Cow genome map
| Conread name: | Lym2-sn01_E07.f |
| Conread position: | 126-366 |
| Cow position: | chr18:26844834-26845080 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 139-662 |
| Cow position: | chr18:46868610-46869144 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 154-672 |
| Cow position: | chr18:9186239-9186748 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 159-672 |
| Cow position: | chr18:46877447-46877976 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 231-642 |
| Cow position: | chr18:14416447-14416030 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 259-598 |
| Cow position: | chr18:23943931-23944273 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 143, 35 |
| Conread position: | 271-662 |
| Cow position: | chr18:33269265-33268858 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 271-664 |
| Cow position: | chr18:36508772-36508366 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-664 |
| Cow position: | chr18:41840385-41840792 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-671 |
| Cow position: | chr18:52651357-52650951 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 83, 47 |
| Conread position: | 271-672 |
| Cow position: | chr18:28973463-28973884 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-672 |
| Cow position: | chr18:40478822-40478406 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 278 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 278-598 |
| Cow position: | chr18:33336291-33335969 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 296-672 |
| Cow position: | chr18:44601924-44601557 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 297-558 |
| Cow position: | chr18:17992011-17992273 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 44 |
| Conread position: | 297-670 |
| Cow position: | chr18:16534387-16534000 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 105, 34 |
| Conread position: | 297-672 |
| Cow position: | chr18:53786247-53785856 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 155, 44 |
| Conread position: | 307-582 |
| Cow position: | chr18:29237216-29236934 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 7 |
| Conread position: | 308-661 |
| Cow position: | chr18:5980837-5980470 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 320-672 |
| Cow position: | chr18:37599149-37599510 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 288 |
| Conread position: | 326-582 |
| Cow position: | chr18:47719201-47719460 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 76, 31 |
| Conread position: | 334-672 |
| Cow position: | chr18:14130758-14130408 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 352-568 |
| Cow position: | chr18:51462720-51462940 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr18:11274747-11274983 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 5, 117 |
| Conread position: | 352-583 |
| Cow position: | chr18:24040373-24040610 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr18:47742377-47742141 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr18:55088565-55088802 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-626 |
| Cow position: | chr18:51342045-51341756 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-639 |
| Cow position: | chr18:19352741-19352442 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 24 |
| Conread position: | 352-672 |
| Cow position: | chr18:33359224-33358886 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 5, 166 |
| Conread position: | 353-582 |
| Cow position: | chr18:39748934-39748702 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 99, 87 |
| Conread position: | 353-670 |
| Cow position: | chr18:2019330-2019665 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 356-582 |
| Cow position: | chr18:48222232-48222003 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 46, 86 |
| Conread position: | 356-583 |
| Cow position: | chr18:16079071-16078840 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 356-583 |
| Cow position: | chr18:22602841-22602610 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr18:33953221-33953446 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 88 |
| Conread position: | 356-670 |
| Cow position: | chr18:6868905-6869236 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 356-672 |
| Cow position: | chr18:51689978-51689645 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 359-589 |
| Cow position: | chr18:51481190-51480956 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 359-642 |
| Cow position: | chr18:27837966-27838261 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 359-664 |
| Cow position: | chr18:23797998-23797680 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 43, 283 |
| Conread position: | 359-670 |
| Cow position: | chr18:43146575-43146905 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 359-672 |
| Cow position: | chr18:37505414-37505082 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 48, 74 |
| Conread position: | 360-582 |
| Cow position: | chr18:51310933-51310709 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 99, 41 |
| Conread position: | 365-598 |
| Cow position: | chr18:35335824-35335581 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 369-626 |
| Cow position: | chr18:16843000-16843266 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 93, 29 |
| Conread position: | 369-664 |
| Cow position: | chr18:2886681-2886988 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 33, 122 |
| Conread position: | 370-582 |
| Cow position: | chr18:29048226-29048440 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 146 |
| Conread position: | 370-582 |
| Cow position: | chr18:54171524-54171736 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 376-672 |
| Cow position: | chr18:16393313-16393622 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 143 |
| Conread position: | 411-587 |
| Cow position: | chr18:27987358-27987181 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 172 |
| Conread position: | 424-663 |
| Cow position: | chr18:32652504-32652254 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 216 |
| Conread position: | 447-667 |
| Cow position: | chr18:25350923-25350694 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 12 |
| Conread position: | 461-672 |
| Cow position: | chr18:43201299-43201076 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 121, 0 |
Show alignments to all cow chromosomes.