Cow genome map

Conread name: Lym2-sn01_E07.f

Conread position: 1-548
Cow position: chr2:63978095-63977520 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 36

Conread position: 1-662
Cow position: chr2:77208837-77208131 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 15

Conread position: 1-672
Cow position: chr2:11692351-11691660 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 164

Conread position: 3-664
Cow position: chr2:20920654-20921313 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 449
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 45, 120

Conread position: 80-664
Cow position: chr2:36991969-36991364 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 25

Conread position: 139-672
Cow position: chr2:20874144-20874696 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 53

Conread position: 140-672
Cow position: chr2:34474885-34475424 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 54

Conread position: 147-672
Cow position: chr2:45921260-45921781 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 8

Conread position: 158-639
Cow position: chr2:45968363-45968847 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 36

Conread position: 179-455
Cow position: chr2:52173118-52173417 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 210
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 72, 10

Conread position: 179-672
Cow position: chr2:43959589-43959076 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 10

Conread position: 190-647
Cow position: chr2:15580030-15580488 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 34

Conread position: 220-671
Cow position: chr2:50403212-50402740 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 191

Conread position: 264-582
Cow position: chr2:4926284-4926606 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 211
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 41, 18

Conread position: 270-672
Cow position: chr2:39622170-39621759 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 274
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 53, 62

Conread position: 271-660
Cow position: chr2:13045820-13046205 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 262
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 34, 80

Conread position: 271-664
Cow position: chr2:10186347-10186754 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 270
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 80

Conread position: 271-664
Cow position: chr2:10268774-10269181 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 266
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 34, 80

Conread position: 271-664
Cow position: chr2:24922278-24921878 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 269
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 131, 29

Conread position: 271-664
Cow position: chr2:50983343-50983749 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 272
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 34, 80

Conread position: 271-664
Cow position: chr2:52062553-52062146 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 267
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 34, 49

Conread position: 271-670
Cow position: chr2:6960634-6960213 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 274
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 99, 40

Conread position: 271-671
Cow position: chr2:65938566-65938981 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 276
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 34, 11

Conread position: 272-568
Cow position: chr2:63292685-63292982 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 198
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 130, 67

Conread position: 278-582
Cow position: chr2:11968895-11969200 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 198
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 124, 22

Conread position: 282-664
Cow position: chr2:44935212-44935605 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 262
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 72, 18

Conread position: 285-664
Cow position: chr2:47810877-47810490 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 264
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 110, 30

Conread position: 289-672
Cow position: chr2:50322160-50321746 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 273
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 20, 158

Conread position: 290-672
Cow position: chr2:3749779-3749372 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 278
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 112, 25

Conread position: 292-514
Cow position: chr2:11727833-11727612 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 13, 122

Conread position: 297-580
Cow position: chr2:26869123-26868842 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 191
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 105, 44

Conread position: 297-582
Cow position: chr2:44106253-44106539 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 105, 44

Conread position: 297-664
Cow position: chr2:28793107-28792726 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 257
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 36, 45

Conread position: 297-664
Cow position: chr2:53329608-53329228 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 255
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 36, 50

Conread position: 301-583
Cow position: chr2:41686369-41686085 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 191
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 56, 13

Conread position: 302-670
Cow position: chr2:41172531-41172155 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 252
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 55, 12

Conread position: 302-672
Cow position: chr2:52152010-52152387 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 247
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 12, 41

Conread position: 304-670
Cow position: chr2:10843501-10843871 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 257
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 19, 25

Conread position: 306-626
Cow position: chr2:32655189-32654856 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 225
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 48, 271

Conread position: 306-672
Cow position: chr2:44346561-44346181 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 257
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 96, 22

Conread position: 307-542
Cow position: chr2:46465281-46465525 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 16, 68

Conread position: 308-582
Cow position: chr2:2364029-2363754 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 183
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 94, 33

Conread position: 308-598
Cow position: chr2:72921987-72922283 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 85, 20

Conread position: 308-672
Cow position: chr2:50077441-50077066 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 249
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 25, 32

Conread position: 315-672
Cow position: chr2:72108704-72109061 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 43

Conread position: 318-582
Cow position: chr2:28620991-28621256 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 180
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 20, 42

Conread position: 318-660
Cow position: chr2:7902121-7901763 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 237
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 13, 147

Conread position: 320-563
Cow position: chr2:36053812-36054063 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 165
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 320-568
Cow position: chr2:36030899-36031149 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 29

Conread position: 320-648
Cow position: chr2:1672832-1673170 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 231
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 7

