Cow genome map
| Conread name: | Lym2-sn01_E07.f |
| Conread position: | 1-656 |
| Cow position: | chr28:29436574-29437287 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 219 |
| Conread position: | 83-631 |
| Cow position: | chr28:5801183-5800643 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 117 |
| Conread position: | 85-290 |
| Cow position: | chr28:14913703-14913501 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 84 |
| Conread position: | 139-582 |
| Cow position: | chr28:17312466-17312020 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 271-598 |
| Cow position: | chr28:1387013-1387341 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 271-598 |
| Cow position: | chr28:22260760-22261097 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-609 |
| Cow position: | chr28:14705280-14705629 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 80 |
| Conread position: | 271-664 |
| Cow position: | chr28:1167491-1167897 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 271-664 |
| Cow position: | chr28:7002381-7001973 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 271-664 |
| Cow position: | chr28:10581594-10582001 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 271-664 |
| Cow position: | chr28:12409837-12410237 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 271-664 |
| Cow position: | chr28:32791989-32792395 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-664 |
| Cow position: | chr28:33252703-33252298 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 80 |
| Conread position: | 271-664 |
| Cow position: | chr28:34594370-34593963 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-672 |
| Cow position: | chr28:782784-782366 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 57, 82 |
| Conread position: | 271-672 |
| Cow position: | chr28:2083985-2083573 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 272 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 271-672 |
| Cow position: | chr28:7740870-7740460 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 272-672 |
| Cow position: | chr28:9954521-9954107 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 71 |
| Conread position: | 273-664 |
| Cow position: | chr28:1814478-1814883 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 282-664 |
| Cow position: | chr28:1505221-1504836 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 297-672 |
| Cow position: | chr28:4380483-4380868 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 105, 44 |
| Conread position: | 305-670 |
| Cow position: | chr28:10618759-10619137 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 306-672 |
| Cow position: | chr28:13460321-13459940 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 35 |
| Conread position: | 318-582 |
| Cow position: | chr28:7789935-7790211 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 318-672 |
| Cow position: | chr28:21359350-21358979 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 13, 300 |
| Conread position: | 322-665 |
| Cow position: | chr28:18180813-18181155 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 102 |
| Conread position: | 330-671 |
| Cow position: | chr28:5813024-5812679 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 352-553 |
| Cow position: | chr28:22233089-22233293 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 126 |
| Conread position: | 352-576 |
| Cow position: | chr28:6780023-6780252 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 5, 117 |
| Conread position: | 352-577 |
| Cow position: | chr28:485252-485482 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-582 |
| Cow position: | chr28:1931676-1931909 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 352-582 |
| Cow position: | chr28:5797740-5797508 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 352-583 |
| Cow position: | chr28:14750857-14750622 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 154 |
| Conread position: | 352-583 |
| Cow position: | chr28:24587745-24587509 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 5, 162 |
| Conread position: | 352-626 |
| Cow position: | chr28:7822568-7822279 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 356-582 |
| Cow position: | chr28:9154980-9155204 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 356-583 |
| Cow position: | chr28:2592220-2591989 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 356-583 |
| Cow position: | chr28:2724587-2724816 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 34 |
| Conread position: | 356-583 |
| Cow position: | chr28:13440571-13440802 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-660 |
| Cow position: | chr28:9136746-9137068 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 46, 143 |
| Conread position: | 356-664 |
| Cow position: | chr28:5751400-5751722 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 46, 287 |
| Conread position: | 356-672 |
| Cow position: | chr28:24667884-24667551 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 359-579 |
| Cow position: | chr28:1953432-1953208 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 359-625 |
| Cow position: | chr28:29820036-29819756 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 359-664 |
| Cow position: | chr28:3192489-3192806 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 283 |
| Conread position: | 359-664 |
| Cow position: | chr28:15377690-15378007 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 359-672 |
| Cow position: | chr28:17388784-17388452 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 233 |
| Conread position: | 359-672 |
| Cow position: | chr28:18520157-18520490 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 48, 128 |
| Conread position: | 361-664 |
| Cow position: | chr28:5114511-5114815 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 41, 227 |
| Conread position: | 369-598 |
| Cow position: | chr28:8721157-8721394 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 86, 202 |
| Conread position: | 369-670 |
| Cow position: | chr28:34649236-34648916 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 32, 149 |
| Conread position: | 377-672 |
| Cow position: | chr28:17667229-17667543 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 392-672 |
| Cow position: | chr28:18101677-18101963 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 416-598 |
| Cow position: | chr28:2989472-2989663 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
Show alignments to all cow chromosomes.