Cow genome map
| Conread name: | Lym2-sn01_E07.f |
| Conread position: | 3-672 |
| Cow position: | chr14:43553702-43553000 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 3-672 |
| Cow position: | chr14:48405402-48406105 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 85-672 |
| Cow position: | chr14:30706491-30707088 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 51 |
| Conread position: | 125-562 |
| Cow position: | chr14:35929335-35928884 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 297 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 41, 119 |
| Conread position: | 139-671 |
| Cow position: | chr14:47654896-47654326 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 388 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 139-672 |
| Cow position: | chr14:38816081-38816620 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 61 |
| Conread position: | 146-367 |
| Cow position: | chr14:33236128-33235905 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 151-672 |
| Cow position: | chr14:37413747-37414309 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 373 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 240-582 |
| Cow position: | chr14:32533729-32534061 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 94 |
| Conread position: | 262-563 |
| Cow position: | chr14:45161106-45160801 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 57 |
| Conread position: | 271-575 |
| Cow position: | chr14:50110567-50110257 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 83, 40 |
| Conread position: | 271-626 |
| Cow position: | chr14:15276580-15276949 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-641 |
| Cow position: | chr14:7472367-7471992 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 271-664 |
| Cow position: | chr14:5529062-5528655 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 271-664 |
| Cow position: | chr14:16273296-16273702 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr14:37223901-37223496 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 290-581 |
| Cow position: | chr14:45834127-45833835 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 112, 28 |
| Conread position: | 291-672 |
| Cow position: | chr14:43033918-43034304 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 111, 28 |
| Conread position: | 297-582 |
| Cow position: | chr14:7830570-7830856 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 105, 44 |
| Conread position: | 297-672 |
| Cow position: | chr14:16919721-16920109 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 301-639 |
| Cow position: | chr14:45029155-45029498 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 302-582 |
| Cow position: | chr14:42152289-42152007 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 23 |
| Conread position: | 302-626 |
| Cow position: | chr14:22242849-22242515 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 304-582 |
| Cow position: | chr14:5201115-5201397 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 24, 63 |
| Conread position: | 307-660 |
| Cow position: | chr14:41084821-41085191 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 309-662 |
| Cow position: | chr14:33235926-33235582 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 311-582 |
| Cow position: | chr14:44130866-44130599 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 91, 19 |
| Conread position: | 320-576 |
| Cow position: | chr14:38146529-38146274 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 178 |
| Conread position: | 320-639 |
| Cow position: | chr14:41407770-41407439 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 320-671 |
| Cow position: | chr14:22019343-22018979 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 105 |
| Conread position: | 331-664 |
| Cow position: | chr14:17001119-17001461 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 36, 112 |
| Conread position: | 333-672 |
| Cow position: | chr14:47589808-47589454 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 141 |
| Conread position: | 339-564 |
| Cow position: | chr14:44287320-44287548 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 352-561 |
| Cow position: | chr14:40339600-40339389 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 352-563 |
| Cow position: | chr14:44551804-44551585 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 352-582 |
| Cow position: | chr14:45851140-45850908 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 49, 209 |
| Conread position: | 352-583 |
| Cow position: | chr14:750489-750253 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-583 |
| Cow position: | chr14:2284258-2284022 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 5, 117 |
| Conread position: | 352-583 |
| Cow position: | chr14:9045485-9045249 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 5, 123 |
| Conread position: | 352-583 |
| Cow position: | chr14:17491537-17491773 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 5, 117 |
| Conread position: | 352-583 |
| Cow position: | chr14:23257278-23257042 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr14:29047984-29048219 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 5, 196 |
| Conread position: | 352-583 |
| Cow position: | chr14:33393857-33394093 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-583 |
| Cow position: | chr14:45672126-45672361 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 110 |
| Conread position: | 352-626 |
| Cow position: | chr14:30585033-30585314 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 5, 31 |
| Conread position: | 353-574 |
| Cow position: | chr14:45770862-45771085 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 353-582 |
| Cow position: | chr14:45712074-45712302 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 353-626 |
| Cow position: | chr14:45303446-45303734 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 169 |
| Conread position: | 353-660 |
| Cow position: | chr14:45767919-45767598 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 49, 261 |
| Conread position: | 353-672 |
| Cow position: | chr14:44422471-44422135 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 356-583 |
| Cow position: | chr14:23900886-23901117 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-667 |
| Cow position: | chr14:19620134-19619810 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 46, 144 |
| Conread position: | 358-672 |
| Cow position: | chr14:36968171-36967834 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 359-598 |
| Cow position: | chr14:5511733-5511485 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 43, 181 |
| Conread position: | 359-609 |
| Cow position: | chr14:20782367-20782108 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 359-664 |
| Cow position: | chr14:11154255-11154573 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 44, 233 |
| Conread position: | 359-664 |
| Cow position: | chr14:17685307-17684989 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 359-664 |
| Cow position: | chr14:19328357-19328675 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 359-664 |
| Cow position: | chr14:28993943-28994261 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 283 |
| Conread position: | 359-667 |
| Cow position: | chr14:13778866-13778557 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 43, 210 |
| Conread position: | 359-667 |
| Cow position: | chr14:30596473-30596796 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 360-626 |
| Cow position: | chr14:13864172-13864453 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 365-642 |
| Cow position: | chr14:45917323-45917030 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 366-568 |
| Cow position: | chr14:46464976-46464771 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 370-662 |
| Cow position: | chr14:42123299-42123600 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 267 |
| Conread position: | 372-664 |
| Cow position: | chr14:22031789-22032092 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 188 |
| Conread position: | 379-582 |
| Cow position: | chr14:38532401-38532609 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 379-670 |
| Cow position: | chr14:13479843-13480146 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 23, 239 |
| Conread position: | 380-537 |
| Cow position: | chr14:9516276-9516429 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 70 |
| Conread position: | 389-672 |
| Cow position: | chr14:14309198-14309492 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 401-574 |
| Cow position: | chr14:23260058-23260229 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 401-581 |
| Cow position: | chr14:48824451-48824268 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 402-582 |
| Cow position: | chr14:13660125-13660304 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 72, 56 |
Show alignments to all cow chromosomes.