Conread position: 320-672
Cow position: chr2:7211536-7211170 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 241
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 29, 49

Conread position: 320-672
Cow position: chr2:28747296-28746932 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 253
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 39, 19

Conread position: 321-649
Cow position: chr2:16289061-16288729 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 228
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 11, 26

Conread position: 352-563
Cow position: chr2:57335001-57334786 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 5, 35

Conread position: 352-568
Cow position: chr2:2088368-2088589 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 5, 0

Conread position: 352-583
Cow position: chr2:9907718-9907482 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 5, 167

Conread position: 352-583
Cow position: chr2:10611821-10612057 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 5, 0

Conread position: 352-583
Cow position: chr2:39421384-39421147 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 5, 0

Conread position: 352-583
Cow position: chr2:41656887-41656652 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 5, 73

Conread position: 352-583
Cow position: chr2:47038609-47038843 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 5, 115

Conread position: 352-583
Cow position: chr2:51990725-51990961 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 5, 167

Conread position: 352-583
Cow position: chr2:67419494-67419730 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 5, 0

Conread position: 352-626
Cow position: chr2:25030671-25030959 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 5, 150

Conread position: 352-626
Cow position: chr2:44091106-44090816 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 194
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 5, 0

Conread position: 352-672
Cow position: chr2:59413875-59414214 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 226
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 353-579
Cow position: chr2:6772369-6772598 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 48, 78

Conread position: 353-625
Cow position: chr2:5905060-5905344 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 190
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 49, 109

Conread position: 353-627
Cow position: chr2:5480864-5481146 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 191
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 109

Conread position: 353-671
Cow position: chr2:2101667-2102001 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 87

Conread position: 353-672
Cow position: chr2:11159322-11159661 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 229
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 14, 178

Conread position: 353-672
Cow position: chr2:82167412-82167074 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 229
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 87

Conread position: 355-598
Cow position: chr2:78762271-78762021 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 70

Conread position: 356-575
Cow position: chr2:175728-175951 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 152
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 356-575
Cow position: chr2:5474316-5474093 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 46, 162

Conread position: 356-582
Cow position: chr2:53473361-53473587 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 104

Conread position: 356-583
Cow position: chr2:2184456-2184687 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 356-583
Cow position: chr2:2412996-2413227 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 158

Conread position: 356-583
Cow position: chr2:49472047-49471816 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 162

Conread position: 356-583
Cow position: chr2:52616272-52616042 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 111

Conread position: 356-583
Cow position: chr2:57141886-57142117 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 162

Conread position: 356-583
Cow position: chr2:80955836-80956067 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 46, 162

Conread position: 356-660
Cow position: chr2:10711636-10711952 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 214
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 45, 0

Conread position: 356-670
Cow position: chr2:46946467-46946135 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 220
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 71

Conread position: 359-574
Cow position: chr2:16076499-16076718 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 359-577
Cow position: chr2:2380904-2380686 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 81

Conread position: 359-583
Cow position: chr2:3324767-3324995 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 43, 159

Conread position: 359-589
Cow position: chr2:42671591-42671824 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 156
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 140

Conread position: 359-598
Cow position: chr2:45213488-45213741 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 43, 235

Conread position: 359-625
Cow position: chr2:26921493-26921214 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 187
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 43, 187

Conread position: 359-664
Cow position: chr2:28650434-28650747 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 207
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 140

Conread position: 363-582
Cow position: chr2:14560973-14560756 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 148
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 39, 85

Conread position: 366-583
Cow position: chr2:4404558-4404778 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 101

Conread position: 366-583
Cow position: chr2:78741923-78741699 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 372-582
Cow position: chr2:14822285-14822071 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 32, 146

Conread position: 376-664
Cow position: chr2:282912-283213 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 203
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 26, 269

Conread position: 376-672
Cow position: chr2:290053-290365 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 28, 65

Conread position: 379-568
Cow position: chr2:34565153-34565345 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 388-647
Cow position: chr2:35353135-35352866 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 189
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 14, 252

Conread position: 406-671
Cow position: chr2:4235906-4235643 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 182
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 55, 16

Conread position: 411-647
Cow position: chr2:52656210-52655967 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 29, 148

Conread position: 426-670
Cow position: chr2:85356042-85356302 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 454-672
Cow position: chr2:52173628-52173852 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 128, 89

Conread position: 460-657
Cow position: chr2:20875947-20876144 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 124, 74

Conread position: 470-672
Cow position: chr2:29029784-29029573 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 114, 168

Show alignments to all cow chromosomes.