Cow genome map
| Conread name: | Lym2-sn01_E07.f |
| Conread position: | 3-522 |
| Cow position: | chr21:21517953-21517389 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 378 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 169 |
| Conread position: | 128-582 |
| Cow position: | chr21:23601839-23601398 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 68 |
| Conread position: | 139-671 |
| Cow position: | chr21:21926065-21926600 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 139-672 |
| Cow position: | chr21:6698923-6699467 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 154-458 |
| Cow position: | chr21:25974878-25974586 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 178-496 |
| Cow position: | chr21:26095297-26094963 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 16 |
| Conread position: | 270-528 |
| Cow position: | chr21:3615833-3615570 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 271-582 |
| Cow position: | chr21:35144276-35143972 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-609 |
| Cow position: | chr21:1191682-1191334 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 271-625 |
| Cow position: | chr21:40271161-40271526 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr21:2883229-2883635 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 264 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 271-664 |
| Cow position: | chr21:3779286-3778879 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-672 |
| Cow position: | chr21:7267012-7267444 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 40, 151 |
| Conread position: | 271-672 |
| Cow position: | chr21:10567188-10566772 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 276 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 273-664 |
| Cow position: | chr21:31559142-31559540 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 289-570 |
| Cow position: | chr21:36825186-36824910 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 297-523 |
| Cow position: | chr21:34258499-34258727 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 105, 44 |
| Conread position: | 298-585 |
| Cow position: | chr21:25799573-25799296 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 302-660 |
| Cow position: | chr21:4077325-4076950 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 306-581 |
| Cow position: | chr21:13123525-13123799 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 94, 35 |
| Conread position: | 306-672 |
| Cow position: | chr21:3194866-3194493 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 308-660 |
| Cow position: | chr21:34293494-34293128 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 94, 33 |
| Conread position: | 312-670 |
| Cow position: | chr21:4457302-4456928 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 314-502 |
| Cow position: | chr21:18693422-18693230 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 320-671 |
| Cow position: | chr21:21914759-21914385 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 101 |
| Conread position: | 321-589 |
| Cow position: | chr21:23812347-23812072 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 328-582 |
| Cow position: | chr21:4183980-4183729 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 145 |
| Conread position: | 339-627 |
| Cow position: | chr21:4589541-4589842 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 7 |
| Conread position: | 352-583 |
| Cow position: | chr21:12055562-12055798 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-583 |
| Cow position: | chr21:26638026-26638262 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-647 |
| Cow position: | chr21:39425502-39425194 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 5, 299 |
| Conread position: | 352-664 |
| Cow position: | chr21:6340005-6339679 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 353-664 |
| Cow position: | chr21:146361-146036 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 290 |
| Conread position: | 356-583 |
| Cow position: | chr21:2511085-2510854 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 356-583 |
| Cow position: | chr21:26650475-26650244 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-626 |
| Cow position: | chr21:1291757-1292030 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 47, 249 |
| Conread position: | 356-626 |
| Cow position: | chr21:46916022-46915738 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 162 |
| Conread position: | 356-660 |
| Cow position: | chr21:2788559-2788880 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 85 |
| Conread position: | 356-672 |
| Cow position: | chr21:2416652-2416334 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 92, 81 |
| Conread position: | 359-664 |
| Cow position: | chr21:30562233-30561915 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 277 |
| Conread position: | 359-664 |
| Cow position: | chr21:30599495-30599807 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 148 |
| Conread position: | 359-667 |
| Cow position: | chr21:35596797-35596472 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 106 |
| Conread position: | 360-583 |
| Cow position: | chr21:11453226-11453453 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 42, 158 |
| Conread position: | 366-582 |
| Cow position: | chr21:3797947-3798167 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 152 |
| Conread position: | 366-671 |
| Cow position: | chr21:4087226-4086908 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 31, 188 |
| Conread position: | 369-626 |
| Cow position: | chr21:37045331-37045063 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 152 |
| Conread position: | 369-672 |
| Cow position: | chr21:10762806-10762505 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 71 |
| Conread position: | 372-672 |
| Cow position: | chr21:36715046-36714731 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 30, 148 |
| Conread position: | 379-582 |
| Cow position: | chr21:18820019-18820224 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 54 |
| Conread position: | 379-664 |
| Cow position: | chr21:10850490-10850193 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 22, 262 |
| Conread position: | 386-672 |
| Cow position: | chr21:216693-216405 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 135 |
| Conread position: | 392-672 |
| Cow position: | chr21:992632-992921 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 245 |
| Conread position: | 411-672 |
| Cow position: | chr21:47948486-47948208 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 63 |
| Conread position: | 416-671 |
| Cow position: | chr21:37147877-37147616 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 417-553 |
| Cow position: | chr21:37292759-37292622 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 33, 89 |
Show alignments to all cow chromosomes.