Cow genome map
| Conread name: | Lym2-sn01_E07.f |
| Conread position: | 1-351 |
| Cow position: | chr11:36713150-36713536 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 51, 185 |
| Conread position: | 1-582 |
| Cow position: | chr11:18073070-18073679 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 117 |
| Conread position: | 1-647 |
| Cow position: | chr11:36762420-36761762 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 218 |
| Conread position: | 80-437 |
| Cow position: | chr11:13066809-13067164 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 36, 130 |
| Conread position: | 82-672 |
| Cow position: | chr11:30187530-30186937 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 128 |
| Conread position: | 83-660 |
| Cow position: | chr11:13163198-13162643 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 127 |
| Conread position: | 154-672 |
| Cow position: | chr11:44231276-44230765 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 206-672 |
| Cow position: | chr11:21467199-21466714 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 324 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 17, 57 |
| Conread position: | 270-664 |
| Cow position: | chr11:85393753-85394159 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 271-626 |
| Cow position: | chr11:19102428-19102798 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-642 |
| Cow position: | chr11:23877361-23876978 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr11:10847500-10847096 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 271-664 |
| Cow position: | chr11:41170635-41171041 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 271-672 |
| Cow position: | chr11:12358366-12358784 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 291 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 271-672 |
| Cow position: | chr11:38835373-38835779 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-672 |
| Cow position: | chr11:75920457-75920052 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 71 |
| Conread position: | 294-553 |
| Cow position: | chr11:12093594-12093328 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 297-672 |
| Cow position: | chr11:26124904-26125295 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 300-490 |
| Cow position: | chr11:30205278-30205089 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 302-672 |
| Cow position: | chr11:8887134-8887515 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 307-672 |
| Cow position: | chr11:8283100-8282714 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 309-582 |
| Cow position: | chr11:48085129-48084855 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 49 |
| Conread position: | 339-582 |
| Cow position: | chr11:12351077-12351323 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 351-583 |
| Cow position: | chr11:53287478-53287714 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 6, 28 |
| Conread position: | 352-583 |
| Cow position: | chr11:1496097-1496332 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 5, 220 |
| Conread position: | 352-583 |
| Cow position: | chr11:3492988-3492752 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr11:15983601-15983365 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr11:19064272-19064508 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr11:37477142-37477378 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr11:38505628-38505863 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 5, 148 |
| Conread position: | 352-583 |
| Cow position: | chr11:57628069-57628305 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr11:67846594-67846830 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-626 |
| Cow position: | chr11:17107709-17107997 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-639 |
| Cow position: | chr11:52419365-52419063 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 353-582 |
| Cow position: | chr11:8519964-8519735 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 40 |
| Conread position: | 353-582 |
| Cow position: | chr11:37065143-37065379 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 168 |
| Conread position: | 356-576 |
| Cow position: | chr11:45111341-45111109 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 356-582 |
| Cow position: | chr11:9606606-9606835 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 71 |
| Conread position: | 356-583 |
| Cow position: | chr11:20920773-20921004 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr11:36744208-36744439 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 356-583 |
| Cow position: | chr11:61401079-61401310 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr11:64045970-64045739 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr11:73477280-73477049 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-672 |
| Cow position: | chr11:25527530-25527210 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 160 |
| Conread position: | 359-609 |
| Cow position: | chr11:43514661-43514921 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 116 |
| Conread position: | 359-642 |
| Cow position: | chr11:17220246-17220549 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 283 |
| Conread position: | 359-664 |
| Cow position: | chr11:29668662-29668977 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 359-664 |
| Cow position: | chr11:71329613-71329295 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 43, 283 |
| Conread position: | 359-671 |
| Cow position: | chr11:8244673-8244345 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 359-672 |
| Cow position: | chr11:24393286-24392963 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 36, 278 |
| Conread position: | 359-672 |
| Cow position: | chr11:72109996-72110323 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 43, 232 |
| Conread position: | 360-583 |
| Cow position: | chr11:5343249-5343476 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 42, 158 |
| Conread position: | 365-670 |
| Cow position: | chr11:8261741-8262060 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 94, 259 |
| Conread position: | 366-647 |
| Cow position: | chr11:28063638-28063353 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 38, 124 |
| Conread position: | 369-670 |
| Cow position: | chr11:7113553-7113235 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 104 |
| Conread position: | 372-641 |
| Cow position: | chr11:37093106-37093388 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 87, 263 |
| Conread position: | 379-546 |
| Cow position: | chr11:77235664-77235493 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 139 |
| Conread position: | 379-626 |
| Cow position: | chr11:77728571-77728839 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 379-672 |
| Cow position: | chr11:28229804-28230111 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 140 |
| Conread position: | 401-660 |
| Cow position: | chr11:13067105-13067361 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 182, 13 |
| Conread position: | 401-671 |
| Cow position: | chr11:43732330-43732049 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 107, 53 |
| Conread position: | 406-672 |
| Cow position: | chr11:9415509-9415768 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 44, 94 |
| Conread position: | 409-583 |
| Cow position: | chr11:9734730-9734906 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 107 |
| Conread position: | 409-601 |
| Cow position: | chr11:17280380-17280577 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 415-595 |
| Cow position: | chr11:40776630-40776819 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 426-639 |
| Cow position: | chr11:4270970-4271196 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 33, 215 |
| Conread position: | 445-672 |
| Cow position: | chr11:32685163-32684926 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 64, 70 |
Show alignments to all cow chromosomes.