969060-35969238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               31, 36
               

               Conread position:
               204-388
               

               Cow position:
               chrX:42461720-42461910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               63, 110
               

               Conread position:
               204-390
               

               Cow position:
               chrX:23497643-23497831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               39, 112
               

               Conread position:
               204-392
               

               Cow position:
               chrX:20752278-20752091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               66, 33
               

               Conread position:
               205-368
               

               Cow position:
               chrX:44053283-44053118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               14, 118
               

               Conread position:
               205-391
               

               Cow position:
               chrX:40116440-40116254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               28, 52
               

               Conread position:
               205-392
               

               Cow position:
               chrX:17630780-17630971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               21, 98
               

               Conread position:
               213-392
               

               Cow position:
               chrX:1514397-1514569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               222-368
               

               Cow position:
               chrX:1503340-1503198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               222-390
               

               Cow position:
               chrX:1505715-1505545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               93, 46
               

               Conread position:
               223-392
               

               Cow position:
               chrX:22465947-22465787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               44, 79
               

               Conread position:
               227-360
               

               Cow position:
               chrX:48385357-48385492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               42, 10
               

               Conread position:
               227-392
               

               Cow position:
               chrX:30832848-30833014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               120, 42
               

               Conread position:
               227-393
               

               Cow position:
               chrX:3653760-3653594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               40, 69
               

               Conread position:
               229-392
               

               Cow position:
               chrX:21665595-21665762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               128
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               40, 27
               

               Conread position:
               230-341
               

               Cow position:
               chrX:32747682-32747570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               113
               

               Alignm identity:
               92
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               230-392
               

               Cow position:
               chrX:25238168-25238008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               132, 21
               

               Conread position:
               230-393
               

               Cow position:
               chrX:14003642-14003814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               13, 86
               

               Conread position:
               230-395
               

               Cow position:
               chrX:35284618-35284452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               234-360
               

               Cow position:
               chrX:36723096-36723223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               102
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               234-360
               

               Cow position:
               chrX:37048583-37048708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               35, 86
               

               Conread position:
               234-363
               

               Cow position:
               chrX:21566398-21566267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               103
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               234-363
               

               Cow position:
               chrX:43049343-43049213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               99
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               237-388
               

               Cow position:
               chrX:7336819-7336664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               32, 16
               

               Conread position:
               237-392
               

               Cow position:
               chrX:19188929-19188768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               240-392
               

               Cow position:
               chrX:31256854-31256699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               29, 73
               

               Conread position:
               243-363
               

               Cow position:
               chrX:46315392-46315512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               95
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               27, 80
               

               Conread position:
               243-392
               

               Cow position:
               chrX:48684239-48684391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               248-386
               

               Cow position:
               chrX:25411821-25411683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               21, 64
               

               Conread position:
               265-392
               

               Cow position:
               chrX:41271245-41271376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               104
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               106, 0
               
Show alignments to all cow chromosomes.
Conread position:	1-115
Cow position:	chrX:18196231-18196116 (view UCSC Genome Browser custom track)
Alignm length:	116
Alignm identity:	91
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	25, 0
Conread position:	1-122
Cow position:	chrX:1938244-1938125 (view UCSC Genome Browser custom track)
Alignm length:	122
Alignm identity:	95
Alignm E-value:	9e-22
Alignm gaps (pig, cow):	90, 0
Conread position:	1-158
Cow position:	chrX:16801036-16801193 (view UCSC Genome Browser custom track)
Alignm length:	160
Alignm identity:	119
Alignm E-value:	4e-25
Alignm gaps (pig, cow):	123, 37
Conread position:	1-160
Cow position:	chrX:41011121-41010966 (view UCSC Genome Browser custom track)
Alignm length:	165
Alignm identity:	125
Alignm E-value:	9e-22
Alignm gaps (pig, cow):	127, 37
Conread position:	1-167
Cow position:	chrX:597247-597413 (view UCSC Genome Browser custom track)
Alignm length:	169
Alignm identity:	123
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	127, 141
Conread position:	1-183
Cow position:	chrX:35409983-35409797 (view UCSC Genome Browser custom track)
Alignm length:	187
Alignm identity:	135
Alignm E-value:	2e-27
Alignm gaps (pig, cow):	127, 0
Conread position:	1-198
Cow position:	chrX:4092153-4091954 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	143
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	127, 34
Conread position:	1-203
Cow position:	chrX:44040408-44040206 (view UCSC Genome Browser custom track)
Alignm length:	208
Alignm identity:	149
Alignm E-value:	5e-27
Alignm gaps (pig, cow):	123, 171
Conread position:	1-243
Cow position:	chrX:42480058-42479817 (view UCSC Genome Browser custom track)
Alignm length:	250
Alignm identity:	170
Alignm E-value:	3e-22
Alignm gaps (pig, cow):	34, 39
Conread position:	1-282
Cow position:	chrX:5134705-5134420 (view UCSC Genome Browser custom track)
Alignm length:	291
Alignm identity:	191
Alignm E-value:	9e-22
Alignm gaps (pig, cow):	64, 154
Conread position:	1-285
Cow position:	chrX:5063467-5063195 (view UCSC Genome Browser custom track)
Alignm length:	285
Alignm identity:	187
Alignm E-value:	4e-24
Alignm gaps (pig, cow):	29, 0
Conread position:	1-309
Cow position:	chrX:22284070-22283750 (view UCSC Genome Browser custom track)
Alignm length:	327
Alignm identity:	226
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	116, 158
Conread position:	1-315
Cow position:	chrX:40680846-40680523 (view UCSC Genome Browser custom track)
Alignm length:	324
Alignm identity:	232
Alignm E-value:	0
Alignm gaps (pig, cow):	123, 0
Conread position:	1-316
Cow position:	chrX:31489752-31489431 (view UCSC Genome Browser custom track)
Alignm length:	325
Alignm identity:	224
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	126, 173
Conread position:	1-322
Cow position:	chrX:27261421-27261093 (view UCSC Genome Browser custom track)
Alignm length:	332
Alignm identity:	232
Alignm E-value:	2.94273e-44
Alignm gaps (pig, cow):	127, 32
Conread position:	1-325
Cow position:	chrX:12095540-12095871 (view UCSC Genome Browser custom track)
Alignm length:	334
Alignm identity:	241
Alignm E-value:	0
Alignm gaps (pig, cow):	120, 244
Conread position:	1-330
Cow position:	chrX:21328145-21327801 (view UCSC Genome Browser custom track)
Alignm length:	345
Alignm identity:	234
Alignm E-value:	6e-39
Alignm gaps (pig, cow):	131, 0
Conread position:	1-339
Cow position:	chrX:17949261-17949601 (view UCSC Genome Browser custom track)
Alignm length:	350
Alignm identity:	242
Alignm E-value:	6e-39
Alignm gaps (pig, cow):	127, 95
Conread position:	1-347
Cow position:	chrX:4512476-4512115 (view UCSC Genome Browser custom track)
Alignm length:	363
Alignm identity:	240
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	129, 111
Conread position:	1-360
Cow position:	chrX:9201774-9201418 (view UCSC Genome Browser custom track)
Alignm length:	367
Alignm identity:	244
Alignm E-value:	1e-35
Alignm gaps (pig, cow):	37, 72