Cow genome map

Conread name: Lym2-sn01_E07.f

Conread position: 9-672
Cow position: chr16:28437853-28438550 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 211

Conread position: 80-299
Cow position: chr16:25170793-25170571 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 42

Conread position: 142-672
Cow position: chr16:24154676-24155207 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 53

Conread position: 237-525
Cow position: chr16:48626942-48626629 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 216
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 114

Conread position: 262-672
Cow position: chr16:49256917-49257350 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 281
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 92, 48

Conread position: 271-598
Cow position: chr16:10203779-10204114 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 227
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 5, 57

Conread position: 271-645
Cow position: chr16:25457811-25458206 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 260
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 34, 80

Conread position: 271-664
Cow position: chr16:5483973-5483570 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 269
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 34, 49

Conread position: 271-664
Cow position: chr16:12538272-12538676 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 265
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 34, 79

Conread position: 271-664
Cow position: chr16:23252852-23253257 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 265
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 34, 50

Conread position: 271-664
Cow position: chr16:23982964-23982559 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 273
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 34, 84

Conread position: 271-664
Cow position: chr16:25341619-25341216 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 267
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 69, 48

Conread position: 271-664
Cow position: chr16:25441278-25440865 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 271
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 80

Conread position: 271-672
Cow position: chr16:2483486-2483905 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 266
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 83, 375

Conread position: 271-672
Cow position: chr16:10437895-10437476 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 280
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 93, 29

Conread position: 272-664
Cow position: chr16:407379-407787 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 270
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 33, 48

Conread position: 290-672
Cow position: chr16:14666198-14666596 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 271
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 13, 37

Conread position: 297-654
Cow position: chr16:2411345-2411712 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 242
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 36, 45

Conread position: 297-672
Cow position: chr16:40296555-40296941 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 251
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 104, 29

Conread position: 304-672
Cow position: chr16:836651-836263 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 256
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 11

Conread position: 307-591
Cow position: chr16:19713275-19713555 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 34

Conread position: 307-649
Cow position: chr16:41560271-41559919 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 240
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 43, 63

Conread position: 308-664
Cow position: chr16:26663361-26662996 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 243
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 94, 25

Conread position: 311-606
Cow position: chr16:41757833-41758139 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 9

Conread position: 320-657
Cow position: chr16:335893-335545 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 238
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 11, 27

Conread position: 320-657
Cow position: chr16:9930147-9929794 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 234
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 108

Conread position: 320-660
Cow position: chr16:42739816-42740173 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 244
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 12, 41

Conread position: 321-557
Cow position: chr16:52814884-52815124 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 28, 40

Conread position: 321-582
Cow position: chr16:13018703-13018438 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 49, 37

Conread position: 337-671
Cow position: chr16:25085209-25084856 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 232
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 7, 237

Conread position: 352-583
Cow position: chr16:32311-32077 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 5, 146

Conread position: 352-620
Cow position: chr16:28170790-28171069 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 190
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 5, 166

Conread position: 352-664
Cow position: chr16:15566316-15565997 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 217
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 50, 137

Conread position: 352-672
Cow position: chr16:5661423-5661094 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 5, 117

Conread position: 352-672
Cow position: chr16:25294402-25294076 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 198

Conread position: 352-672
Cow position: chr16:51686012-51685675 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 76

Conread position: 353-580
Cow position: chr16:39821201-39820972 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 49, 124

Conread position: 355-672
Cow position: chr16:31592338-31592671 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 230
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 67

Conread position: 356-582
Cow position: chr16:20254743-20254973 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 356-583
Cow position: chr16:25188210-25187980 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 46, 131

Conread position: 356-583
Cow position: chr16:53045922-53045690 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 46, 162

Conread position: 359-578
Cow position: chr16:43897706-43897925 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 43, 63

Conread position: 359-664
Cow position: chr16:1567889-1568207 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 218
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 43, 233

Conread position: 359-664
Cow position: chr16:8816539-8816857 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 227
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 43, 233

Conread position: 359-664
Cow position: chr16:29046587-29046269 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 213
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 43, 283

Conread position: 359-672
Cow position: chr16:15492274-15491942 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 219
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 284

Conread position: 366-598
Cow position: chr16:11052718-11052478 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 94

Conread position: 369-563
Cow position: chr16:25156668-25156865 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 126

Conread position: 370-639
Cow position: chr16:5919037-5918757 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 189
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 32, 148

Conread position: 370-657
Cow position: chr16:33611523-33611830 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 32, 151

Conread position: 372-639
Cow position: chr16:9777637-9777357 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 189
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 263

Conread position: 373-664
Cow position: chr16:27734251-27734556 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 29, 270

Conread position: 384-671
Cow position: chr16:25167203-25166917 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 148

Conread position: 401-670
Cow position: chr16:16030306-16030023 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 194
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 55, 237

Show alignments to all cow chromosomes.