Cow genome map

Conread name: Lym2-sn01_E07.f

Conread position: 3-672
Cow position: chr14:43553702-43553000 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 3-672
Cow position: chr14:48405402-48406105 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 15

Conread position: 85-672
Cow position: chr14:30706491-30707088 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 51

Conread position: 125-562
Cow position: chr14:35929335-35928884 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 297
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 41, 119

Conread position: 139-671
Cow position: chr14:47654896-47654326 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 388
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 34, 12

Conread position: 139-672
Cow position: chr14:38816081-38816620 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 61

Conread position: 146-367
Cow position: chr14:33236128-33235905 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 46

Conread position: 151-672
Cow position: chr14:37413747-37414309 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 373
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 31, 13

Conread position: 240-582
Cow position: chr14:32533729-32534061 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 94

Conread position: 262-563
Cow position: chr14:45161106-45160801 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 206
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 43, 57

Conread position: 271-575
Cow position: chr14:50110567-50110257 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 83, 40

Conread position: 271-626
Cow position: chr14:15276580-15276949 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 245
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 34, 80

Conread position: 271-641
Cow position: chr14:7472367-7471992 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 258
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 34, 20

Conread position: 271-664
Cow position: chr14:5529062-5528655 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 263
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 69, 0

Conread position: 271-664
Cow position: chr14:16273296-16273702 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 264
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 34, 49

Conread position: 271-664
Cow position: chr14:37223901-37223496 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 270
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 34, 49

Conread position: 290-581
Cow position: chr14:45834127-45833835 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 112, 28

Conread position: 291-672
Cow position: chr14:43033918-43034304 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 274
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 111, 28

Conread position: 297-582
Cow position: chr14:7830570-7830856 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 196
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 105, 44

Conread position: 297-672
Cow position: chr14:16919721-16920109 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 258
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 36, 56

Conread position: 301-639
Cow position: chr14:45029155-45029498 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 227
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 13

Conread position: 302-582
Cow position: chr14:42152289-42152007 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 184
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 99, 23

Conread position: 302-626
Cow position: chr14:22242849-22242515 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 222
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 18

Conread position: 304-582
Cow position: chr14:5201115-5201397 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 189
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 24, 63

Conread position: 307-660
Cow position: chr14:41084821-41085191 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 253
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 94, 34

Conread position: 309-662
Cow position: chr14:33235926-33235582 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 241
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 59, 19

Conread position: 311-582
Cow position: chr14:44130866-44130599 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 187
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 91, 19

Conread position: 320-576
Cow position: chr14:38146529-38146274 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 180
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 178

Conread position: 320-639
Cow position: chr14:41407770-41407439 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 35, 70

Conread position: 320-671
Cow position: chr14:22019343-22018979 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 248
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 29, 105

Conread position: 331-664
Cow position: chr14:17001119-17001461 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 234
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 36, 112

Conread position: 333-672
Cow position: chr14:47589808-47589454 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 239
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 141

Conread position: 339-564
Cow position: chr14:44287320-44287548 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 152
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 18

Conread position: 352-561
Cow position: chr14:40339600-40339389 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 43, 18

Conread position: 352-563
Cow position: chr14:44551804-44551585 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 352-582
Cow position: chr14:45851140-45850908 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 49, 209

Conread position: 352-583
Cow position: chr14:750489-750253 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 5, 167

Conread position: 352-583
Cow position: chr14:2284258-2284022 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 5, 117

Conread position: 352-583
Cow position: chr14:9045485-9045249 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 5, 123

Conread position: 352-583
Cow position: chr14:17491537-17491773 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 5, 117

Conread position: 352-583
Cow position: chr14:23257278-23257042 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 352-583
Cow position: chr14:29047984-29048219 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 5, 196

Conread position: 352-583
Cow position: chr14:33393857-33394093 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 5, 167

Conread position: 352-583
Cow position: chr14:45672126-45672361 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 110

Conread position: 352-626
Cow position: chr14:30585033-30585314 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 5, 31

Conread position: 353-574
Cow position: chr14:45770862-45771085 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 353-582
Cow position: chr14:45712074-45712302 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 29

Conread position: 353-626
Cow position: chr14:45303446-45303734 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 169

Conread position: 353-660
Cow position: chr14:45767919-45767598 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 218
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 49, 261

Conread position: 353-672
Cow position: chr14:44422471-44422135 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 227
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 356-583
Cow position: chr14:23900886-23901117 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 46, 162

Conread position: 356-667
Cow position: chr14:19620134-19619810 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 223
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 46, 144

Conread position: 358-672
Cow position: chr14:36968171-36967834 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 229
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 12, 0

Conread position: 359-598
Cow position: chr14:5511733-5511485 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 43, 181

Conread position: 359-609
Cow position: chr14:20782367-20782108 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 43, 0

Conread position: 359-664
Cow position: chr14:11154255-11154573 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 223
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 44, 233

Conread position: 359-664
Cow position: chr14:17685307-17684989 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 218
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 43, 13

Conread position: 359-664
Cow position: chr14:19328357-19328675 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 211
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 359-664
Cow position: chr14:28993943-28994261 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 283

Conread position: 359-667
Cow position: chr14:13778866-13778557 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 215
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 43, 210

Conread position: 359-667
Cow position: chr14:30596473-30596796 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 217
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 0

Conread position: 360-626
Cow position: chr14:13864172-13864453 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 189
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 365-642
Cow position: chr14:45917323-45917030 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 191
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 366-568
Cow position: chr14:46464976-46464771 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 36, 65

Conread position: 370-662
Cow position: chr14:42123299-42123600 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 267

Conread position: 372-664
Cow position: chr14:22031789-22032092 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 206
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 188

Conread position: 379-582
Cow position: chr14:38532401-38532609 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 141
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 379-670
Cow position: chr14:13479843-13480146 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 23, 239

Conread position: 380-537
Cow position: chr14:9516276-9516429 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 70

Conread position: 389-672
Cow position: chr14:14309198-14309492 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 18, 42

Conread position: 401-574
Cow position: chr14:23260058-23260229 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 54

Conread position: 401-581
Cow position: chr14:48824451-48824268 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 402-582
Cow position: chr14:13660125-13660304 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 72, 56

Show alignments to all cow chromosomes.