Cow genome map
| Conread name: | Lym2-sn01_E07.f |
| Conread position: | 17-583 |
| Cow position: | chr17:3708703-3709288 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 375 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 80-458 |
| Cow position: | chr17:15384302-15383934 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 44, 130 |
| Conread position: | 141-580 |
| Cow position: | chr17:2147546-2147092 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 300 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 142-672 |
| Cow position: | chr17:152123-152665 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 362 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 81, 22 |
| Conread position: | 271-598 |
| Cow position: | chr17:18103454-18103786 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr17:3642605-3643011 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr17:25737894-25737488 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 57, 82 |
| Conread position: | 271-671 |
| Cow position: | chr17:15850629-15850212 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 83, 29 |
| Conread position: | 271-672 |
| Cow position: | chr17:13856539-13856958 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 40 |
| Conread position: | 297-582 |
| Cow position: | chr17:23856832-23857118 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 297-620 |
| Cow position: | chr17:40805018-40804688 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 302-583 |
| Cow position: | chr17:15156765-15157048 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 302-672 |
| Cow position: | chr17:228108-228491 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 307-670 |
| Cow position: | chr17:27345989-27345618 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 95, 21 |
| Conread position: | 307-672 |
| Cow position: | chr17:1947160-1946789 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 95, 21 |
| Conread position: | 314-583 |
| Cow position: | chr17:2262291-2262023 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 327-672 |
| Cow position: | chr17:13929841-13929479 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 331-583 |
| Cow position: | chr17:2174048-2173794 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 70, 26 |
| Conread position: | 334-670 |
| Cow position: | chr17:16890288-16889936 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 68, 7 |
| Conread position: | 339-565 |
| Cow position: | chr17:1283543-1283772 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 352-582 |
| Cow position: | chr17:23324303-23324538 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr17:181514-181278 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr17:8209257-8209021 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr17:9653305-9653541 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-583 |
| Cow position: | chr17:14216875-14217109 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 24 |
| Conread position: | 352-583 |
| Cow position: | chr17:15435942-15435706 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr17:43988684-43988452 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 177 |
| Conread position: | 353-582 |
| Cow position: | chr17:18026608-18026841 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 353-660 |
| Cow position: | chr17:35592363-35592038 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 353-672 |
| Cow position: | chr17:2287535-2287197 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 355-563 |
| Cow position: | chr17:15143220-15143432 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 355-563 |
| Cow position: | chr17:44852786-44852997 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 99, 85 |
| Conread position: | 356-582 |
| Cow position: | chr17:18185389-18185617 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 108 |
| Conread position: | 356-583 |
| Cow position: | chr17:2248438-2248668 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 203 |
| Conread position: | 356-583 |
| Cow position: | chr17:6089015-6089246 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr17:24634100-24633869 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-671 |
| Cow position: | chr17:4060245-4059915 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 359-579 |
| Cow position: | chr17:20665583-20665807 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 359-598 |
| Cow position: | chr17:2579758-2579519 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 83 |
| Conread position: | 359-662 |
| Cow position: | chr17:11087581-11087897 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 283 |
| Conread position: | 359-663 |
| Cow position: | chr17:19269223-19269540 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 277 |
| Conread position: | 360-583 |
| Cow position: | chr17:1382672-1382899 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 42, 158 |
| Conread position: | 360-672 |
| Cow position: | chr17:2588447-2588127 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 382-583 |
| Cow position: | chr17:2556242-2556038 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 117 |
| Conread position: | 393-579 |
| Cow position: | chr17:26205698-26205888 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 447-583 |
| Cow position: | chr17:24781098-24780963 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 493-672 |
| Cow position: | chr17:15381985-15381802 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 86, 53 |
Show alignments to all cow chromosomes.