Cow genome map

Conread name: Lym2-sn01_E07.f

Conread position: 1-544
Cow position: chr15:498659-498111 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 47

Conread position: 1-563
Cow position: chr15:686825-686232 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 377
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 63, 38

Conread position: 3-438
Cow position: chr15:7787798-7788269 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 318
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 50, 185

Conread position: 81-671
Cow position: chr15:11625126-11624499 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 91

Conread position: 85-614
Cow position: chr15:30810810-30810283 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 126

Conread position: 112-667
Cow position: chr15:2007722-2007127 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 391
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 22, 6

Conread position: 139-396
Cow position: chr15:1254595-1254320 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 206
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 122, 24

Conread position: 139-662
Cow position: chr15:11298655-11299209 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 56

Conread position: 140-672
Cow position: chr15:17218723-17219289 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 357
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 32, 57

Conread position: 147-671
Cow position: chr15:20357176-20357689 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 116

Conread position: 271-626
Cow position: chr15:32494386-32494754 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 247
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 34, 49

Conread position: 271-640
Cow position: chr15:35753596-35753979 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 252
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 42, 85

Conread position: 271-664
Cow position: chr15:4922151-4921739 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 273
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 34, 49

Conread position: 271-664
Cow position: chr15:6155952-6156359 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 269
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 34, 49

Conread position: 271-664
Cow position: chr15:21665745-21666151 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 271
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 34, 48

Conread position: 271-664
Cow position: chr15:24295095-24294686 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 267
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 34, 92

Conread position: 271-664
Cow position: chr15:31358887-31358498 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 259
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 34, 80

Conread position: 271-664
Cow position: chr15:42936715-42936309 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 264
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 29, 80

Conread position: 271-667
Cow position: chr15:8099489-8099074 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 278
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 35, 49

Conread position: 271-672
Cow position: chr15:6553855-6554273 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 277
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 100, 40

Conread position: 273-664
Cow position: chr15:12421167-12421571 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 266
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 80, 38

Conread position: 282-582
Cow position: chr15:6078729-6078426 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 205
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 7, 30

Conread position: 283-582
Cow position: chr15:4961611-4961316 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 203
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 119, 22

Conread position: 293-660
Cow position: chr15:23156867-23157235 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 255
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 109, 48

Conread position: 297-580
Cow position: chr15:10787157-10787441 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 191
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 105, 44

Conread position: 297-582
Cow position: chr15:4733830-4733545 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 197
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 105, 44

Conread position: 297-589
Cow position: chr15:44069894-44069601 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 197
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 105, 49

Conread position: 297-672
Cow position: chr15:7522522-7522907 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 259
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 110, 44

Conread position: 297-672
Cow position: chr15:18576684-18576301 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 261
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 105, 29

Conread position: 298-647
Cow position: chr15:18022796-18023171 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 270
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 12, 45

Conread position: 299-672
Cow position: chr15:21961477-21961088 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 258
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 103, 42

Conread position: 301-549
Cow position: chr15:56457-56206 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 169
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 54, 13

Conread position: 302-583
Cow position: chr15:1834492-1834775 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 185
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 12

Conread position: 305-582
Cow position: chr15:35648270-35648545 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 190
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 9

Conread position: 307-574
Cow position: chr15:17271436-17271703 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 95, 21

Conread position: 307-582
Cow position: chr15:32672850-32672574 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 63, 17

Conread position: 308-598
Cow position: chr15:25789009-25789304 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 209
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 94, 33

Conread position: 318-597
Cow position: chr15:36642570-36642279 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 0

Conread position: 320-523
Cow position: chr15:12453366-12453161 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 50, 11

Conread position: 320-563
Cow position: chr15:36626715-36626966 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 168
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 320-639
Cow position: chr15:40105417-40105085 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 220
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 20, 323

Conread position: 320-672
Cow position: chr15:8408510-8408139 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 246
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 203

Conread position: 320-672
Cow position: chr15:17787212-17787577 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 41

Conread position: 320-672
Cow position: chr15:24716174-24715811 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 246
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 30, 73

Conread position: 321-672
Cow position: chr15:15265706-15266065 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 243
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 187

