Cow genome map
| Conread name: | Lym2-sn01_E07.f |
| Conread position: | 2-666 |
| Cow position: | chr22:297686-298400 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 2-670 |
| Cow position: | chr22:36580552-36581238 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 139-294 |
| Cow position: | chr22:870355-870508 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 25 |
| Conread position: | 139-639 |
| Cow position: | chr22:11782072-11782561 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 140-285 |
| Cow position: | chr22:724848-724706 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 147-273 |
| Cow position: | chr22:8875681-8875553 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 147-412 |
| Cow position: | chr22:36552656-36552924 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 215-582 |
| Cow position: | chr22:8135788-8136171 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 100, 23 |
| Conread position: | 234-620 |
| Cow position: | chr22:21364996-21365424 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 313 |
| Conread position: | 242-654 |
| Cow position: | chr22:41238558-41238126 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 155 |
| Conread position: | 264-582 |
| Cow position: | chr22:5308453-5308133 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 270-672 |
| Cow position: | chr22:34168677-34168258 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 70, 12 |
| Conread position: | 271-598 |
| Cow position: | chr22:525348-525686 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 271-609 |
| Cow position: | chr22:36184103-36183757 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-660 |
| Cow position: | chr22:18816039-18816443 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr22:17328393-17328799 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr22:31334691-31335093 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr22:36861187-36861590 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 271-672 |
| Cow position: | chr22:560358-560779 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-672 |
| Cow position: | chr22:19143345-19143773 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 34, 329 |
| Conread position: | 271-672 |
| Cow position: | chr22:39469176-39469593 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 274 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-672 |
| Cow position: | chr22:44934323-44933906 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 68 |
| Conread position: | 282-664 |
| Cow position: | chr22:31313675-31313281 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 282-672 |
| Cow position: | chr22:21589660-21589253 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 294-582 |
| Cow position: | chr22:5673057-5672768 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 108, 57 |
| Conread position: | 297-582 |
| Cow position: | chr22:117526-117811 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 105, 37 |
| Conread position: | 297-660 |
| Cow position: | chr22:36533424-36533801 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 95, 44 |
| Conread position: | 303-582 |
| Cow position: | chr22:44609911-44609627 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 306-671 |
| Cow position: | chr22:34607370-34606990 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 307-660 |
| Cow position: | chr22:42771761-42771413 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 307-672 |
| Cow position: | chr22:8875300-8874920 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 367 |
| Conread position: | 308-557 |
| Cow position: | chr22:38937777-38938027 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 33 |
| Conread position: | 309-672 |
| Cow position: | chr22:870566-870930 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 39 |
| Conread position: | 314-583 |
| Cow position: | chr22:44490189-44489917 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 88, 12 |
| Conread position: | 319-581 |
| Cow position: | chr22:41419393-41419663 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 49, 9 |
| Conread position: | 320-563 |
| Cow position: | chr22:6503376-6503627 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 320-582 |
| Cow position: | chr22:11031261-11030991 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 320-582 |
| Cow position: | chr22:13917803-13917534 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 320-661 |
| Cow position: | chr22:7277816-7277462 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 34, 107 |
| Conread position: | 321-560 |
| Cow position: | chr22:36592215-36592460 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 322-581 |
| Cow position: | chr22:310071-309810 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 328-672 |
| Cow position: | chr22:292876-293231 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 165 |
| Conread position: | 339-670 |
| Cow position: | chr22:39881899-39882248 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 339-672 |
| Cow position: | chr22:5932723-5933058 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 110, 18 |
| Conread position: | 352-579 |
| Cow position: | chr22:1879059-1878826 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-582 |
| Cow position: | chr22:18027545-18027311 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 180 |
| Conread position: | 352-583 |
| Cow position: | chr22:537367-537131 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr22:5233039-5233275 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr22:6020928-6020692 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr22:20240576-20240811 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 116 |
| Conread position: | 352-583 |
| Cow position: | chr22:27309507-27309743 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-672 |
| Cow position: | chr22:35672090-35672429 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 353-583 |
| Cow position: | chr22:10546909-10546675 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 165 |
| Conread position: | 353-670 |
| Cow position: | chr22:1319663-1319325 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 356-550 |
| Cow position: | chr22:44369365-44369561 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 110 |
| Conread position: | 356-559 |
| Cow position: | chr22:157645-157853 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 356-581 |
| Cow position: | chr22:46853603-46853375 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 46, 105 |
| Conread position: | 356-583 |
| Cow position: | chr22:16200735-16200503 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 359-583 |
| Cow position: | chr22:693881-693656 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 359-583 |
| Cow position: | chr22:3278098-3278324 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 359-583 |
| Cow position: | chr22:10909575-10909803 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 201 |
| Conread position: | 359-647 |
| Cow position: | chr22:35942953-35943250 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 359-671 |
| Cow position: | chr22:15313694-15314023 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 285 |
| Conread position: | 359-672 |
| Cow position: | chr22:42991430-42991098 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 234 |
| Conread position: | 359-672 |
| Cow position: | chr22:46547406-46547738 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 366-672 |
| Cow position: | chr22:36737010-36736689 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 370-582 |
| Cow position: | chr22:37131880-37131677 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 377-656 |
| Cow position: | chr22:8149319-8149606 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 20, 73 |
| Conread position: | 409-672 |
| Cow position: | chr22:32485146-32485426 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 411-664 |
| Cow position: | chr22:44396655-44396391 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 48, 105 |
| Conread position: | 445-672 |
| Cow position: | chr22:45976138-45975903 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 11, 56 |
| Conread position: | 447-626 |
| Cow position: | chr22:24949995-24949807 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 131, 16 |
Show alignments to all cow chromosomes.