Conread position: 335-659
Cow position: chr15:6622272-6621944 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 235
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 67, 32

Conread position: 340-598
Cow position: chr15:7544812-7544544 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 180
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 62, 26

Conread position: 352-579
Cow position: chr15:2012002-2011772 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 5, 188

Conread position: 352-583
Cow position: chr15:444529-444294 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 5, 86

Conread position: 352-583
Cow position: chr15:1519229-1519464 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 5, 168

Conread position: 352-583
Cow position: chr15:2647735-2647971 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 5, 167

Conread position: 352-583
Cow position: chr15:18268066-18268302 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 161
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 5, 0

Conread position: 352-583
Cow position: chr15:20749336-20749100 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 5, 167

Conread position: 352-583
Cow position: chr15:28490220-28490456 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 352-642
Cow position: chr15:1782175-1781870 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 204
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 5, 117

Conread position: 352-672
Cow position: chr15:42320500-42320836 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 220
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 5, 167

Conread position: 353-582
Cow position: chr15:6369861-6370092 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 49, 124

Conread position: 353-672
Cow position: chr15:53338942-53338620 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 50, 107

Conread position: 355-664
Cow position: chr15:4682149-4681825 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 212
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 289

Conread position: 356-582
Cow position: chr15:3037596-3037828 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 356-582
Cow position: chr15:6593029-6593257 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 46, 161

Conread position: 356-582
Cow position: chr15:7894316-7894544 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 356-583
Cow position: chr15:4142902-4143132 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 46, 161

Conread position: 356-583
Cow position: chr15:17080286-17080516 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 47, 143

Conread position: 356-583
Cow position: chr15:50124026-50124254 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 46, 109

Conread position: 356-583
Cow position: chr15:50146994-50146763 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 356-626
Cow position: chr15:8750341-8750059 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 190
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 356-626
Cow position: chr15:36648823-36648544 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 183
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 260

Conread position: 356-639
Cow position: chr15:3009935-3010232 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 200
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 356-662
Cow position: chr15:35748209-35747890 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 226
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 46, 258

Conread position: 356-672
Cow position: chr15:4649742-4649418 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 46, 253

Conread position: 356-672
Cow position: chr15:7234218-7233893 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 219
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 45, 145

Conread position: 359-583
Cow position: chr15:4196376-4196148 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 159

Conread position: 359-583
Cow position: chr15:36970837-36970609 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 43, 109

Conread position: 359-662
Cow position: chr15:19738141-19738456 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 215
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 282

Conread position: 359-664
Cow position: chr15:2076560-2076242 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 43, 283

Conread position: 359-664
Cow position: chr15:15347207-15347525 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 214
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 43, 283

Conread position: 359-664
Cow position: chr15:17039345-17039657 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 215
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 86, 101

Conread position: 359-664
Cow position: chr15:42491116-42490800 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 214
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 43, 159

Conread position: 359-672
Cow position: chr15:690702-690373 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 219
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 42, 174

Conread position: 359-672
Cow position: chr15:4385180-4384856 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 212
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 43, 0

Conread position: 359-672
Cow position: chr15:7837156-7836825 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 222
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 0

Conread position: 360-583
Cow position: chr15:1772410-1772184 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 42, 160

Conread position: 366-563
Cow position: chr15:17292343-17292143 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 59

Conread position: 366-576
Cow position: chr15:4671334-4671120 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 366-582
Cow position: chr15:4678382-4678163 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 151

Conread position: 370-582
Cow position: chr15:4795578-4795366 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 147
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 106

Conread position: 372-672
Cow position: chr15:16542566-16542249 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 210
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 78, 43

Conread position: 379-672
Cow position: chr15:24793939-24793631 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 205
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 25, 168

Conread position: 402-609
Cow position: chr15:38979787-38979572 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 48, 24

Conread position: 409-598
Cow position: chr15:35735317-35735119 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 50, 0

Conread position: 417-583
Cow position: chr15:22920979-22920810 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 119
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 43, 0

Conread position: 427-665
Cow position: chr15:7788527-7788777 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 69

Conread position: 453-672
Cow position: chr15:1254113-1253889 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 7, 17

Show alignments to all cow chromosomes.